| mature miRNA: TTTGGATTGAAGGGAGCTC species: Populus tremula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|38599803|gb|CK115478.1|CK115478 Y010E06 Populus infected leaf substracted cDNA library Populus tremula cDNA clone Y010E06 5', TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGCCCAAAACCAAAAAGATTGCAGATTTCCTTTCAATCAAAACGAAAATGCCTCTTCTTCTCTCCAATCCTCTCACCTTGCTCTCTTCACTCCCCCCCTTTTCATCTCCAACTTTGGCCTTCACTGCAACCCCAGTTTCCAGGCTGGACGTGAAAGCCTTTGAATTAAAGTTTAAGACTTGGAATGGAATCCGGTTTCAAAACCCAATTCGTGGAAACAGAATTGGTGCAGTTATTGTGAGAGCTTCTTCGGATATGGATGGAACAGCTCCTGCAGAGACAAGTGAGCCTCCTGTAGAAAGCAAAGAGGAGGTTGTGGCAGTTGATAAGTTGCCATTGGAGTCAAAGTTACAGGAGAGAGAAGAACAGAAGATGAAGATGAAATTGGCGAGAAAGATCAGGCTTCGAAGGAATAGGCTTGTTAGGAAGAGGAGGATGAGAAAGAAAGGGTCGTTGGCCGCCTTCTAAGATGAAGAAGTTGAAAGAA | |||||||||
gi|24102968|gb|BU891903.1|BU891903 P056H04 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): AAAAAAGAAAATTCCTTCTCTTTAGATCCTTTAAAATCGTAGTTAATCAGCTGGTTTTTTAAGGCAATCCCTTCACCTTGATCTGCTCTCTCTCTTTTGCAGCTAATACTTCTTTAGTCTTCTCCGCCATTTTTCGGCCACACATTCTCTTTATCTTTTCCCGTCTTCTCTGTCTTTGCTCCTTTCAGTCTAAAAAACCGAGTCCTTGTTCTTTGTTTTAACTCAAATCCGGCTGCTTTAATTTCAAGACTTGGAAAGTTCGTTTCTCTACTAATCCCTTTTTGTTATTTGCTGATCTTGCCATAATAGTGCATGCTTTATGTTCTTTAGGCTGTTCGATCTTCTGGAACTCCTTAGCTCTACTGTTATTTTTGCGATCCCAAGTCTTAGGTCTGGTTTAA | |||||||||
gi|60697344|gb|DN487644.1|DN487644 Q056H09.3pR Populus dormant bud cDNA library Populus tremula cDNA clone Q056H09 3', mRNA sequ TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): TTTTTTTAAAAAAAAAGGAAAATCTCAAAGCAAAACTGGAGAAGGAAAAGGGGAAAAAAGTTCCCTTTAATTCAAACCGGAGCCCCCCACAGGAGTTTTTTTTGCCGGTTCCTTTTGGGAAACAAATTTAAACAATTTTTCCCTCCCTTTTTTTTTTTTTTTTAATCTTTTTTAAATTTATCAGCTCGGAAAGTGCCTGGAGACTTAATTGTACTGCGACACACGTTGGGATTTTTACTTGCTTCCTCATCTTCTGTGTAACAGTGAGTTAAATTGTTTTCCGTCTTAGCTAATATGTTGTTTTCTTTACTTTCTTTCTTTAATTGTACATAGTGTAATATTG | |||||||||
gi|24048173|gb|BU862113.1|BU862113 S011F05 Populus imbibed seed cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): CACAGATATGCCATAGGCAACGTAAACTGGGAAACCCCCAAAACCAAAAAGATTGCAGATTTCCTTTCAATCAAAACGAAAATGCCCCTCCTTCTCTCCAATCCTCTCACCTCGCTCTCTTCACTTTCCCCCTTTTCATCTCCAACTTTGGCCTTCACTGCAACCCCAGTTTCCAGGCTGGACGTGAAAGCCTTTGAATTAAAGTGTAAGACTTGGAATGGAGTCCGGTTTCAAAACCCAATTCGTGGAAACAGAATTGGTGCAGTTATTGTGAGAGCTTCTTCGGATATTGATGGAACAGCTCCTACAGAGACAAGTGAGCCTCCTGTAGAAAGTAAAGAGGAGGTTGTGGCAGTTGATAACTTGCCATTGGAGTCAAAGTTACAGGAGAGAGAAGAACAGAAGATGAAGATGAAATTGGCGAGAAAGATCAGGCTTCCAAGGAATACGCTTGTTACGAAGAGGAGGATGAGAAAGAAGGGTCGTTGGCCGCCTTCTAAGATGAAGAAGTTGAAGAATGTCTGAGCGTTACCTCAA | |||||||||
