| mature miRNA: TTTGGATTGAAGGGAGCTCT species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90512147|gb|DY974005.1|DY974005 CLSM7668.b1_H22.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM7668, mRNA sequence TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): AAAAAAAAAGATCCGACCCGGATAACTCTCCTTCCTCCCACTTCATAGGAGCTTCCTTCAATCCACTGCACAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGATAGAGTTATTATGTTCATAATCCCAACAACAATTTCAGGGAAATAAAATGGGTAATTGTGCATCGGCCCAATTTAAAATAGTTAGTTCAAAGAAACCACGACATGTTCGTTCTAGAAAGATCCGGAAGCATGGAAAGCCATGGAAGAAGAAGAAAAGCGAGGCAGGAAACCTTGTTGCTCTTACTGAAATTGTTCACACAACAACCACTTCCACTATCCAAGTCACTCAAAGAGAATGGCATCAAAGTCAAATTGATTCTAATGTGATTTCTCAAGAAGAATCATGGTTTGACTCGGTTAGCAAACTTGAAGAATCAGGTTCGGATGATGACTTTGATAGCATGGATGGAGATGAAGAAGTGATTGAATATGAGACATCTTCATGCATCATTGGAAACAATTGTACACAAACTGAGACAAGGACATCAACCGTTATCAGGCTTTCATTAAAGAAAACTTCAATTGATGGAGAAGAATCCATGAANNGCCATCTTCTGGGAAGTTCTTTTTTTTGCCCCGAGCAGGACTCTTGATTCCATGTTGTACAGATGAGAAGCCG | |||||||||
gi|90507637|gb|DY969495.1|DY969495 CLSM2234.b1_D08.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM2234, mRNA sequence TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGCGGGGACCTTCGCATCTCCTTGTTTTTCCCGTCAAATTCTCGATCTCCCCTCCATCAAATCTCTCTTCAATCCAAGTCAGAAAATGGAGTTCGAATCCAACAACAACATTGCTGAAGAAAGCAACAACAATCACGGATGGCAGAAGGTTACTTACCCTAAGAAGCAGAGGAAGAATCCGGCGAAGCAGCAACAACAGCAGTCGACGAAGGTGTTTTCTAACGGATCTTCCATCCCCGCCGTTGATAATGTATTCACGTCAATTGAGAAGAAATCGGAGGAGCGTAGGAAGCTTATTGAAGCTGAGAGGTTAGCGAATTTGGCGATGTATGATCCCGCTCCTCCGACCAGATCGTCGAAGAAGAATAACTACTCTGATTATGACGATAGCGATGAAGAGGCTGTTGAAAATGGTGCGGCTGGGAATGGTGTTACCGAGGAGAAGGAGACGAAGCCAAAGAAGGTGAAGAAACCTAAGGTTACAGTTCCAGAAGCGGCGGCGAAGATCGATGCCGCCGATTTGGCTAGTTTTTTGTCCGATGTGACGGCTTCATTTGAGACGCAACAGGATATACAGTTGATGAGGTTTGCTGATTACTTTGGAAGAGCATTTGCTAGCGTTAGTGCTTCACAGTTTCCATGGGTAAAGTTATTGAGAGAATCTGCTGTTGCAAAGGTTGCAGATAATCTAGTGTCACATATCCCTGAAGCTGTTTACAAAACATCAGTTGACTGGATCAATAACCGATCTTTGGAAGCTCTTGGATCTTTTGTCCTCTGGTCTTTAGACAGCATTCTTGCTGACTTTGCAAGCCAACAAGGCAATGCANAGGGATCCAAGAAAGTTGCCCAAAAACATCCTCAAATCTCAGGTTGGGATTTTTGTAGCATTAGCAATGGTATTGAGAAGGAAACCTGATGCTTTAAT | |||||||||
gi|22257203|gb|BQ870663.1|BQ870663 QGD9L04.