| mature miRNA: TTTGGATTGAAGGGAGCTCT species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164391793|gb|DB923332.1|DB923332 DB923332 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_010_B2 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAATGGGAGCGTGTGCTTCGAGGCCAAAGGATTGTGTTGGTTTATCGTCGAGGAACAAGAAGAAGAACAATGGGAAGCCCAGAATAAAGAGAAGAAGAGTGATCAAAAGACGTGTTTCGTCTCGTAATATTGAAAAGGCTGATTTTACTGCGCAAACAGATCGTTCTTATACTAATCCTACTTTGCAAGGAAGCACTGATGCTGCTGCCTTCTCTGATGCTATTTCAGTTGTTGAATCTGAATGGGAAGATGAGTTCTACAGTGTTCATGATGATGGGTTCTCTGTAATTGGATCGGAGAGTGTATTGAGCGTTTCATCGCCTAGAGATTTTTTTAATCCAAAGGAAAATTTCGAGAA | |||||||||
gi|164377079|gb|DB930868.1|DB930868 DB930868 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_031_A0 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGGTGACTTCTTTTCACTCCGCCTGCCCTACTGATTATATAGCAATTCACAGTAGTATCTAACCAAATCCAAGTTTTCCTTTCAATTCAAAATGAGGAATTTGCGATTTATATCTCCTCATTTATCAAGATTCCGCAAAACCCTCTTTCAAAACCCTACAAGATCACTACCCAAAACCTATGTTTTCACTCGTCACTTCACTTCCACTTGTCAAGAATCTAGCCCACCTGTTCCATCGGAGAAACTCTCGGCCCTCGTCGATGAAATCTCCCAACTAACGCTTCTCGAAATCTCTGACCTAACCGAGGTCCTTCGAAACAAGTTAGATATCAAGGAGATGCCGGTAATGGCTGTAATGATGCCCGGAATGGGGTTCAGTGGCATGAAGGGCGTTTCCAAGGGAGGGGCAGGTGCCGCTTCCAAGGGAGAGGAGAAGGTGGAGAAAACGGTGTTCGATGTGAAGCTTGAAGGGTTTGATGCCGCCGCGAAGATCAAGGTCATTAAGGAAGTTAGAGGGTTTACAGATTTGGGGCTGAAGGAGGCGAAGGACTTGGTGGAGAAGGCTCCCACGCTGTTGAAGAAAGGAGTAACGAAAGAGGAGGCTGAGAAAATTATGGAGAAAATGAAAGGGGTTGGCGCCAAAGTCAGCATGGAGTGA | |||||||||
gi|164389651|gb|DB928067.1|DB928067 DB928067 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_023_D2 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GAAATTCTTCAACTATATAATTCTCTTGATCTCTTTTTAATCCAAAATTTCATTGGTTTCTGTTTGTTTGATGGGATTTGCTTTACGAGAAAAGTCATGGGAAAGTTGTCTTTCAAGGATTCTCTCAAGGCTCTCGAAGCTGATATCCAGCACGCCAATACTCTTGCTCTAGATTATCCAAGGGAGATTGATGGAGCTCGTCTTCAGATGAGACTATCCTACAGTCCAGCAGCTCAATTTCTTCTTTTTCTTGTTCAGTGGACTGATTGTCATCTTGCTGGTGCCCTTGGTTTGCTTAGAATTCTGATTTATTTGGTATGTTATTATTTTCAGTTTATACCCTGCCCCCCCCCCAAAAAAAAAAAAAAAATAAATAAATAAATAAAGGGTTATTTTGATTTATTTGGCCTTCTTATCTGTCCTTGCAATTATTTTGGGTTTATCATTTCTTTCTTTGTTTATTTGATTATTTGCATTGGATCACCTTTTAACAATGTAGTGATAATGTTAAAAATTCTTGCCAGCTGTG | |||||||||
