| mature miRNA: TTTGGATTGAAGGGAGCTCT species: Populus nigra database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161903705|gb|DB891327.1|DB891327 DB891327 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGTGCCTTGTGTGTGGTGAGTTGAGCCTGGGGGCCTAGAGTTACATACAGAAAGTTGCACTATCTCTTAGGTTGTCTCTAGTTAACTCTTCTTCTTCTTTGAGAAAGATAAGGATGAGTTATTTAGGTGTTGGTGTTAGTCCTGGGAATGTACCGGTGTATCATGGCACTGACTTGAAGGTTATTGATAGGAGAGTGAGGCTAGCAGAGTTGGTTTTGAGGTGTGTGATCTGTTGTTTGGGAGTTCTTGCTGCTGTTCTTGTTGGTACAGATACTCAAGTTAAAGAAATCTTTTCAATTCAAAAGAAAGCAAGATTCACTGACATGAAAGCTCTTGTCTTTTTGGTGGCAGCTAATGGGATAGCAGCAGCCTACTCATTGCTTCAAGGGGTGCGCTGTGTTGTGGGCATGGTTAAAGGAAGTGTTCTGTTTAGCAAACCCTTAGCTTGGGTTATTTTCTCCGGTGATCAGATGATGGCATACCTGACTATGTCTGCAGTGGCAGCTGCTGCACAATCTTCAGTGTTTGCAAAGTTGGGACAGCCTGATCTCCAATGGATGAAGATATGCACCATGTACGGAAAATTCTGTAACCAGGTTGGTGAAGGAATAGCAAGCGCGCTGTTGGTCAGTGT | |||||||||
gi|161916061|gb|DB908862.1|DB908862 DB908862 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GTGTGCAGCCAGGGTATGGATTGCAAACCTGTTCAAGAGCATAGAACTTTGTTCAGTCCAAACAATGTCAGTGACCATGCATCATATATCATGAACTCTTACTATCAATCCCATGGTCGCAATGATTTCAATTGTGATTTCTCTCAAACCGCTGTCCTCACCAAACTAGACCCAAGTCACGGCACTTGTAAATACAATTGAGTAATAATTTGGGAGTGTAGCTGACCACTAGCAATGCAGGAAGGATCACTAACCAATAAAAAAGAAAAAAAACAGCGAAACATTTGGCATTTTATTTGCCTGTACCATCCATTCTTTATTGCTTTAAACATCTGCTATCTGTAAAAGGATTTAGCCCGTGGCAAGGGACGCTTCCATCTGCACAGCAGCCCTGAAAGTATAGTTATAAAGTCAAGGAATGACAGATGTAATTTTATTAGCTGTGCTTATACATTAATGTTTATGATGTCAGTGGTGCCCTCAAACATTATTGTTCACTCATTTTCATAAATAAAATCAAAGTTCTATGCTGTTGAA | |||||||||
gi|161918481|gb|DB881046.1|DB881046 DB881046 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGGTGAGAGCAAACCGAGGTAGAGTTCACTTTCCTTATCCAAAAGAACCACACAGAAATGCCACAGGCAACGTAAACTAGGAAACCCCCAAAACCAAAAAGATTGCAGATTTCCTTTCAATCAAAACGAAAATGCCCCTCCTTCTCTCCAATCCTCTCACCTCGCTCTCTTCACTTCCCCCCTTTTCATCTCCATCTATGGCCTTCATTGCAACACCAGTTTCCAGGCTAGACGTGAAAGCCTTTGAATTAAAGTTTAAGACTTGGAATGGAATCCGGTTTCAAAACCCAATTCGTGGAAACAGAATTGGTGCAGTTATTGTGAGAGCTTCTTCGGATATTGATGGAACAGCTCCTACAGAGACAAGTGAGCCTCCTGTAGAAAGTAAAGAGGAGGTTGTGGCAGTTGATAAGTTGCCATTGGAGTCAAAGTTACAGGAGAGAGAAGAACAGAAGATGAAGATGAAATTGGCGAGAAAGATCAGGCTTCGAAGGAATAGGCTTGTTAGGAAGAGGAGGATGAGAAAGAAGGGTCGTTGGCCGCCTTC | |||||||||
gi|161929004|gb|DB883302.1|DB883302 DB883302 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): AAGGAAATAGCTGGATTTCTAACAACACGACGCTAAAAAGCTCCACCTTCTTCGAATTACCTATACTACCCTTCTCCTTCCCTCCAAAATCCTCCATTCTTTCCCCTCCAATTTCCTGAAATACATCAAATTTTTTTTATCCTTTTGGCTTGAGACAGCAACCATGGAAATAACGAATGTGAAATCTGTTGATCAGGCGGTGGAGGAAATTATGAGGATTCATAGATCTTTACCGACAAGACCAGGGATCGAGGAAGTAGAAGCAGCAAAGACATTGATTCGGAATGTCGAAAAGGAAGAGCAAGCGAGAATGGAAGCGATTTCGAAGCAGACAAAGACCCCAGATGTTCCTCAAGAGTTGTTCATGATCCTGCAAGAAATGCAAAAACAGTTGAGCTTTTTTCAAACCAAAGAACAAAAGCTGGAGGCTGTAAAATTGCTTGATCTTGAAAATGTTCATAACCTGTTCGATGAATTCATTCAAAGAGCTTCCAAATGCCTCTCTTGGCCTCCTCCTTCTACTTCTTCTTCTCCTACTTCTGTTTCTGGGTTTGGTTCTTCTTCCAATTATGCT | |||||||||