gi|24099125|gb|BU888060.1|BU888060 P003B08 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGGGACCCTTCGATCCAAAGAGGTCCTCCCTCTTGATCTTCTGTCTTCTCTTCTATCCTTCTCTGTGGGAATCTGGACAGTCATTCTTTAGACCTCTCCTTTCTTTTTTTATCTCTCCTCCTCTATGAATCCTTCTTTGTATAAATTCTTTAGATTATATTTTTAATTTAGAAATCTAGATTAGTACAGCACAAAAAAAAACTGAAATTAGCTCTTATTTTTTTGTTGTAAGCTTAATTAAATTAAATTTATCAAAAACCATGACATCAGTCATCAACATCGACGGTCACCAATCACTTCACTCCCTTCAAGATGAGGGTGAAATGGAGAGTAAAGTGGAGATTAGCGAAAGGGCATGTGGTAATCATGGTGGGATTTGTGCTATATGCTTGGATAAGATTGTGCTTCAGGAAACTGCTCTTATTAAAGGTTGCGAGCATGCGTACTGTGTGACGTGCATCCTTAGATGGTCCACGTACACTAAGAATCCAACTTGTCCTCAGTGCAAACATCCATTTGAGGTTCTCAATATTCACCGTTCTCTTGATGGCAGCATCCAGGATTACATGTTTGAGGAAAGTGTTTGCCTCCTCCTTCGAGCCTCATGGTTCAAGACTTTGACTGTGGAGGATCATGAAGATGTTTATGAAGATCCAGAGGATTATTATCCATATGAGTTTGAGGATGAGGATGATGATCTAGATGAAGTGCACTTTAGCAGTTCATCCAATCTTCGCA | |||||||||
gi|60706696|gb|DN496506.1|DN496506 P073C03.5pR Populus petioles cDNA library Populus tremula cDNA clone P073C03 5', mRNA sequenc TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): TACCATGTTGTCCGAGAAATAGCATATTTAATGCCTGCTAGCAGCTGGAGGAGGATATGCGCAGATCCCAACCTTCAAACGTCTGTAATTACTTACTGGCTGGCTGGCTGGCAGGAGCTCCCTTCAATTCAGCTGGCTTTGCTCAATTCCTTATGTTATCTCGCCATTATTCTGTGCTGTTTGAAGGTGTCATGAGCAGCTGGTGAACAGCAACCCCATGATCTGTATAGTCATTTCTCTTGGGGTAGTAAGTATCCCCCTGACTTGTCGAGAAGTTAATAGAATAACTCGAAACCTTGAACAAAGGCTCTGTAAACTCTGCCGTTGTAGAATGAGAGT | |||||||||
gi|24099147|gb|BU888082.1|BU888082 P003E02 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGGAGATAGTGCCTTGTGTGTGGTGAGTTGAGCCTGGGGGCCTAGAGTTACAAACAGAAAGTTGGATACTATCTCTTAGGTTGTCTCTAGTTAACTCCTCTTCTTCTTTGAGAAAGACAAGGATGAGTTATTTAGGTGTTGGTGTTAGTCCTGGGAATGTACCGGTGTATCATGGCGGCACTAACTTGAAGGTTATTGATAGGAGAGTGAGGCTAGCAGAGTTGGTTTTGAGGTGTGTGATCTGTTGTTTAGGAGTTCTTGCTGCTGTTCTTGTTGGTACAGATACTCAAGTTAAAGAAATCTTTTCAATTCAAAAGAAAGCAAGATTCACTGACATGAAAGCTCTTGTCTTTTTGGTGGCAGCTAATGGGATAGCAGCAGCCTACTCATTGGTTCAAGGGGTGCGCTGTGTTGTGGGCATGGTTAAAGGAAGTGTTCTGTTTAGCAAACCCTTAGCTTGGGCTATTTTCTCTGGTGATCAGATGATGGCATACCTGACCATGTCTGCAGTGGCAGCTGCTGCACAATCGTCAGTGTTTGCAAAGTTGGGACAGCCTGATCTCCAATGGATGAAGGTATGTACCATGTACGGAAAATTCTGTAACCAGGTTGGTGAAGGAATAGCAAGCGCGCTGTTGGTCAGTGTTA | |||||||||
