miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTTGGATTGAAGGGAGCTCT
species: Populus nigra
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|161903705|gb|DB891327.1|DB891327 DB891327 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus

TTTGGATTGAAGGGAGCTCT
||||.||||||..|| |||
AAACTTAACTTTTCTAAAGA

EST sequence (targeted fragment marked with yellow):
GGTGCCTTGTGTGTGGTGAGTTGAGCCTGGGGGCCTAGAGTTACATACAGAAAGTTGCACTATCTCTTAGGTTGTCTCTAGTTAACTCTTCTTCTTCTTTGAGAAAGATAAGGATGAGTTATTTAGGTGTTGGTGTTAGTCCTGGGAATGTACCGGTGTATCATGGCACTGACTTGAAGGTTATTGATAGGAGAGTGAGGCTAGCAGAGTTGGTTTTGAGGTGTGTGATCTGTTGTTTGGGAGTTCTTGCTGCTGTTCTTGTTGGTACAGATACTCAAGTTAAAGAAATCTTTTCAATTCAAAAGAAAGCAAGATTCACTGACATGAAAGCTCTTGTCTTTTTGGTGGCAGCTAATGGGATAGCAGCAGCCTACTCATTGCTTCAAGGGGTGCGCTGTGTTGTGGGCATGGTTAAAGGAAGTGTTCTGTTTAGCAAACCCTTAGCTTGGGTTATTTTCTCCGGTGATCAGATGATGGCATACCTGACTATGTCTGCAGTGGCAGCTGCTGCACAATCTTCAGTGTTTGCAAAGTTGGGACAGCCTGATCTCCAATGGATGAAGATATGCACCATGTACGGAAAATTCTGTAACCAGGTTGGTGAAGGAATAGCAAGCGCGCTGTTGGTCAGTGT



gi|161916061|gb|DB908862.1|DB908862 DB908862 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus

TTTGGATTGAAGGGAGCTCT
||||||.|||| ..|| |||
AAACCTGACTTGTTTCAAGA

EST sequence (targeted fragment marked with yellow):
GTGTGCAGCCAGGGTATGGATTGCAAACCTGTTCAAGAGCATAGAACTTTGTTCAGTCCAAACAATGTCAGTGACCATGCATCATATATCATGAACTCTTACTATCAATCCCATGGTCGCAATGATTTCAATTGTGATTTCTCTCAAACCGCTGTCCTCACCAAACTAGACCCAAGTCACGGCACTTGTAAATACAATTGAGTAATAATTTGGGAGTGTAGCTGACCACTAGCAATGCAGGAAGGATCACTAACCAATAAAAAAGAAAAAAAACAGCGAAACATTTGGCATTTTATTTGCCTGTACCATCCATTCTTTATTGCTTTAAACATCTGCTATCTGTAAAAGGATTTAGCCCGTGGCAAGGGACGCTTCCATCTGCACAGCAGCCCTGAAAGTATAGTTATAAAGTCAAGGAATGACAGATGTAATTTTATTAGCTGTGCTTATACATTAATGTTTATGATGTCAGTGGTGCCCTCAAACATTATTGTTCACTCATTTTCATAAATAAAATCAAAGTTCTATGCTGTTGAA



gi|161918481|gb|DB881046.1|DB881046 DB881046 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus

TTTGGATTGAAGGGAGCTCT
||| |||||||.|||. |||
AAAACTAACTTTCCTTTAGA

EST sequence (targeted fragment marked with yellow):
GGGTGAGAGCAAACCGAGGTAGAGTTCACTTTCCTTATCCAAAAGAACCACACAGAAATGCCACAGGCAACGTAAACTAGGAAACCCCCAAAACCAAAAAGATTGCAGATTTCCTTTCAATCAAAACGAAAATGCCCCTCCTTCTCTCCAATCCTCTCACCTCGCTCTCTTCACTTCCCCCCTTTTCATCTCCATCTATGGCCTTCATTGCAACACCAGTTTCCAGGCTAGACGTGAAAGCCTTTGAATTAAAGTTTAAGACTTGGAATGGAATCCGGTTTCAAAACCCAATTCGTGGAAACAGAATTGGTGCAGTTATTGTGAGAGCTTCTTCGGATATTGATGGAACAGCTCCTACAGAGACAAGTGAGCCTCCTGTAGAAAGTAAAGAGGAGGTTGTGGCAGTTGATAAGTTGCCATTGGAGTCAAAGTTACAGGAGAGAGAAGAACAGAAGATGAAGATGAAATTGGCGAGAAAGATCAGGCTTCGAAGGAATAGGCTTGTTAGGAAGAGGAGGATGAGAAAGAAGGGTCGTTGGCCGCCTTC



gi|161929004|gb|DB883302.1|DB883302 DB883302 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus

TTTGGATTGAAGGGAGCTCT
||||| |||||...|||||
AAACCAAACTTTTTTCGAGT

EST sequence (targeted fragment marked with yellow):
AAGGAAATAGCTGGATTTCTAACAACACGACGCTAAAAAGCTCCACCTTCTTCGAATTACCTATACTACCCTTCTCCTTCCCTCCAAAATCCTCCATTCTTTCCCCTCCAATTTCCTGAAATACATCAAATTTTTTTTATCCTTTTGGCTTGAGACAGCAACCATGGAAATAACGAATGTGAAATCTGTTGATCAGGCGGTGGAGGAAATTATGAGGATTCATAGATCTTTACCGACAAGACCAGGGATCGAGGAAGTAGAAGCAGCAAAGACATTGATTCGGAATGTCGAAAAGGAAGAGCAAGCGAGAATGGAAGCGATTTCGAAGCAGACAAAGACCCCAGATGTTCCTCAAGAGTTGTTCATGATCCTGCAAGAAATGCAAAAACAGTTGAGCTTTTTTCAAACCAAAGAACAAAAGCTGGAGGCTGTAAAATTGCTTGATCTTGAAAATGTTCATAACCTGTTCGATGAATTCATTCAAAGAGCTTCCAAATGCCTCTCTTGGCCTCCTCCTTCTACTTCTTCTTCTCCTACTTCTGTTTCTGGGTTTGGTTCTTCTTCCAATTATGCT