gi|119005524|gb|DV448259.1|DV448259 CV01024A1E01.f1 CV01-normalized library Manihot esculenta cDNA clone CV01024A1E01.f1, mRNA s TTTGGATTGAAGG-GAGCTCT EST sequence (targeted fragment marked with yellow): CAATTTTCNTNNGTCTCTGCCATGTAATAGATAGTAGATTGGGGATTTGGAGGTGTTAGGGTTTTTTTTTTTTTTGGTACTCTAATGGAAATGGAGAATACTTCGATAGATCAAGAGAACCGGGCTTGAAGAAGCCTCGACTGGCTGAGGATCAAACAAACATTGACGCTCGCCCTTTCCCTCAGAGTCGGAGGCCAGCTACAGCAGTGCCAGCACCGTCTTCTGCTGCGAGGTATAGGGATACCAGTGATAGAGAATCGGGGAGCAATAATTCGAGCCGTACCGGTGCGTACCAGCCACAACCACAGCAATATCAGGAGCTCGTGAGCCGGTACAAGGCAGCTCTGTCAGAGCTCACTTTCAATTCAAAGCCGATAATCAGTAACTTGACTATAATTGCTGGCGAGAATCTCCATGCAGCGAAGGCTATTGCTGCTACTGTCTGCGCTAACATCCNNGAGGTGATCCCCAGTTTTGTTTCTTTTGGTTATGGCGCCCGATTGTTGTTTGAATCGATTGTAAAGTGCAATTATTCTATAGATCCAAAAGAAGAATAACGGTGACCTTGTAATTACAGATTAATGACAACTTCTTATGATACAAAAAAAAAAAAAAAAAATCG | |||||||||
gi|164404206|gb|DB947933.1|DB947933 DB947933 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_029_J1 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GCCTAGCTGGTTTCAATAGGGGTTTCCTTCAGTCCAATTCATCACAATTTCAGAATTTGCCTCACCTACAGAGGTAAAAGAATCACCCCTTAGACGGCTCAACAAATGTACCTTTTTTCATTGCGACAGTTTTACGCACGCATACACAATTGGAGCATCATCACCAACATCAGTTCCCACCACCTGGGTCGCAGCTCTGCTACGGAGATGGAAGCAGGCATTCTGACCAGAAAGGCAAAGGGAAGAACTGAAAACTGTTTGGAAACCTTCCATCTTTTTCCTGGAAAGCGAAGATGACAAGCCAGCATAAGCCTGGCAATGGGAGATGCAGCTTTAGCTAAAGTGTTGGTGTTGAGCTTTATCCATTTTGAAGTGGGTTCAGGTTGCATTCTCATATGTCAGGATGCATGTTATGTATGCGTGCAAAAAGCAGTCGTGTGTTTTTTTGAAATATGTAAAACAATTCGTTTGAAGTGATTCTTTTTTTCCCATTGTTAATGATCATTCTGAAATTGTCTATACCATT | |||||||||
gi|56923531|gb|CK647868.1|CK647868 c.03.L22.5 CM523-7 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CTCAGTTACTCTTTCCACAAATTTCCTTATACACTGTTCTAATAGATTTGTTTTTATTGCATAGTTGCCACCTGAGCTATTCCATTGTTTCAGTTACTCATATTCAGGATAGAGGTTCACATCAAACATTATTAGTTGTTAACTTCAGACATTTCTCTCTAATTTTCAGGAGAGGAAAACTTCAGTGGTTGCACGGTTGGGTGCTCAACTCCTTTTGCTTTTCTTGAGGTTGAACATAAGAACAATAATGAAGGATTACTATCCAACGAAAACAGAGAGAGCTGATGATTGGCTTATTAACGAAATGCTGAGAGCTTCCTTCGATCCAGGTGTAATAGTGGTTCTGGAAAGTATTTTCAGTTTGAACCTTTCACTTCCCATTAATTATCTCTTGGAAGGTTTCAAGGAAAAGGCTCTAATCATACAGGTTCACTCTGTATGCTGGGGAACTCGACAAACTATTTGTTTTTCTTCCTTTCCTTCTGTTGCTTGATAATCCAGTTGCAATTGCATACTTATAAGCGTTCCCGTTGCTCCATTTCT | |||||||||
gi|164378446|gb|DB934987.1|DB934987 DB934987 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_042_D1 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGTGAGTTCCCTTCAATCCATTTCATTAAGATCTCACTTTCCTTCCTTCTTTCTTTGTTTTCCTTCCTTTGATTTGGGTATTGGGTTGTTTGTTTCTCTTGTGTGTATGGAATGACGGACTATCGGATATCATCCACGATGAATCTGTGGACGGACGATAACGCATCGGTCATGGAAGCCTTCATGAACTCTGATCTCGCCGCTCTTTGGCCGCCGCCGCAATCCGCCGCTTCTACTTCCACTCCTGCGCCACCCAACGCCGACGCCAGTAGGACCCTTATCAACCAATCTCAGCAGCTTTTTAATCAGGAAACCCTCCAGCAGCGTCTCCAGACCTTGATCGAGGGAGCCAGGGAGAGCTGGACCTACGCCATCTTCTGGCAATCGTCGTATGATTACTCGGGTGCGTCGGTGTTGGGGTGGGGTGATGGGTACTATAAAGGAGAGGAGGATAAGGGTAAAGGCAAATCTAAAGGTTCTAGCTCTTCAGTTGCAGAGCAGGAGCACCGAAAGAAGGTGCTACGGGAGCTCAATTCGCTGATCTCAGGTCCCACTGCCGTCACCGACGATGCTGTTGATGA | |||||||||
