| mature miRNA: TTTGGATTGAAGGGAGCTCTA species: Raphanus raphanistrum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161516883|gb|EY896930.1|EY896930 RR1D292TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GTCCTGTTTGAGGATCTCAATTTTGCTACTAGCTTGTTACCTGGAGCTTCTGATATGCTCGCATGCAACATGCTAGGAACTGGTGCAAGTAGCTACACGCCACACAGTAACAACATAAGGCAAGCATTCCAATCTCCGGAACATTTTCAGAATGCTGCTCCACAAAAGAATCTAAGATCTTTTAGTATCTCTGATCATCATCCTATGTATGGTGGAAACCAGAATCCATCTGATGTGATGATGATTCAAGATAGCCATACCTTTACGGATGGCATGCTTCCTACTTCTAAGCCCTTGTTTGGGGCGGTGAAGCTGGAGTTCCCTTCATTCCAATATTCAGAAACTGGTGGATTTGATCAGTGGAAGACGACGACACCGTCGCCTCCACAATCAGATCTACTGGACTCTGTTGATACTTATATTCAATCTCCACCGCCGTTGGAGATAGATGAGCCAGATTGTTTCTCTTCGTGCGACACCGGCTTACTAGATATGCTGCTTCATGAAGCCAAGATCAAAGCTAGTGCGAAGCACGGTTTGTTGTTACCTTCGTCTGAGAAGAGTTTCAGTTCAACTACTTTTGCAACCGATGCTACTCAGAATGTACCACGAGTAGGTGAATCAGAAGCTTTCCAAAACATTTGGACTCGCTCCGAGATTCCAATTCCCACGCAACTTAGTGCGGGTGGAAACTCATCAGGTACGTTGTGAGACAGAAGAGTTGGATCAGTATGGGAACAATTAGAGTTGATGTACACGACTGATGTTTTACTTG | |||||||||
gi|154260215|gb|EV571204.1|EV571204 RR4A620JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TGGAAAAGAGTTGGAGCTTACTTCAATGCAAGTCCTCATCTTGTCGGTATGCCAGATAGAGAGGTTAGCAACTGTAAGCAAAGGTGGTCCAAGATCGATGACCAAGTCAACGAGTTTGTTGGCTCGTTATGTGCTGCAACAAGAATGCAGTCAAGTGGGCAGAATGACAATGATGTAATGAAGCTTGCTAATGAAATCTATCACAATGATTACGGTGCCAAGTTCACACTTGAGCATTGTTGGAGGGAGCTCAAAAATGAACAGAAATGGCGGGTAAATTTTGGGACAGATAACAGCAAGTCAAAAAGAAGGAAGGGTGAAGATGGTTCTCAAGCTTCTTCTGTCCAGTCATCAAGCCTTGGAGATGAAGAAGAGGCTCGTCCTGAAGGTGTGAAGAAGGCAAAGGCGAGGTTGAAGGCTCAAAGGAGTGCCAAAGAGATGGAAGCAACCAGCAGAAAGCCTGTGGAGAAGTTCCAAGAGATGTTTGAGATAAGGAAGCATTACTTTGAAATGAAGGAGAAGCTTACTAAGCAACATAAGTTGGAGACTCTCCTTAGAAAAAAAGAGCCTCTTAGTGAGATTGAACTGGCTTTAAAGAACAAACTAATAAAAGATATGTTGTCATAAGAATCTATGATTTCTATAGAGTCAGTCTGCTTCTGCTTATGTATTTGTTTATGGAGTCAGTTTGTTTATGTTTTTCAGGTCAGTTTGTTGCTGTTTGTTGAGTCAGTTTGCTTGTCTATGTCTTATGTTTTAAAAGTCGGATGAATGATGTATTTTCACTATCTATGAACTTGTTTTAGTAATGGTTTAAAACG | |||||||||
gi|154181457|gb|EV550797.1|EV550797 RR3AZ65TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): AGGGAAGCCTTTTAATATCGATTCCCGCGAACTCATTTCACCAATCAATCTTCCTCCAGAACCCTAAGACCCAACCACAACCCCCTTCGAGAAAGATGTTGGAGCTTCGTTTAGTCCAAGGCTCTCTGCTGAAGAAGGTTCTAGAATCAGTCAAGGATCTGGTGAACGATGCCAACTTCGACTGCTCCAGCACCGGATTCTCCCTCCAGGCCATGGACTCCAGCCACGTGGCGCTGGTGTCTCTTCTCCTGAGATCCGAAGGTTTCGAGCACTACAGGTGCGACAGGAACCTCTCCATGGGGATGAATCTCGGCAACATGTCCAAGATGCTCAAATGTGCCGGAAATGATGACATCATTACCATCAAAGCCGACGACGGAAGCGACACCGTCACCTTCATGTTCGAGAGCCCTACACAAGACAAGATTGCAGATTTTGAGATGAAGCTGATGGATATCGACAGTGAACATTTAGGAATCCCTGACGCTGAGTACCCCTCTATTGTGAGGATGCCTTCTGGTGAATTTTCCAGGATATGCAAAGATCTCAGTAGCATTGGTGACACAGTTGTCATCTCTGTGACGAAAGAAGGTGTGAAGTTTTCAACAGCTGGTGATATCGGGACAGCTAACATTGTACTCAGGCAGAACACAACTGTCGGCAAACCTGAAGACGCAATTGTGATAGAAATGAACGAGCCTGTGTCGCTTTCATTCGCTTTGAGGTACATGAACTCCTTCACAAAGGCGACTCCTTTGTCTGAAACCGTGACAATCAGTTTGTCCTCGGAATTACCAGTCGTGGTGGAGTATAAAGTGGCTGAGATGGGTTACATTCGGTACTATTTGGCTCC | |||||||||
gi|167506297|gb|FD990198.1|FD990198 RR4H852TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTTTTCTCCTTTTCTATTTTACTGAGAAACCACTTCACTCTCTCCTTCTCTTTTCTCCACCAGAAAGTAGGAATGGATTCTTCAAATCCATTTACTCAGTCTTCGGGCTTTCTGGATCTGTCAAGTAGCCAACAGTGTGATCCTGTCTCACAAAGCATAGCTCTTGGATCTTCAGAAGTTCCTCTTTTTAGTTCCCAGGGGACTAATGCTCCAACTCAAGCTGAAGAGACAACTGAAGACATAAGAGGCGGAAGGGATTGGTCACAGAAGGAAGATGTGGTGCTCATACGTGCTTGGCTTAACACAAGCAAAGATCCGATCATAGGGTATGATCGAAAGCCTGGCTCCTTTTGGAAAAGAGTTGGAGCTTACTTCAATGCAAGTCCTCATCTTGTCGGTATGCCAGATAGAGAGGTTAGCAACTGTAAGCAAAGGTGGTCCAAGATCGATGACCAAGTCAACGAGTTTGTTGGCTCGTTATGTGCTGCAACAAGAATGCAGTCAAGTGGGCAGAATGACAATGATGTAATGAAGCTTGCTAATGAAATCTATCACAATGATTACGGTGCCAAGTTCACACTTGAGCATTGTTGGAGGGAGCTCAAAAATGAACAGAAATGGCGGGTAAATTTTGGGACAGATAACAGCAAGT | |||||||||
gi|167502539|gb|FD985882.1|FD985882 RR4H852JQB RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GTGGAGCTTACTTCAATGCAAGTCCTCATCTGTCGGTATGCCAGATAGAGAGGTTAGCAACTGTAAGCAAAGGTGGTCCAAGATCGATGACCAAGTCAACGAGTTTGTTGGCTCGTTATGTGCTGCAACAAGAATGCAGTCAAGTGGGCAGAATGACAATGATGTAATGAAGCTTGCTAATGAAATCTATCACAATGATTACGGTGCCAAGTTCACACTTGAGCATTGTTGGAGGGAGCTCAAAAATGAACAGAAATGGCGGGTAAATTTTGGGACAGATAACAGCAAGTCAAAAAGAAGGAAGGGTGAAGATGGTTCTCAATCTTCTTCTGTCCAGTCATCAAGCCTTGGAGATGAAGAAGAGGCTCGTCCTGAAGGTGTGAAGAAGGCAAAGGCAAGGTTGAAGGCTCAAAGGAGTGCCAAAGAGATGGAAGCAACCAGCAGAAAGCCTGTGGAGAAGTTCCAAGAGATGTTTGAGATAAGGAAGCATTACTTTGAAATGAAGGAGAAGCTTACTAAGCAACATAAGTTGGAGACTCTCCTTAGAAAAAAAGAGCCTCTTAGTGAGATTGAACTGGCTTTAAAGAACAAACTAATAAAAGATATGTTGTCATAAGAATCTATGATGTCTATAGAGTCAGTCTGCTTCTGCTTATGTATTTGTTTATGGAGTCAGTTTGTTTATGTTTTTCAGGTCAGTTTGTTGTTGTTTGTTGAGTCAGTTTGCTTGTCTATGTCTTATGTTTTAAAAGTCGGATGAATGATGTGTTTTCACTACCAAAAAAAAAAAAAAAAAAA | |||||||||