gi|38581174|gb|CK096849.1|CK096849 UB30CPA02.3pR Populus active cambium cDNA library Populus tremula cDNA clone UB30CPA02 3', mR TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GCAACTCTTTCTTTTATCAGAGACAAAAATCCTCCCCTCAGTAGGATAACGAAATCAGAACGGCGATGGAAGGAGGAGGGACACTATCGGAAATATACCAGAGTGCGAAGAAGTTGCTAATGAGAGCACAGGATGGGATCGAGAGACTGGAGCGACTGGAGAACTCGACTTCTAGTGGAGGATTAGATTCACCTGAGCTATCTTTCGTTGTCAAGAAGGATATCTCTCAGGTTCTTTCTCTTTGCGCCGATATGGATCGTCTCTGGCGCTCTGTTCAAGCCAAACCTCAACGCGATCTCTGGAGAAGAAAGGTGGAGCTAGTAGCTGAAGAGGCTGGTTCATTGAAAGAGAGTTTGGATAGGTATTTTGCAAGGAATCAAAGACGGATGAAGGAAGCTCAGGAGAGAGCAGAGTTGCTTGGAAGAGCTAATGGTGATTCAGCTCATGTTTTGAGAATATTCGATGAAGAAGCACAAGCAATGCAGTCAGTTCATAATTCAAAAAGAATGCTGGCAGATTCAATATCAACTGGAGCAGCCATTCTTTCCAAATATTCAGAACAAAGGGAACGCTTAAAGAGGGCACAACGCAAGGCTTTGGATGTGCTTAACACAGTGGGGCTCTCCAATGCTGTACTGAGGCTGATCGAGAGGCGTAACCGTTTCGATAGATGGATCAAATATTTTGGAATGCTTATCACGCTTGTCATCTTGTATTTTCTCGTTAGGTCAAGTGGTTGAAGAGCGCTTGTTTTTTCTTCTTCATAGATGGCTGTTCGGTTCGAAGCTAAGGAATTTGTACTTAAAAATACAAATCTTATAGGATGCACTGGAAGAAAG | |||||||||
gi|60707530|gb|DN497340.1|DN497340 Q056H09.5pR Populus dormant bud cDNA library Populus tremula cDNA clone Q056H09 5', mRNA sequ TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGACAACAATAGGGTAAACCTTAGGGCCTAAACTGAGGTTTCTCAGAGGAAAAACTCGTGAAGATACGATAGCCTTCGGCTACGTGAATTCATTATTCAAGTGAGAAGCATTACATTACAGGCTGGTCTAAGCCGGGTCTGGCCTGATAAATCAAGTGTTTTGAGCTCCAGCTTTGGTCATTGGAGCCCACCTCCAGCCCACATTATGTTCTTAGTTACTTAAGGCGTGCTCAACAGTTATCTGTGAATTTACTTATTTGTTTTTTTCTAAGAAAAAAGGAAAATCTCAAAGCATAACTGGAGAAGGAAAAGGGGAAAATAGTTCACTTTAATTCAAACCGTAGCCCACAACAGGAGTTTTCTCTGCCGGTTCCTTCTGGTAATCAATTCTAAACAATTTCTCCTTCACTTTTTTTTTTTTTTTTAATCTTTTTAAAAT | |||||||||
gi|24056980|gb|BU866326.1|BU866326 S065D10 Populus imbibed seed cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGAGAGCTCACTTTCCTTATCCAAAAACACCACACAGAAATGCCATAGGCAACGTAAACTTGGAAACCCCCAAAACCAAAAAGATTGCAGATTTCCTTTCAATCAAAACGAAAATGCCCCTTCTTCTCTCCAATCCTCTCACCTCGCTCTCTTCACTTCCCCCCTTTTCATCTCCAACTTTGGCCTTCACTGCAACCCCAGTTTCCAGGCTGGACGTGAAAGCCTTTGAATTAAAGTTTAAGACTTGGAATGGAGTCCGGTTTCAAAACCCAATTCGTGGAAACAGAATTGGTGCAGTTATTGTGAGAGCTTCTTCGGATATTGATGGAACAGCTCCTACAGAGACAAGTGAGCCTCCTGTAGAAAGTAAAGAGGAGGTTGTGGCAGTTGATAAGTTGCCATTGGAGTCAAAGTTACAGGAGAGAGAAGAACAGAAGATGAAGATGAAATTGGCGAGAAAGATCAGGCTTCGAAGGAATAGGCTTGTTAGGAAGAGGAGGATGAGAAAGAAGGGGTCGTTGGCCGCCTTCTAAATGAAAGAAGTTGAAGAATGTCNTGAGGGTTACCTCAAGGTTCTGCTTGCAGGTTTAGTGCTGATCCTTTTGATTCTCATGTAA | |||||||||
gi|24101309|gb|BU890244.1|BU890244 P033H03 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGTGGTATCAACGCAGGGCCCATTACGGCCGGGGGATAACAATCCTAGGAGATCTTGTTCTAAAAGACAAAATCTTTGTTTATGATATTGCTAATCAACGGATTGGATGGGCTAATTATGACTGCTCAATGTCAGTAAATGTGTCTACTGCCATAGATACTGGCAAAAGCGAATTTGTCAATGCTGGGACACTGAGCAATAACGGTTCACCAAAAAGCATGCCCCACAAACTGACACCGGTGACTATGATGTCACTCCTTCTACATATGCTATTGCTCAGCTGTTACATGTTTTTGTAGCATACCGTTCTTTCCTTCACTGTAACGTGCTCTTTCCGGTTGATATTTACAGCAACCGGCAGGGCCATGTAGTATTTCTATTTTGGTTGCCGCCAGTTGTTGCCTGGTGTGCAATTGGTTTGTGAGTGCCTTTTAATCCAATCATACTTCGTCGGCCGTCGGCCATGTACACTGATACTTTCATGATTCATCCAGTAGCAGTCTCGCTCTATTGGGAGCGCTGTAAATTTACCTCATATATAGGATTGTTGATCTAACAGCAGAATTAATTTAA | |||||||||
gi|23986720|gb|BU820932.1|BU820932 UB16CPG02 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): TGAAGGGTGTTAGGCACCTACTTGTTCAGAAATCAATCCCCAATGGATTGGTTTTTGTCGGGGAATTGCCTTATGGACCTAAAGGTTCCTTTAGTCCAAAGATGGATCACCTGGTCTGTTTCTTGCCAGGAACACTTGCTCTTGGTGCCACCAAGGGTCTCACAAAGGAGAAGGCAATGAAAGAAAACTTGCTCAAATTTGAGGACCTTGAAAATTTGAAGCTTGCAGAAGATTTAGCCAAAACATGCTTTGAGATGTATTCAGCAACTTCCACTGGGCTTGCCCCAGAAATCGCTTACTTCCATACTGAGGTTGGTTGAATTTGGATGATATGTTCCCTGAACGCAGTTTTCTAAACCATCAATGCACCATAGAGGATCATTTTCCTCCCCACTTACTGCAAGCTGTTGACTCTTTG | |||||||||
gi|38592055|gb|CK107730.1|CK107730 UB68DPH01.5pR Populus active cambium cDNA library Populus tremula cDNA clone UB68DPH01 5', mR TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): AGATAATCCTAAGTCGTTAAGGGTCTGCTAGAGCAATATGTGGGCTAAGGTTGACCATGCTTAGTTCAGCGAAACTTATCATCTAGTTTTTCATTATTTGTAAATTCCTTGAATTGTCTACTGAGGCAGATGCTATAAACTTACGATTGGATCTCCTCCATTTGTAAATAACCATCTGATTCCCTTCAATTCAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|60707501|gb|DN497311.1|DN497311 Q053G11.5pR Populus dormant bud cDNA library Populus tremula cDNA clone Q053G11 5', mRNA sequ TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): TACGCAGTCGAACTCTTGCAATTTCCAAAACCCTACTCATAAGTACAAAATGGAAAACGACGCTGGTGTTGTTGTCGACCTCTACGTGCCACGAAAGTGCGCCGCTACCAACCGTCTCATCACGGCAAGAGGACCACTCTTCAGTCCAAATCAACATTGCTGAAGTCGACGACAATGGAAAGATGATCACCGGAAAGAACATCAGCTATGCTTTCTCCGGATACGTTAGATCGCTCGGATGAGGCAGATGATTCTTTGAACATGCTCGCTACTCAGGACGGTCTCCTTAAGAACGTCTGGTCATACCAGAAGTAAAAACGCTCGCATACTACGAATCAAGGTCGAAGACGGAGAAGCTGCTTCTAGAAACAATCGTTTTTCTTTCGCAAACCTATTCATGAAATGCTTGTTAAGAGGGAGTCTGTAGTGTTGGCAGAGTGCAATCTAACATTATAAACCTTTTCCCC | |||||||||
gi|24100420|gb|BU889355.1|BU889355 P019G08 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGGTTGTGGTTCCAAATTTTCTTCTCGCAGAACAGTTTTTGACGGACCATCTAATACAGAAACTAATACAGGTGGGTAACCAACCTTATGAGGTGCTAAACATCATACAGATTCTGCCTGGTTCTAGAAGAAACATGGAAAATGCTCTGCCAAGTGTGCATGTCATGTACAAGAAACCTAGAAAATACCCCTACTCTTCAGTTCAATTTCTGGAAAAATAAATGCCAGATAACCGTATTTATATGGCAGCTAACTATAGGGATTCCTTCAATCCTAATCATCAACTTCCA | |||||||||
gi|23985177|gb|BU820371.1|BU820371 UA54DPD11 Populus tremula cambium cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): AAACCGCTCCTCCTAAGCCATGGTGGTGCTTCCTTATACTGTTGCTTTCCTACTCCTTTCCTTCTTACAGACTGTAAAAATCGCAAACTCGCAATCATTCATCGGTATAAACTACGGCCAAGTTGGGGACAACCTTCCACCACCATCATCCACCGCAAAGCTTCTTCAATCCAAAAGGTCCGATTATATGGATCGGACCCCGCCATAATCAAAGCCTTAGCCAACACCGGAATTGGAATTGTTATCGGCACTGCAAATGGTGACATTCCAGGACTAGCCTCTGATCCCAATTTTGCCAAGAGCTGGATCAACACAAACGTGCTTCCCTTCTATCCAGCTAGCAATATCATCCTCATCACTGTTGGCAACGAGGTCATGACTTCCAATGACCAGAATCTCATTAACAAGCTCTTACCAGCAATGCAAAATGTACAGAATGCTCTAAATGATGCATCGCTCGGGGGTACAATNAAGGTCTCCACAGTTCATGCGATGGGAGTGCTTAAGCGGTCTGAGCCACCTTCTTCTGGA | |||||||||
gi|24101912|gb|BU890847.1|BU890847 P042E06 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence TTTGGATTGAAGGGAGCTC EST sequence (targeted fragment marked with yellow): GGATTGGATTGGAGGGATTTTATGGACCATCGGCTCCTGATAGGGCTCAGTTCAATCCAAACTCATATGCTACGCAAGTTGGAACCGACTTTATCAGGAACCATCAGGTTCTTGGTGTTGATTTTGCTTCTGTTCACATATATGCAGACTCCTGGATTTCGCAAACAATTACGGATTCTCATATCCAATTCACCAAGTCATGGATGGAAGCTCACATAGAGGATGCTGAGAAATATCTGGGAATGCCGGTTGTGTTCGCTGAGTTTGGTGTATCTTCAAAAGATCCTGGATACAACTCATCATTCCGCGACACACTAATTAACACAGTGTACAAGACCCTCTTGAACTCAACCAAGAGAGGTGGGAGTGGAGCTGGGAGCCTTCTGTGGCAGCTTTTCCCTGACGGGACAGACTACATGGATGATGGATATGCAATTGTTCTATCAAAATCTCCTTCCACATCAAACATCATTTCCCTCCATTCAACACGAGTCGCAATCGTCAATTCCATGTGTTCGTGGAAATGCAAATGGGGCTGCAAGAAGAGGAA | |||||||||