| mature miRNA: TTTGGATTGAAGGGAGCTCTA species: Ricinus communis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117342553|gb|EG673801.1|EG673801 RCRD186TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRD186, m TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GAAGTTTATACTTGGGGTAGAGATGAAGGGGATGGAAGGCTGGGACTCGGCCCTGGGAGGGGCCCCAATGAAGGAGGGGGACTTAGTATCCCTTCCAAAGTAAAAGCATTGACAGTTCCAGTTGCTGCTGTTTTCTGTGGTGGCTTCTTCACAGCGGTGCTCACAGAGGAGGGGCAGATTTGGAATTGGGGAGCAAACTCGAACTATGAGCTTGGGAGAGGCAATAAGACTGGTGGTTGGCAACCAAAACCAATTCCTAATCTTGAAGGTGTTCGGGTCATTCAGATAGCAAGTGGTGGATATCACTCACTTGCATTAACTGATGAAGGGAAAGTTCTTTCATGGGGCTTTGGTGGGCATGGTCAGTTGGGCCACCCTTCAATTCAAAACCAAAAAATACCAATGGTAATTGATGCTTTGGCTGATCAACGTGTTGTTTATATTGCTTGCGGAGGTTCAACATCAGCAGCTATAACTGATGAGGGGAAGTTGTACATGTGGGGAAATGCCAAAGATTCTCAGCTGGGGGTTCCCGGTTTGCCAGAGGTACAACCATGTCCTGTGGAGGTCGTGTTTCTAATGGAGGATGATGGTTTGGGACCCCATAAAGTTCTGTCTGTTGCTGTTGGTGCATCTCATGCAATGTGCTTGGTTTTGAGAACAAGCTCTTAGAATTCATTTTGTGGTTTCAACTTTCTAGGATTACCAACATATTGTGGACGGGGTTGAATCTTTTGTAACAGAACTCTTAACACTGATGCATGGAAGCTTTAGATGAGCGGATTCAAGAATGAT | |||||||||
gi|117334054|gb|EG665844.1|EG665844 RCLE710TO Castor bean cDNA library from leaves, 1.7 kb Ricinus communis cDNA clone RCLE710, TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CATTGTTACAAAAACATGAAAATTTACCAAAAACCACTACCATGCATTACAATTCTGCTGCAACCTGCAAATACCAAAAGTTTGCTTATTTAGGCACAGCAGAGATTCTCTCCAGGATTTCTATGAATTTGCGGGGATTCTAGGTCAAGGTGGCTACAAAACTCTTCATCATCATTCTTCACCGGCATCCTGTTCAGATTCTCCCTCCTCCTCTTCATCATCCTCATTATCAATATCAACATCCACACCATATCTTCCATTCAAGTAATCAACAGCATCAGGAGTAAGCACTAACTTGTCAGAATTCAAAATATCAAACAAATTCAAAGTCCTAGGAGTCAACATTCTCAAAGTCCCAATGTTTCTACTAGATAAACCAACACTATCAGCAACATCCATCATCAAAAACATAACTTTCTCTTTTGGGTCCAATCCCCACCTTTTCATAGCTTCAATAAAATCTTTAGTCTTAGGTTTCTCAAACTTGTCACCGAACTCTTCAACACAAAGCATACTTTCAGTAGCACTGCACAATGCAGTAGAAATAGCCAATCTTTTCTCTTTTTTATTAATCTTGATAGACCAATCTCTTGGCTTAGGACCAAAAATTACACCACCACCAGGTCTAAGAGGTGTTCGAGAAGACCCACGTCGAGCACGACCAGTTTTCTTTTGTTGATAAGGTTTCTTGCCACCACCTCTAACTTCAGCTCTAGTAAGTGTGGAAGCAGTGCCACGGCGCTTGTTTTGTTGGTCAGTGATAATTGCACGGTGAACCACTGCACGTGCAGTGTCTGGTGGTGCTGTCTTCAGTCCAAATATGTTTCTCCGATTTTTCGCCAGTGAAAGAAAATTGGGAGAGTGGAAACTTGGCATG | |||||||||
