| mature miRNA: TTTGGATTGAAGGGAGCTCT species: Centaurea solstitialis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|124684067|gb|EH778807.1|EH778807 CNSS17636.b1_H18.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS17636 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGGGGATCCACAGATATATATAGACACGTAAGTACATAGATACAGACATACACAAACGTGTAAGCTCAACCACTCCTTACAGCTGAATCCATGGAGAGACACACATAAATAGAGGCACGAGAGAATTCAAGTTCAAACACATTCTCCATATTTGTCTCTATATACATACACGTATATGTAAATACAGGCACACAAGAGCTTAATTCAATCCATATCCTCCAGTGAATTGAAGAAGAAAAAGACGGGATAGAGGGGGTACTATAAAGGATGGTTCTTAGGAGTTTGAAATTTCTTCTTATTGTTATGATGGTGATTATATTGCTATTGGTTTCACCGCTAACGACGGGTGCAATTAGGGTGCTCAAGGAAGATGATGATTGGTTTAAGAGGTACGAGGGTTTAATACACAGTAAACTTCCACGAGGGCCGGTGCCCCCTTCTGGTCCTTCTTTATGCCATAACGCTCTTAATCTTGATAGCCAAACCGAGCTTCTATCTACTCAAGATCAAAGCTTTTGTCCATAACTATAATTATATAATTGCTTCTGGAGTTTGTTCTTAATTTTATGTAGATTTTTTGTACCTTTCAATTCAAGAAGTAAGAATCGGAGTCAATTTTCTTCCTTTCTTCGGCTACAAGTTGCATAGATTGAGCACAAGTCATTGTAGATTGGATTCATATATAATTAAATGAAGTTGTATTGTATAGATGATTGTTATACTCTTTTATGTAAATATTTTGATCATTTTGAGCAAAAAAAA | |||||||||
gi|124679640|gb|EH774380.1|EH774380 CNSM6736.b1_O04.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM6736, TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GCGGGGTTCATGGTTATAATATTCTTCAACAGATTGTGAATATTGAGAACTCCTTTCAATTCAATTATAGCAAATATATAATATAATATCTGTATGCAATCTCAGTTTTTCTTCCCCTTTTTTAAACTTATCGAAAGAAGATAAACGTGCAAAACTTTGATTACCATTTTTGTCATATAGTTAAGAGGGTTTTCAAATCATAACTTTTGGGAAGAAAATGGAGAAGGGTTCGATCAGCAAGTTCAAGAAGGTGTGTGTTTTCTGTGGAAGTCATCCTGGTCGCAGAGAAGTCTTTAGTGTTGCTGCTACTGAACTGGGAGATGAAATGGTGAATAGGAAGATAGACTTGGTTTATGGTGGTGGAAGTGTTGGTTTAATGGGTACGATATCCCAGAGAGTTTTAGATGGAGGCTGCCATGTTCTTGGGGTCATTCCTAAAGCCCTTGTACCTCTTGAGATCTCTGGTGAAAGTGTTGGAGAGGTGCGGATCGTTTCCGATGTGCATGAAAGAAAAGCCGAAATGGCTCGAGAATCTGATGCTTTTATCGCGCTTCCAGGAGGTTATGGAACTATGGAGGAAGTATTAGAGATGATCACATGGTCGCAGCTTGGAATTCATAAAAAACCCGTTGGTCTCCTAAATGTTGATGGTTATTACAACAATTTGCTGGCACTATTCGATAACGGAGTTGAGGAAGGTTTCATCAACCCAGGTGCTAGACACATTGTTTTATCGGCTTCAAATGCAGCTGATTTGTTGACAAAGATGGAGCAATTCACGCCTGCACATGATAATGTTGCGCCACACGAGAGTTGG | |||||||||
