| mature miRNA: TTTGGATTGAAGGGAGCTC species: Populus deltoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|56821759|gb|CX174335.1|CX174335 C06_69-88_06.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGTGAAGCCATTTAAATCCCTCAAAACATTATCTTTTAGAAGGATGCCAGAGTGGCGCGAGTGGATTTCAGACGAAAGCAGCCGGGAAGCGTTCCCTCTTCTTGAGTTTCTTTCAATCAAAGAATGCCCCAACCTTACAAAGGTCCTACCTGGTCACAACCTTCCACGTGTAACAGAACTTAGAATTGAAGGATGTAGGCAGCTCGCGACTCCACTTCCTAGGTTTCATGGGTTGCTCTCTCTTTTTGTTTGTGATTTGCACTCCCTAGAGTCCCTACCCGAGGAAATTGATCAAATGGGTTGTTCACCCTCTGATTTAGGGAAAATTATAATCCAACGCTGCGCTTCTCTCAAAGGCGTCGCACTGGACTTGCTCCCCAAGTTAAATTTTCTTTCTATCCATGACTGTCCAGATCTGGAATCACTATGTGCACATGAAAAACCTCTCAATGATCTCACCTCTCTCCGTTCTTTGGAAATCGAGCGGTGCCCTAAATTAGTTTCATTTCCCAAAGGAGGGTTACCTGCTCCAGTCTTGACACGACTTGAGTTAAAAGAATGCAGGACATTGAAGCTGTTGCCTGAGAGAATGCATTCCCTCCTCCATCCCTTATCATTTG | |||||||||
gi|56818746|gb|CX171322.1|CX171322 D10_69-71_08.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGCCTCGTGCCGAATTCGGCACGAGGTGCCAGAGTATGAGCATATATTTACGGATTTCCTTCTGAGCCTTGTACAGAATCAATACAAGAAAAAATCCACCTAGAAACTGTTGGAGGCATGACGGACATAAAAGAAGTTGTGTATTGAAAGTATCATGTTGTCCGAGAAAGTATGTGCAGGGGGGGGGTTGCTAGGTGCCGTGTATAGCATAATTAATGCCTGCTAGCAGCTGGAGGAGGATATGCGCAAATCCCAACCTTCAACGTCTGTAATTACTGGCTGGCTGGCTGGCAGGAGCTCCCTTCAATTCAGCTGGCTTTGCTCAATTCCTTATGTTATCTCGCCATTATTCTGTGCTGTTCAAAGGGTGTCATGAGCAGCTGGTGAATAGCAACCCCATAATCTGTATAGTCATTTCCCTTGGGATAGTAACTATCCCTCTGACTTGTCGAGAAGTTAATAGAATAACTCGAAACTTTAAACAATGGCGCTGTAAAACTCTCTGCCGTGTAGAATGAGAGTTGCCATCGTTTTGACAAATGAATTTCCGTTGCGTACACAAAGTAACCAGATTTGTAAGCTGAAGTATCTCAGTAAAAGAAAATAGCAGTGTCAAAGCTGAAGATTTGGTAT | |||||||||
gi|56815063|gb|CX167639.1|CX167639 F08_69-6_12.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoide TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGGCCTGATGGAGTGATCAATGTAATAACGGGATATGGACCTACGGCTGGTGCTGCCATTGCATCTCATATGGACGTCGACAAGGTATGTTTTACAGGGTCTACCGAGGTTGGACGGAAAATAATGCAGGCTGCAGCAACAAGCAACTTGAAACAAGTTTCACTTGAATTAGGAGGCAAATCACCTCTCCTAATTTTTGACGATGCTGATGTAGATAAAGCTGCAGATCTTGCTCTCCTTGGCATCCTGTATAACAAGGGAGAAATTTGCGTCGCGAGTTCCCGTGTTTTTGTTCAGGAAGGGATTTATGATGAATTTGTAAAGAAGTTGAAGGAGAAGGCAAGAGATTGGGTAGTTGGGGATCCTTTTGATCCAAGGTCTCGCCTAGGTCCACAGGTTGATAAGCAGCAGTTTGATAAAATTCTTTCGTACATCGAGCATGGAAAACGAGAAGGGGCCTCTTTGTTAACAGGTGGTAAACCTGTAGGCAAGAAGGGATATTTCATTGAGCCTACAGTTTTCACAGATGTTAAGGAGGACATGATGATAGCAACAGATGAGATTTTTGGACCGGTAATGTCACTCATGAAGTTCAAGACAATTGACGAGGCAATTAAG | |||||||||