gi|161517437|gb|EY897324.1|EY897324 RR1D746TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGACCAAACAAAAGTACATGGACGCGTCAAAGAAGGAAGAGATCAAGAAAGGGCCATGGAAAGCGGAAGAAGACCAAGTGCTCATCAACCATGTCAACAGATACGGTCCTTGTGACTGGAGTTCCATTCGATCCAAAGGTCTTCTTCAACGCACCGGCATATCATGCCGTCTCCGTTGGGTCAACAAACTCCGTCCCAATCTCAAAAATAGGTGCAAGTTCTCGGCGGATGAAGAGAGAACGGTGATCGAACTGCAGGCGGAGTTTGGTAGCAAATGGGCGAGAATCGCTACGTATTTACCGGGAAGAACTGACAACGATGTGAAGAATTTTTGGAGTAGCAGAATAAAGAGACTCGCTAGGATTCTTCGTAACTCTTCTGATGCATCGAGTTCTAGCAATCCAAAACCTTCTTCTCATCGAAACAAAGGCAAAAACGTTAAACCAATCCAATCCTTATATGCCACTCAGTTTCAGAGATTTGGTTTGGTCGAGGAAGAGATTACAGCTCCTTCTTCATCTTCCAAGATTCTTCCTTACTCATCATCAGACCAAGATGATCATGAAGCCTTGAGGTTGCCTGAATTGGGTATTAAGTTAGAACATAAGCCATTGGATCTTGTTCTTGCAGAGACGGCGGCGACTCCACTAATGTCTGAGTTTCATATTGCTAATCAGCAAGCGGTTAACTCTAACTCTTTCTCTTCAGAAAGCATAGAGCTTTTGGCTAGACTCGACAACCCTTATTACTACGATATCCTCGGACAGCTGATCTTCCGAGCCGTGTTCG | |||||||||
gi|166126224|gb|FD559529.1|FD559529 RR4FK49TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGGACTTACCAAACAAAAACATGGAAGCAGCGAAGAAGGAAGAGATCAAGAAAGGGCCATGGAAATCGGAAGAAGACCAAGTGCTCATCAACCATGTCAACAGATACGGTCCTCGTGACTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAACGCACCGGCAAATCATGCCGTCTCCGTTGGGTCAACAAACTCCGTCCCAATCTCAAAAATAGGTGCAAGTTCTCGGCGGATGAAGAGAGAACGGTGATCGAACTGCAGGCGGAGTTTGGTAACAAATGGGCGAGAATCGCTACGTATTTACCGGGAAGAACTGACAATGATGTGAAGAATTTTTGGAGTAGTAGAATAAAGAGACTCGCTAGAATTCTTCATAACTCTTCTGATGCATCCAGTTCTAGCAATCCAAAACCTTCTCATCGAAGCAAAGGCAAAAACGTTAAACCAATCCAATCCTTATATGCCACTCAGTTTCAGAGATTTGGTTTGGTCGAGGAAGGGATTACAGCTCCTTGTTCATCTTCCAAGATTCTTCCTTACTCATCATCAGACCAAAATGATCATGAAGCCTTGAGGTTGCCTGAATTGGGTATTAAGTTAGAACATAAGCCATTGGATCTTGTTCTTGCAGAGACGGCGGCGACTCCACTAATGTCTGAGTTTCATAATGCTAATCAGCAAGCGGTTAACTCTAACTCTTTCTCTTCAGAAAGCATAGAGCT | |||||||||