gi|124675790|gb|EH770530.1|EH770530 CNSM3151.b1_M19.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM3151, TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGACCTTTCTTGAATCCAAAGGTAACTCTCCCTCTCTATATCTCTCACTTGACTCCAAATCCCCCCATCTTCCTCAAAATTTCATGCATCCTTTCTCACTCTTGGATCGCCAAGCCACATAAATGGTTGGAGATTATACGGCTTAAAATCCTGCTTTTCCCCTATCCCACCCAATTCCACCTTCTTCTTGATTCTTGGATTTGTTCATTTTCTTTGCTCATGGAGATGGTAAATTGATGGACAACAGCTGTATTGAGCACACTCTTCTTGGGTAGAGCATCTGATATGGTTCCTCGATTTTCAGCCTCTGGAACTCCTAGCATTAGTGGAGATAGTATGGAAATTGATGGTGATACGTTTCATCACTCGGAGGTTGTTCCAAAGATGTTAGAGGCTGATGTAGAGTTATCTCGCCATCGCATATCTGTATTTCTTTCTACACATACTGCTTATGAATTGCTTCCAGAATCTGGAAGGGTTGTTGCCTTGGATGTCTCACTACCTGTAAAGCAAGCTTTTCATATTCTCTATGAACAGGGAATTTCAGTCGCCCCTCTTTGGGACCATGGCGTTGGTCGATTTGTTGGAATACTCAGTCCATTAGACTTCATTTTGATTCTTGGAGAGCTAGGGACTCATGGTTCGAACCTGACTGGGGAAGAGCTTGAGACCCATGCTATATCAGCTTGGAAAGAGGGAAAACTACAGCTTACAAGGAAATTTGATGGTAATGGATCATTGAAGCCAAGGCATCTTATTGATGTTGGGCCTCATGATTCCTTAAAAGACGTTGCTTTGAAACTGTTGCAAAACAA | |||||||||
gi|124692436|gb|EH787172.1|EH787172 CNSS27198.b1_L08.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS27198 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): ACGGATTGATATAACCGCCGCCGGCGTATCGGTGTATGCCCGCCGGAGTAAGAAGGCCATCGGAACCTTCATGGCGGTAATGTAATTGCACTCTAATATGGTCGCCTGGCTCTCTCTATTTCCACCTCCATCTCTTTTCAATGTGACTATTTTGGAAACCCTAATCCCCAACTTGTTAATTAGCACGATTTCTCTTCAATTCAAATAAAAGAATGGACGTTATCAAGTTTCAGTCTATTTCACTTGGAAGGATTTAGGAGAGGAAGCAAAATTATGTACGTAGTTGAAAGGTAAATTGTTTGATTCTAATTGTAAGGGGAAAGGTTATGCAATGATGGAAAGCAAGAAGAATTGGCTGAAACAGATGTCTGAAGAAGAACAATTGGCTGAAACAGATGGCTGAAGAAGAAGATTTCGCCGAAACAGACGGTGAAGAAGAAGCAGGAAGGCAGACCAAGAACACAGAGACAAAAAAGGTATAGCTGAAGAGGGAATGGAGAAAGCAAAGAAGCAGCATATAGAGATGTTAACAGAACCGAAGTAAGTTGTACAGACTGCTTTACATTTTCAGATAATCCAACATCAAGTGAATTAAGTATGAAGTCGTACACATATTTGCGCTTATGATATCCTAAAACTGCTTATTTCAGCACGTGTTCTTGTTATTATCTCAACATTTGTGCTTAATCACATTCATGATTCATGTGAGGCTTCTTTTTGGATTTTAATATATATCCATCTTTTT | |||||||||