gi|56821324|gb|CX173900.1|CX173900 C07_69-20_05.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): AAGAATTCGGCACGAGGTTTTTTTTTTTTTTTTTTCCAGTCCTCAAGTTATCAACGACTTATGAGTAGATAAATTGTAGCAAGTCCAAAGCAAACAAAGTTCCTTTAAGTATCTACAGGAGTATGGTGGCAAATTCCTTTGGGTGGGAGATATGAACATGGATACATCAAAAGAAAACAGTATTTGGCCTTCCTTCAGTTCAAGAACACCGCTGTACATGACTGTGCAAGCTGACCATACATACCATGCTGCGCCTGAGACTGCTTCCGGCAGATAATTGGTAGCCTTAACCCAAATTTACAACTATGAGAAAGAGACATGGATCCTGTAGCAAGCCATGAGCTCTCCACTGGAAAATCAGCATCTCTCAACAGCATCCTACCTTTTCTAAGAGGCGCAGGAGACCCTTTCATGTCACTTGTAACTGTACTTGGTATCTGCAAGATATTGGAATACAGGACACCTTCTGTTTGCTTCTGATACAGCTTCTCTAGGTTTCCAACAGGTATTTCTTTTTCCAACGCCTCTTTTCGACTGGTCATTTCCTTTCTGTTCATCGTGCCAAGAAGTCTATTTGCCTCTTTTGTCATTCCAGTAGCACGCCATGCTTCAGCAACAAGCAACATGGTTGATTTCTCAGGCTGAAACTCAAATTCTGTCATAATCTGGAGAATTTCTTCTGCCTTCCA | |||||||||
gi|56824444|gb|CX177020.1|CX177020 G11_69-53_13.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGTCTTCAAGTCCCCACATTTCTATATGGAGCTGCCAATGTTGAAGGGAGAACACTCGATTCAATCAGAAGAGAGCTGGGTTATTTCAAGCCAAATTCTGGAAACCAATGGGCAGGTGGGCCAAAATCAGAGTCCTTGCCACTGAAGCCAGATGAAGGTCCAGCTCAAGTGAATCAAGCAAAAGGTGTTCTTGTAATTGGAGCAACCAGGTGGGTTGATAACTTCAATGTCCCTGTCTTCTCCACTGATATTGCTGCTGTTCGTAGAATTGCAAAACGTGTTAGTGGGAGAGGAGGCGGGCTTCCTTCAGTTCAAGCAATGGCACTTGCACATGGTGATGATGTCATTGAGGTTGCTTGTAACTTGTTGAAACCAAGTAATGTGGGAGGAGAGATGGTTCAGCAAGAAGTTGAGAGACTCGCAAAGGAGGAGGGTATTGCTGTGGGGAAGGGATATTTTACAGATTTCTCACAGGATAAAATAATTGAAAATTACTTGAAGTTTTGTCCCCTAATTTAACCACAAGATGCAATTTTGTAACAGAGAAGGTATTGTCCCTTCTGTGAAAATTACTTTAAAAAAAAATGCTACGCTGAAGGTGTCTTTCTAAGGGATTTTTGTTCCGATGCATGTGATGTGAATGGTTGTGCACACATGAAATGTGTACGTCTTTACCAGCATATTCACATCTT | |||||||||