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGD9L04, mRNA sequence TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGAGTTGCCGGAGAGTCTCGGTGGTCTTCGGAACTTGACGGTGGTTTCATTGAAGAATAATTATCTTCATGGGAAGATTCCGAATGGGTTTGATTCGTTGAAATTTCTAGATCTGTCTGCGAATTTCATCAATGGGTCATTACCTAAAGATTTTGGGAGTGGTGATCTTGTTTACTTTAACGTTTCTCACAACAATATCTCCGGAGAGATTCCACCGGAATTCGCGAACAAAATTCCGACGAATGCAACCGTTGATTTGTCGTTCAACAATCTTACTGGATCAATTCCGGAATCCAGTGTTTTCTTCAATCAAAACGAAAGATCCTTCGCCGGAAATTCACAGCTTTGTGGGAAGCCATTAGACAATTTATGTTTAATCCCTTCCTCCGCTTCCACACTACCCAACATCTCCTCACCAACATCACCTCCGGCGATGGCCGCCATACCCAAAACCGCAGACTCATCTCGTTCAAGCAATTCATCAAACAACTCAAATGCATCTTCAAGAACCGGTTTCAAAACCAGCACAATCGTCGGAATCGTTGTCGGAGACATCGCCGGGATAGCTATATTAGCCGCGATTTTCATCTACATATTGAAAAAACGCAAAAGGGTAGCATCAGAGAGCAATAAAAAGCACGGCAACGTCGGCAACAAAGAATACGACTGGGCGTCGTCGTCGGAAGATCAAGAACACAAATGGTTACGTTCATGGCCATGC | |||||||||
gi|90506498|gb|DY968356.1|DY968356 CLSM19430.b1_K10.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM19430, mRNA sequen TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CTCCATTTGCTAGTAAAAGTCTCCAATTCGACCACGAAACTGAACCCTTCGCATCTCCATTGTTTTTCCCGTCAAAATTCTCGATCTCCCCTCCATCAAATCTCTCTTCAATCCAAGTCAGAAAATGGAGTTCGAATCCAACAACAACATTGCTGAAGAAAGCAACAACAATCACGGATGGCAGAAGGTTACTTACCCTAAGAAGCAGAGGAAGAATCCGGCGAAGCAGCAACAACAGCAGTCGACGAAGGTGTTTTCTAACGGATCTTCCATCCCCGCCGTTGATAATGTATTCACGTCAATTGAGAAGAAATCGGAGGAGCGTAGGAAGCTTATTGAAGCTGAGAGGTTAGCGAATTTGGCGATGTATGATCCCGCTCCTCCGACCAGATCGTCGAAGAAGAATAACTACTCTGATTATGACGATAGCGATGAAGAGGCTGTTGAAAATGGTGCGGCTGGGAATGGTGTTACCGAGGAGAAGAAGACGAAGCCAAAGAAGGTGAAGAAACCTAAGGTTACAGTTCCAGAAGCGGCGGCGAAGATCGATGCCGCCGATTTGGCTAGTTTTTTGTCCGATGTGACGGCTTCATTTGAGACGCAACAGGATATACAGTTGATGAGGTTTGCTGATTACTTTGGAAGAGCATTTGCTAGCGTTAGTGCTTCACAGTTTCCATGGGTAAAGTTATTGAGAGAATCTGCTGTTGCAAAGGTTGCAGATAATCCAGTGTCACATATCCCTGAAGCTGTTTACAAAACATCAGTTGACTGGATCAATAACCGATCTTTGGAAGCTCTTGGATCTTTTGTCCTCTGGTCTTTAGACAGCATTCTTGCTGACTTTGNCAGCCAACAAGGCAATGCAAAGGGATCCAAGAAAGTTGCCCAAAAACCATCCTCAAAATCTCAGGTTGGGATTTTTGTAGCATTAGCAATGGTATTGAGAAGGAAACCTGATGCTTTAATTACCGCATTG | |||||||||
gi|83998149|gb|DW144258.1|DW144258 CLSZ3535.b1_M19.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSZ3535, mRNA sequence TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGGGGGTCTCTTCGATTCAAAAAAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGATTTTCTGCCGTCGGTTACAGAATATACCTTCTCCGGGCAAAATTACTTCTTATCTTCCGGTGACGATTCTCTAGCGATCTGGTTTTAGAAAACAAACAGAGATGAGTACGGGAGAGCTTCTCAGCATCGAACCTCAAGAGCTTCAATTTCCTTTCGAATTGAAGAAGCAGATCACATGTTCCATGCAACTAAGGAATAAAACGGATAGTTATGTGGCTTTCAAGGTGAAAACGACGAATCCGAAGAAGTACTGTGTCCGGCCTAACACTGGAATTGTGTTACCTCACTCTACTTGCGATGTTATAGTTACAATGCAAGCTCAAAAGGAGGCTCCTCCAGACATGCAATGCAAGGATAAGTTTTTGCTTCAAAGTGCAGTTGCAAGTCCTGGAACTGCACCAAAAGATATCACTCCAGAACTGTTTAATAAAGAATCAGGAAATCAAGTGGAGGAATGCAAGTTAAAAGTTAATTATGTTGCTCCACCCACACCACCTTCTCCAGTAAGAGAAGGATCTGAA | |||||||||