gi|124689501|gb|EH784237.1|EH784237 CNSS23472.b1_O11.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS23472 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): ACACCAGATAGATATGGCGCTCAGTTCACTTTCATCACTACCAATCAAATCGTTAAAATTTTCACCTTCCTTCAATCCAAATCCAAATCCTCCATCCAAATCCCTAATCTGTCGATTCAATCCACAGAATAAAGATGATGATATACAACCGAAGAGATGGAAAGCTCTGGTTTCAACTGCATTGGCAGCTGCTGCCGTGATTACCTTCACCACCTCTAATAATATGTCTGCCTTGGCTGATCTTAATAAGTTCGAGGCTGATATTCGAGGTGAATTCGGCATTGGTTCAGCTGCCCAATTCGGTTCTGCTGACCTCAGGAAGGCAATTCATGTGAACGAGAATTTCAGGAGAGCAAATTTCACATCTGCTGATATGAGAGAATCAGATTTCAGTGGTTCAACATTCAATGGTGCATATCTTGAGAAAGCAGTTGCTTACAAAGCAAATTTCACAGGGGCAGATCTGAGTGATACATTGATGGATTGCATGGTCTTAAATGAAGCTAATCTCACAAATGCCATCCTTGTAAGGACAGTTCTCACTCGCAGTGATCTTGGGCGTGCAGTTATTGATGGTGCTGACTTTAGTGATGCTGTTTTGGACCTTACCCAGAAACAGGCTCTTTGCAAGTATGCAAGTGGAACAAATCCCACAACAGGGGTTAGCACAAGAACAAGCTTAGGGTGTGGAAACAGTAGACGGAATGCCTACGGTAGTCCATCTTCCCCATTGTTAAGTGCTCCACCACAGAAACTCCTAGATCGTGATGGCTTCTGCGATGATGGCACTGGACTCT | |||||||||
gi|124658943|gb|EH753688.1|EH753688 CNSL12928.b1_O16.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL12928 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): AGCAGGCAATGTATCGGCTTTTGTTTCATCTGTATCTGCATCTGAATGTTTCATTCCTCAGCAATCAAACTTGCAAGATGGTAGATATGGTACGTCTATTAATCAACCAATGTCTATGGGACCAGTTAGCTTCAGTCATCAGTTTGACAATCAGTTTCATCAGCAAAATAATCTTTCCGGAACTCGACCAACTTTCAATGCAAATCCATGTGGAAATGGAGAGAAAATAGGCATTGCCTCCCATAACATGGTATCACAATTACAGCCTAGTCTTTTGGACAAGAATCTGCCTATTGAGGAAGCTCGAACACCAATAGATAACATTCGTGCACAAACTGAAGCTCATAAATCTTTACTTGGTTCTAATCTTCAAGAGTTGATAAAGTTTCTCTCTGCCAATCATGGTTTACCAATGATAACACCTCCTGAAATGGGAACTCCCGAATACCTAAGACTAGTTGAGATCTTGCACCAGAGTTCTGTTCAATCTAATGGGTTTTCAGATCAGTTAAATGGCAGAGGGTGTCCTCGGGAAGAATTATCTGGTGGATCAGAACAAAGCGGTTCTAATTCAAACGTTGGAGGAACAAAAAAGACCCCAGGTGTCGAGAACATCAATGGTGGCAGTCATCCCGAAGGAACTATGAAAGGGAAGGAGGTAACAGAAGATGAAACCACTATTTGTAGTGATAATCCGGAGAAAATGCATGGGCGTGGCCAGAAAAATGATTCATTTCTTGGTCCTCCAAAGACAGATGTAAAGAAGCTGCCTTCTCGTGTAGCTACTGAAAAGCTGTGGGAG | |||||||||
gi|124674055|gb|EH768795.1|EH768795 CNSM1594.b1_C15.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM1594, TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CACATTACTCTATATCAAATGGCTTTATCACTTACTTGTTCCCTGGTGCGTCTTTTGGCTACTTTGTACTCATTTCTTACCCTTTGGGTCTACCCCTGGTGTGGCCCCTGGCTTTTGGGATACGTTTGTTCTTGCCTATGTTGAAAGGTTATTCAGACCCACATACAAAAAGGATGATTTTGTGTTGTCAAAGAAGTTGGGTGAGGGAGCTTTTGGTGTTGTTAACAGAGTTTCCTCTAAGAAATCCAACTCACAGGCTTACTAATTAGTACTTAAAAGAGCTACAGAATATGGTGCGGTGGAGATATGGATGAATGAACGTGTGAGAAGGGCCTGTGCAAATAGTTGTGCTGATTTTGTATATGGCTTTCGTGAGAAATCTTCAAAGAAAGGAGCTGAAGCTGAGTATTGGCTCATCTGGCGGTTCGAAGGGGAATCCACACTTGCAGAGTTGGTTCAGAGTAAAGAGTTTCCCTATAATGTTGAATCAATGATACTTGGAGAGGTGCAAGACTTGCCTAAGGGATTGGAAAGAGAGAATAGAATCATTCAAACCGTTCTGAGGCAACTCTTGTTTGCATTAGATGGTCTTCACTCAACAGGGATTGTCCACAGAGATATCAAACCACAAAATGTTATTTTCTCCGAAGGGTCTCGCACATTCAAGATTATCGATCTGGGAGCTGCAGCTGATTTGCGAGTAGGCATCAATTACATCTCCAAAGAGTTTCTTTTAGTCCAAGATATGCGGCACCCGAGCAATATATTATGAGCACGCAAACACCTTCTGCGCCCTCAGCTCCCGTTGCTGCTGCACTTTCTCCGTTCTATGGCAGTTGAACCTCTCGGATCG | |||||||||
gi|124664395|gb|EH759137.1|EH759137 CNSL510.b2_L07.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL510, mR TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGATTGGGACGAAGCGTAGCAGGGTGAACTTTTTGAAGTTTTACATGGTTGGATCATCCATAGGAATACTTGTCTCAATTGCTTCTGTCATCCAAAGCAATCTTCAACTAAAGGTTGTTCATGACCCGGGTAACTGGGAAGCAGAGAATTTTTCTCTATTGAAGATTGCTTTTGTTTCTGCTGGACTGTTTGTACAAATGTTTTCTGTCATTACAACATCATCTCTCGTCGGAAATATGTCGCCTCCAAAAAGAGCTTCTTGACTTATTAAAATCGTCAGTAGTACTTGTCATCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCCCACTAGAGATACATTTTTCATATTGCCTTATTTTTGTTCTTTATTTCTCCTGTATTGTAATACCCATGAAAACTTCTTAGAATCATGAAAAATGATCGGTACAATTTTTGGTATATCTCTGAGTACGTAGCTGTTGTGAGGTATGGTACGGATTTGATCTTTTGATTGCCTGTCAAGCTGTCACACTCGGGTGCTTTTTCGGAACTTCCTTCAATCTAATTATATTCTTGTGC | |||||||||
gi|124678203|gb|EH772943.1|EH772943 CNSM5424.b1_O11.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM5424, TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGTTAGGGTCTCTCCTTCTCTTCCAAATGTGGAGAAACCAACTTATAAGAACACTCTTCAATCCCAAAACCCTAGCTCAATTACTCGACAAAAACATCGCCCAATTCCAAAATCAAACAAATTTCTCAACCCTCCGTGGCTTCAATACCAACGAACGAACTAGGGTTTCGAGAAACCCCCAAATTCAATTGACATGGAGCTCCGAATTTCTTGGAGAAAGCTTCGGTTTCTGTTCTTCACGGTCTCACAACAAAACCAGGTTTTGTTGGAATTGTAAGAATCAGGGGCCGTTTCTGAGTTGCCAATCTTGTGGGAGTGTTCAACCTGTTGATCATTCAATTGATATATTTCACCATTTATGGGCTAGATCGGAAATTCGATATACAGGACGGAAGTCTTGAAGGGAAGTACAAAGACTGGCAGAAAAAGCTGCACCCTGATCTCGTTCACACGAAATCCCAGGAGGAAAGAGAGTATGCTGCTGAACAGTCTGCTGGGGTTATCGATGCGTATGGTACACTTCGAAAACCACTGTCTAAAGCAATTTACATCAAGAGACTCGAACGTGTTGAGGTGGACGAAGAACAAACCGTCACAGAACCAGAATTGGTGGGTGAGATCATGGAAATTAGAGAAGCCGTGGAAGAAGCCACACATTCTCAAGCACTAAATCAGATTCAATCTCAGATGGAAGAAGCTGAGGCGTTGGTATGAGCTGTTTGCACATGCTTTTGAAAGTAAGAGATACGACGAGGCTGTAATATCGATCCAGAGAATGACTTACTACTATCGCGTGAAGGAGGAGATTG | |||||||||