gi|158647386|gb|EX757277.1|EX757277 RR2CM38TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGAATCAATCTTCCTCCAGAAAGCTCTAGAACCCTAAAACCCCTTCGAGAAAGATGTTGGAGCTTCGTTTAGTCCAAGGCTCTCTGCTGAAGAAGGTTCTAGAATCAGTCAAGGATCTGGTGAATGATGCCAACTTCGACTGCTCCAGCACCGGCTTCTCCCTCCAGGCCATGGACTCGAGCCACGTGGCGCTGGTGTCTCTTCTCCTGAGATCCGAAGGTTTCGAACACTACAGGTGCGACAGGAACCTCTCCATGGGGATGAATCTCGGAAACATGTCTAAGATGCTCAAATGCGCCGGAAATGATGACATCATCACCATCAAAGCCGACGACGGAAGCGACACCGTCACCTTCATGTTCGAGAGCCCTACACAAGACAAGATTGCAGATTTTGAGATGAAGCTGATGGATATCGACAGTGAGCATTTAGGAATCCCTGACGCTGAGTACCACTCTATTGTGAGGATGCCTTCTGGTGAATTTTCCAGGATTTGCAAAGATCTCAGTAGCATTGGTGACACAGTTGTCATCTCTGTGACGAAAGAAGGTGTGAAGTTTTCAACAGCTGGTGATATCGGGACAGCTAACATTGTACTCAGGCAGAACACAACTGTCGACAAACCTGAAGACGCAATTGTGATAGAAATGAACGAGCCTGTGTCGCTTTCATTCGCTTTGAGTACATGAACTCCTTCACAAAGCGACTCCTTTGTCTGAAACTTGACAATCAGTTTGTCCTCGGAATACCAGTCGTGGTG | |||||||||
gi|158656632|gb|EX766523.1|EX766523 RR3BP16JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TCTTTACGGAAACCAACATCCATCTGATGTGTGATCCAGATAATAGCCATACCTTTACGGATGGCATGCTTCTTACTTCTAAGCCCTTGTTTGGGGCAGTGAAGCTGGAGCTCCCTTCATTCCAATATTCAGAAACTAGTGAATTTGATCAGTGGAAGACGACGACACCGTCATCTCCACACTCGGAAGATCCCCTTGACTCTGTTGATGCCTATATTCAATCTCCCCCACCATTGGAGATAGAGGAGTCAAGCGACACTGGCCTACTAGATATGTTACTTCACGAGGCCAAGATCAAAACTAGTGCGAAGCGTAGTTTGGCTCTCCCCGAGATTCCAATTCCCACGCAACTTAGTGCAGGTGATGATAATTCACCAGGAAACGTTGTTGTAAAGACAGAAGAGTTGGATCAGGTGTGGGAACCAAAGAGAGTCGTGGATGTAACACGCCCTGATGTTTTCCTTGCATCGAGCTGGCTAGACCAACAAGGCTGTTTCGGGATTGTTAGCGACTCAAGCAGCATGAGTGATGCACTTGCGCTTCTTCTCGGTGGTGGTGAACACATTGAAAACAGTTACGTGACTGTTGAGTCATCATCATCAGGTCAAGCACAACAAGGAGTTGGGTCTTGCACATGGACTAATATGCCTCCTGTTTGGTCCCTGTAACCCCATCAC | |||||||||
gi|161542220|gb|EY914133.1|EY914133 RR3DE89TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGGAGAAACTACTTCACTCTCTCCTTCTCTTTTCTCCACCAGAAAGTAGGAATGGATTCTTCAAATCCATTTACTCAGTCTTCAGGCTTTCTGGATCCGTTAAGTAGCCAACAGTGTGATCCTGTCTCACAAAGCATAGCTCTTGGATCTTCAGAAGTTCCTCTTTTTAGTTCCCAGGGACTAATGCTCCAACTCAAGCTGTAGAGACAACTGAAGACATAAGAGGCGGAAGGAATTGGTCACAGAAGGAAGATGTGGTGCTCATACGTGCTTGGCTTAACACAAGCAAGGATCCGATCATAGGGTATGATCGAAGGCCTGGCTCCTTTTGGAAAAGAGTTGGAGCTTACTTCAATGCAAGTCCTCATCTTGTCGGTATGCCAGATAGAGAGGTTGGCAACTGTAAGCAAAGGTGGTCCAAGATCGATGACCAAGTCAACGAGTTTGTTGGCTCGTTATGTGCTGCAACAAGAATGCAGTCAAGTGGGCAGAATGACAATGATGTAATGAAGCTTGCTAATGAAATCTATCACAATGATTACGGTGCCAAGTTCACACTTGAACATTGTTGGAGGGAGCTCAAAAATGAACAGAAATGGCGGCTAAATTTTGGGACAGAAGAGGCTCGTCCTGAAAGTGTGAAGAAAGC | |||||||||