gi|90499528|gb|DY961386.1|DY961386 CLSM11735.b1_M06.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM11735, mRNA sequen TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GACTGCATGATGCCACATTTGGTGGTGCTAATGCTAATGCACCCGGTGGACCAAGCATGATGGAAAGAGTTCCCCCAATGCCCTCCATGGTCATGATGAGTGGTGAGAGTCGGAATCTGGTAGATAGGCAAAGAATTGGAGATGAGGCCATGGAAAAATCTAGAAATTTGAAAGTGACAGAAATCTCTGAACCATCACAGTGTCGATCCTCAAGGCTTCCAGATGATACATCCTCTGCAATGCGGGTTACAAGATTGATTTACACTAATTCAGGAGTTGCAGTCTTAGCTCTAGCAGCCAATGCTGTCCATAAATTGTGGAAATGGCAGAGAAATGACCGCAATTCAACTGGGAAGGCAACTGCTAGTGTACTGCCTCAATTATGGCAACCAGTGAGTGGTATATTGATGACAAATGATATCAGTGAAACAAACCCTGAAGATGCCACCGCATGCTTTGCATTATCAAAGAACGACTCCTATGTTATGTCTGCTTCTGGTGGAAAGATTTCTTTGTTCAATATGATGACCTTCAAGACAATGAGTACATTCATGCCCCCTCCACCTGCAGCAACCTTTCTGGCTTTCCATCCACAAGATAACAATATTATTGCCATAGGCATGGAGGACTCTTCAATCCAAATATACAATGTCCGAGTGGATGAGGTGAAAACCAAACTTAAAGGCCATCATAAACGAATAACAGGCCTGGCCTTCTCTAATGTCCTTAATGTGTTGGTATCTTCTGGTGCTGATTCTCAGTTGTGTGTGTGGAGCACGGACGGATGGGAGAAGCANNACATCAAACAATTACAAATTCCAGGAGGACGTGTCCCTGCTGCCCATGCTGATACACATGTCCAGTTCCACCAAGATCAAACTCACTTGCTA | |||||||||
gi|22235994|gb|BQ850525.1|BQ850525 QGB12N19.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB12N19, mRNA sequence TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGCACAGATAACGAAATCAAGAACTTTTGGAACACTAGGACCAAAAGAAAGCAACGTGCCGGATTACCAATTTACCCTCACGACATCTCTTTCCAACAACTCAACGATAACTCCCAGAATCAAAACATGCTCATGTTCCCCAATGGCGATTCCGGAATTTTCCCACCAACCACTAACCTCCACATTCCATCCATCGATTACAAAGATTTCATACTAAATCATGAGTTTTATCAAAATCAAATTCCCACCGAAAGTAGCTTGCTTGATATCGCATTCCCTATGCCAACACCATATCCACCCAAGCGCTTCAGGCCCGGTGGCGGTGGTGGTGGTGGTCTTGGTGATGTTTTTTCTGGCTTGAATGGATATGAAGATGAGAAGATTGGTCAAACTTTGACCCCATCATCATCATCTTACTTATATAATACATGCACAGGTAGCCATGCCTTTATAAATGGCAACAATTGTTCATCTTTTGAGCCTAATTTATGGGCAATGAAGAATGAGCTCCCTTCACTCCAATATTTTCATGGTGCACCACCTTCTTCTTCTTCTTGTTCTTCCTTTGAAAATGAGTGGGCGGAATCTGATTTCCACTCACGTANGAACAGTGGTCTGTTAGAAGCTGTGCTCCATGAATCAGAAACCTTAAAATCTCGAAACCAGGAAATGATCTCACATGGTGATGATCAGAAATTGGGTTTCGGATGTTAT | |||||||||
gi|90500125|gb|DY961983.1|DY961983 CLSM12304.b1_O03.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM12304, mRNA sequen TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): AAACACAAAGAATCTCACTTCCTCTTTCTGATTCTATCTCTCTAAATCTCCACTGTTTTCTCTTTCTACAAACCGATCTTCTTCTTCTTCTTTGTGATCTTGTTTGATCTTCTGTTACTAATATGACAACTTCAATGGTGATGGAGATGAACCTCGGTGAAAATAGCGGTGTGAAGCAGAGTGTTAATGGCGGTGGAGGGAGGAGGAAGACGAAAGGGAGCGAGTTGACTCAGAAGAAAAACAAGCAGCCTCAGAGAGGTATGGGAGTTGAACAGCTTGAACGCCTTCGGTTACAAGAGAGATGGAAGAAAATGACTGAAGTACCCTCACTCCATCATCCTTTTGCTCTCCCTGCTTTCAGCTCCTCGTCGTGCACTACTGTTCCAAATCCAAACACCGGTGTTCAGTTCCGCCCTGCGCAAGGTGCAGCTCCGGCGATGTTGTTTCACGGGATCGGAATCCATGGAACGAATCTGTTTTCTACGGCGGAGCATGTCATGGACCCGTCTGTGAATGTTGGATTCCGATTTGATAACTCGAAGGAACTCTCTTCAATCCCAAACTACGTCGTCAAATGTGCTTCCGATGGCTGCGGCGTTTGTCACAAGAAAAAGCGAATCCACGGTGGAAGCAACTCCTGCTCTGTGAATCCGTTTCGTAATCTCGCCGGAAACAACTCCGTCGTCGAGATGATCGACGCAGCTAANACTCGTCTCTGTTCAGGACAGGTGACGGAGGTTATTTCGGTTTACCGGAACGGTGGAAGTGCGATGACAGAGTATGAGTTTTTCCCGGAAAAAGGTGGCAGAGGAACGACGTCAAAACATGTTGTGGAAGTGGA | |||||||||
gi|90498569|gb|DY960427.1|DY960427 CLSM10761.b1_A03.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM10761, mRNA sequen TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGCGGGGTGGGAGAGAGGGCCCCCTTCAATCCAAACCCTCGCCTCTTCCCCTCACCATCACCGGTTAATTCTCTCCGGCGACTACTCCTCCGCTCTCCGCCTCATGGCTTCGCGCCATTTTTTTGCTGGAGATTAGTTGCCGGAAGGTAGAAATGTCGTTCTGATTCGACGAGCTCCCTTTTTTCTTTCCACTTTCGTCGTCATTGTGGTTTCTATGGCGTCTGCGATTTTATCAAGCAGAAATGAACGAAACTCGGGTGATTTTATGAATAAATTTACTGAAAATAGTCATCTAACTTTCTCCAGATTACAGAATATCACTTGCCCTACTCCTCACTCTAACCCTAACCCTAATTCTAGCCGTTTCTTTAGCAGAAATGTTCATTGGAAAAATCAGGAGCAAATGCGGTCTTCTGGTCCGTCTGGAGAGGTGTTTATCGGTTCGTCGATCAATTCCGTACCGGCGAGCTCTCATGGATACAGGTACATTACCTATCGTCTTGGTTCGTACACTAGATTAGAGCTTAAGGAGTTGAAAAAAAAGTTGGTTCTGGATCTGGAACGGGTGAGGGACCTCAAGCATTGGATCTGTTCGACGCCGATACCCAAAAGGCATTATCAACCACCGCCGCTGGGGTTACCGCCGGCTCCTGAAGCTGATTTGACGGTGAAAGAACGGCCAAAGAATGCAGTCGGTCAGAAACGTGCGAAACCGTCTTCTTCAGCCAGGGATACGAAGAAGCATTGTGGTGCTCGTGTGAAGAACAATACGCAGAGGAGTAAGCTCGTGATGAAGAAATGTAGTCAAATTTTAGCTAAGCTGATGAAGCACANACACGGTTGGGTTTTCAATACTCCAGTTGATGCGGCTGCTTTGAAGCTAAGTGATTATCAT | |||||||||
gi|83979860|gb|DW125969.1|DW125969 CLSX2472.b1_P17.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX2472, mRNA sequence TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CAGTGTGTGTGTGTGTGGTGAGAAGACACAGAGATTGAGGGATTTGGCAATGGAGACTGCCATTAGCCGTCGACTCGCTCCTTCCCCTAACCATGGCCTTCTTCAATCCAAACCAGGTGACAAATACCTGCTTCATAAACAAAGCACAAAATGGATCACAGTTATGACAATGGCGCCTCCAAGGCTGGAAAAGGGTGCTGGGGTGTTAGATAAGCCAGTAATAGAGAAAACAACTCCTGGAAGAGAGTCTGAGTTTGACTTGAGGAAATCAAGGAAAATGGCACCACCATATCGAGTGATGCTACACAATGACAACTACAACAAGAGGGAATATGTTGTGCAAGTGTTGATGAAGGTTATACCTGGAATGACAGTTGACAATGCAGTTAATATCATGCAAGAGGCACACATCAATGGGTTGTCTGTGGTGATTGTGTGTGGGCAGCCAGATGCAGAAGAGCATTGCACACAGCTCAGAGGGAATGGGCTTTTGAGTTCAATTGAACCGGATAGTGGAGGGTGTTAGAAAGGTGAGTTAGTAAGTTAAGTACATGATGGGTCTAGTGACACTATAGTCAGTCATCTGTGATTTGTAAGTACTAGGATTATGGCTATATCAATGTCAATAATGAAAAAGAATGATATTATATATATATAATATATTGAATATGATAAGACTTATATT | |||||||||