gi|56822802|gb|CX175378.1|CX175378 B12_69-67_04.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): AGTGGATCCAAAGAATTCGGCACGAGGGTAATCTTCACGTTCTACACTATTAATATTAGCAGAAGCTTAGCTTTTCCCTTCTTCATAGCATTTTTTAAGTCTTCATCAAGACCCGCTTCTCAGATCCAAAACAAAAACTAAAAGATGAGTCTCTGTTTCGTTGACGAACTCAAGTCTCAGCCTTCATGGCTTCTTGTGCTCTTCACTCTGGGTTCTCTTTCATTTCTGAAGTTCCTTTTCGCTTCTCTCAAATGGGTCTACGTTAGTTTCCTCAGACCTGCCAAGAATCTCAAGAAATACGGATCATGGGCTCTCGTTACTGGACCCACTGACGGTATTGGCAAAGGATTCGCTTTCCAATTGGCTCGAAAGGGTCTCAATTTAATCTTGGTGGGCAGAAATCCCGATAAACTCAAAGATGTGTCGACTTCAATTCAATCCAAATACAGTAATGTCCAAATCAAGAACGTTGTTGTTGATTTCAGTGGCGATATTGACGAGGGTGTTCAAAAGATTAAGGAGACTGTTGAAGGTCTGGATGTTGGTATCTTGATTAATAATGTCGGGGTTTCTTATCCTTATGCCAGGTTCTTTCATGAGGTTGACGAGGAGCTGTTGAAGCATTTGATTAGAGTGTATGTTGAAGGTACTACTAAAGTTACACAAGCTGTTCTGCCTGGGATGTT | |||||||||
gi|56822928|gb|CX175504.1|CX175504 D09_69-76_07.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCACGAGGCAACCACACAGAAATGCCACAGGCAACGTAAACAAGGAAACCCCCAAAACCAAAAAGATTGCAGATTTCCTTTCAATCAAAACGAAAATGCCTCTTCTTCTCTCCAATCCTCTCACCTCGCTCTCTTCACTTCCCCCCTTTTCATCTCCAACTTTGGCCTTCATTGCAACACCATGTACCCACTTCTTTAGATTTGTCTTATGTTTGCAGTTTTTGCTAATATCGGCTGTATCGACGGTGAATTTTATTATTTCTGCTTTTCAGCACTTGTTAGTAGAAGCTTAGTTGGATTCACTTCATCCTCGCTTGGCCGTTTCATCAAACACTTATCACTTGCTTCCTAAGTTCAACCAGTTCTTGGATGCTCGTGCTTTCTATGTTATTTCTAGGAAGACTGGTCTTTTCTCTGTTATAACCACCGATTCAATGTGGGTTTTGCTGAGAATTCCTAAATATGTGATCTTCTCTTGGATTTAGTATTAAAGGCTCATATCTGAATTTTGTGCTCGTGCTTTCTATAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|56816758|gb|CX169334.1|CX169334 E06_69-81_10.ab1 leaf inoculated with Marssonia pathogen of Populus deltoides Populus deltoid TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): TAGTGGATCCAAAGAATTCGGCACGAGGCCTCTCTGTCCTTCTCTATCTCTCCATCAAATTTCATTAAATAGTCCACTGTCCTTCTAACTGCTTTCTCCTAACCCTATATCTCCCATTTGATTTTCCTCACTCTCCCTGTCCTGTGCTTTCCTTGTAATCTTCACGTTCTACACTATTAATATTAGCAGAAGCTTAGCTTTTCCCTTCTTCATAGCATTTTTTAAGTCTTCATCAAGACCCGCTTCTCAGATCCAAAACAAAAACTAAAAGATGAGTCTCTGTTTCGTTGACGAACTCAAGTCTCAGCCTTCATGGCTTCTTGTGCTCTTCACTCTGGGTTCTCTTTCATTTCTGAAGTTCCTTTTCGCTTCTCTCAAATGGGTCTACGTTAGTTTCCTCAGACCTGCCAAGAATCTCAAGAAATACGGATCATGGGCTCTCGTTACTGGACCCACTGACGGTATTGGCAAAGGATTCGCTTTCCAATTGGCTCGAAAGGGTCTCAATTTAATCTTGGTGGGCAGAAATCCCGATAAACTCAGAGATGTGTCGACTTCGATTCAATCCAAATACAGTAATGTCCAAATCAAGAACGTTGTTGTTGATTTCAGTGGCGATATTGACGAGGGTG | |||||||||