gi|124683040|gb|EH777780.1|EH777780 CNSS16600.b1_O21.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS16600 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GTTTTAGGGAAAGAAAAAAATATTGGGTAAGAGAAGAGAAAGTGGCGGGGGGGGTTATCCCTCCCAACCCCATCTCCAATTAAAATTGAGAAATAACCGGAATGGGCGTGGCCCAGGGGCCCCCGAATGGGCCCTGGTCCTCCTCCCAATTGGAAACCCGCCAAAAAAACTTTCCCTTTCTCCCTCATCCTTATGGGTATCCACTTCCACCCTTAAAAAATAAAAGGCCCACCACCCCTATTATCTCTTCCTCCCTTATTGGAACCACCATTAATCCCGTATTTTAAATTTCCAAAGCTGCTGTTTTAAGTGTAAGAAGGTATTCCAATGCCCGTTATTACACCTCTCTGGGGCTATTTGGCATTTCTGGACCCGGGCTTTGGGCCCCTATCAAGCGCTCTGTTAAATCCAAAGGGGTGCAAAAAAACTTTATACCGGAGGAAAAAATAAAAAAAGGGCCCAACCCAGTGGCTGGAAAAATTCTTTCCTTCTTCCCCCCTAACAATTTCCTGGGCTTGGAAAAAGGAAAAACCCTCCCCTTCCAAAGCCTGATGGTTCCCAACAAAAGGCAAGCGGCACTGCTGACATTCTGCACGTGTATAAATATGGCAAGTGGAGCACTGGTGCTTACCCTCCCCCTGCCCAAAGTTGGTAACAATTGGTTCCCCCTCCCCCTTCTCAATCCCTTGGCAGGAACGTATTACTGGAAACCAACGTCCAGAAAAGAACAA | |||||||||
gi|124690904|gb|EH785640.1|EH785640 CNSS24891.b1_F08.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS24891 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GTTAGGGTCTCTCCTTCTCTTCCAAATGTGGAGAAACCAACTTAGAAGAACACTCTTCAATCCCAAAACCCTAGCTCAATTACTCGACAAAAACATCGCCCAATTCCAAAATCAAACAAATTTCTCAACCCTCCGTGGCTTCAATACCAACGAACGAACTAGGGTTTCGAGAAACCCCCAAATTCAATTGACATGGAGCTCCGAATTTCTTGGAGAAAGCTTCGGTTTCTGTTCTTCACGGTCTCACAACGAAACCAGGTTTTGTTGGAATTGTAAGAATCAGGGGCCGTTTCTGAGTTGCCAATCTTGTGGGAGTGTTCAACCTGTTGATCATTCAATTGATTATTTCACCATTTTTGGGCTAGATCGGAAGTTCGATATAGAGGACGGAAGTCTTGAAGGGAAGTACAAAGACTGGCAGAAAAAGCTGCACCCTGATCTCGTTCACACGAAATCCGAGGAGGAAAGAGAGTATGCCGCTGAACAGTCTGCTAGGGTTATCGATGCATATGGTACACTTCGTAAACCACTGTCTAGAGCAATTTACATCATGAGACTCGAAGGTGTTGAGGTGGACGAAGAACAAACCGTCTCAGAACCAGAATTGTTGGGTGAGATCATGGAAATTAGAGAAGCCGTGGAAGAAGCCACAGATTCTCAAGCACTAAATCAGATTCAATCTCAGATGGAAGAAAAGCTGAGGCGTTGGTATGAGCTGTTTGCAAATGCTTTTGAAAGTAAAAGATACGACGAGGCTTTAAAATCGATCCAGAAGATGACTTACT | |||||||||