gi|164405417|gb|DB934105.1|DB934105 DB934105 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_039_N1 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GAGTCACGTCCTACCATACCCACAAAAACCTTCCTTCAATCCAACTCAATGCCCACACAGAAAATCTTGACCTTTCTTTCTCCCACAATCCCAAATGAAATCAAGCATACTAAATCAAATTAAAAATCTGAAAAAGACTGTTTCTTGATTTCAATTTCTTTGAAACAAATTCTATTTCTTAATTTTCTCAAAAACCCAACAATGACTGAAGTACTCCATTCATCCCCATCTCACTTCCCTTCTCCTTCAAGCTCTTCTTCCACCCCACGTGTCAACAATGATATGCAACGCCAACAACTTCACCATAACCCCACAAGACTCCAAGAAATAGACCAAGAACAGGAACAAGAAGAGGAACAGGAACAAGAACAGGAACAAGAAGAGGATAGCTTCATTGAGAGGAAAATAAGGGAGAGAGAAGGGGATCAGCTGTCACTTCTTGAAATTTTGGCTGCTGCTTTTAGGAGGTCTGTTGTTGGGTGTAGTACTACTGCTGCTATTGGGAGTAAGGAGATTTGCAATATGGAGATTGGGTTGCCCTCTAACGTTAGGCATGTTGCTCATGTCACTTTTGATAGATAGTTCAATGGGTTTCTTGGGCTTGCCTGTTGAGTTTGAGCCTGAGGTCCCCAGGAGAGCTCCTAGTGCCAGTGCAACTG | |||||||||
gi|164401607|gb|DB924848.1|DB924848 DB924848 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_014_F0 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGTTTATAAAGGAGAGAGGTTTTATCAACACCAACAAATTCTTCAACTATATAATTCTCTTGATCTCTTTTTAATCCAAAATTTCATTGGTTTCTGTTTGTTTGATGGGATTTGCTTTACGAGAAAAGTCATGGGAAAGTTGTCTTTCAAGGATTCTCTCAAGGCTCTCGAAGCTGATATCCAGCACGCCAATACTCTTGCTCTAGATTATCCAAGGGAGATTGATGGAGCTCGTCTTCAGATGAGACTATCCTACAGTCCAGCAGCTCAATTTCTTCTTTTTCTTGTTCAGTGGACTGATTGTCATCTTGCTGGTGCCCTTGGTTTGCTTAGAATTCTGATTTATTTGACCTATGCTGATGGCAAGACAACAATGTCTGTTTATGAAAGGAAAGCTACCATTAGAGAATTTTATGCCGTGATTTTCCCATCTCTGTTACAACTTCAAAGGGGAATCACTGATTTGGAAGATAAGAAACAAAAAGAGCTTTGTAGCATCAGATATAAAAGAAAGGATGAGTTGGAGAAGGTCAAACTCTCTGAAATTGACATTGAAAGAGAAGAGGAGTGTGGAATTTGCATGGAGATGAACAACAAGGTTGTATTGCCCAATTGCAGTCATTCATT | |||||||||
gi|164398096|gb|DB937542.1|DB937542 DB937542 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_049_F1 TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): TGGCGAGAGGAATTAACTCAAAAGAAAAAAGAAAAAGAGAAAATTTCTCTTCAACTTCTTTGGTTTCACATAATCAAAGTGTCCTTCTGTAATTTTCGATCTCTTTTCTATTGCTCCCTTCAATTCGAGCTCGATTCTCGCTGGCCCTCTGATTCTCCATTTCTCGGAAAATGGATGGGTCAACTCACCGAGGTAGCAGTAGTGTTGATGTGTTTTTACCAAATTACAAACTTGGTAAAACTCTTGGAATTGGTTCCTTTGGTAAGGTGAAAATCGCAGAGCATGCATTGACTGGCCATAAAGTTGCCATCAAGATACTTAATCGTCGCAAGATAAAGAACATGGAGATGGAAGAAAAAGTAAGGAGAGAAATCAAAATTCTGAGATTGTTTATGCATCCTCACATTATAAGATTATATGAGGTTATTGAAACGCCTACTGATATATATGTTGTGATGGAGTATGTGAAGTCTGGAGAGCTCTTTGATTATATTGTGGAGAAGGGTAGGCTACAGGAAGATGAGGCACGCAATTTCTTCCAGCAGATAATTTCTGGTGTGGAATACTGCCACAGNAATATGGTGGTTCATAGAGACCTTAAGCCTGAGAATTTGCTTTTAGATTCTAAATGCA | |||||||||