gi|688482|gb|T14845.1|T14845 crs292 lambdaZAPST Ricinus communis cDNA clone pcrs292, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TGAGCTTTAGCTGGAGCTTTATTCAAGCCAAAACATTATAGCGAGTGTGCTTGCTCAAATATTTTGCAGGCATGCCATATTCACAATGGAATATGTAAATAGCCTCCATTATTTTTCTTCAGAATCTTTTGGATAGTTGCGTCATGATACACACACACACACACACACACCACTTCCATTTGTAATTGTTCATCCATCTTGGAACTTTGATATATTTATGTTCGTTATTTAGATATTTTTTATAATGCAGCTTTGAGAAGTCCACAAATAGTTTAGTAATGGNCTAATTTAATCTGAGTCCTCATCATGGTAAGGTAAATAAATGATGGAGGTTGGCATGGNTGTGTAATTGAAGNAATCATACCCAATTGTTTATGCAATTGGGACCAGTNAAAAAATTTCGGGATNCTTATTTGTNCCCCTTGATGGGNNCCGGTTGGCAAATTTACCACNTTACCTTTGGTTTACCCTAANAGGGGG | |||||||||
gi|117333269|gb|EG665059.1|EG665059 RCLGR82TP Castor bean cDNA library from leaves, 1.7 kb Ricinus communis cDNA clone RCLGR82, TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GTGGCTCCAGAGAACATATCTAATGATACAATTCATAGTCCACTAATAGCCTCCAGGAATGAAAGCAATAAAGGATGGTGCCATTCTGGCTGGGACATAAGTCCAAATAAGAAAAAGTGCTTAAAATATTTTGAGAAATCAAAGTCATGGGACGATTCAGAAGCTCTTTGTGCAAGCTATGGTGGACACTTGGCAGCATTGACATCATCTCAAGAACTAACCTTTGCCAAACAGCTGTGTGGCCAAATTGTGGATGGCTGTTGGGTTGGTGAACGAGTCATCAACTCCACTGTTGGTTCTAATTGGAAATGGTTTGATAATACATCATATTGGAATGAGTCAATATTGTCTGGAGCATCTTTCGATTCAAAGTGCACCAACTTGTCATGCCACAATAATGCTACAGCTGAATTTTGTACATTGGTGAATAACAGAACCACACATCTTGTGGATGAGAGATGCAACAAGTCTCATGTGTTTATATGCATGCTAGATGCTGAGAACAAATGTTACCACATGCATTGTCATAGGGAGTATCTTATTATCCTTGCAGTTGTCAGTGGGTTGATTCTCTGCACTGCATTAGCAGTGGTGATTTGGCTTCTTGCATATAGACGGAGCCGGAAGC | |||||||||
gi|688493|gb|T14856.1|T14856 crs303 lambdaZAPST Ricinus communis cDNA clone pcrs303, mRNA sequence TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TGAGCTTTAGCTGGAGCTTTATTCAAGCCAAAACATTATAGCGAGTGTGCTTGCTCAAATATTTTGCAGGCATGCCATATTCACAATGGAATATGTAAATAGCCTCCATTATTTTNCTTCAGAATCTTTTGGATAGTTGCGTCATGATACACACACACACACACACACACCACTTCCATTTGTAATTGTTCATCCATCTTGGAACTTTGATATATTTATGTTCGTTATTTAGATATTTTTTATAATGCAGCTTTGAGAAGTCCACAAATAGTTTAGTAATGGACTAATTTAATCTGAGTCCTCATCATGGTAAGNTAAATAAATGATGAAGTTGGCATGGATGTGTAATTGAAGTAATCATACCAAATTGGTTTATGCAATTGGNACCAGGTTAAAAATTTCGGAATGGTTATTTTGTNCCCCTGNATGTGNCCGGTTNGCAA | |||||||||
gi|117332831|gb|EG664621.1|EG664621 RCLE621TO Castor bean cDNA library from leaves, 1.7 kb Ricinus communis cDNA clone RCLE621, TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTTATAAGAAAAGAAGCCGCATATGGGTGACCTCTATCTTATATTTATTGAAAATTAATAGCTGCTCGAGACGTAGGCATATATGTAATACATTGTAGAGGGGAGAGAAATGGTTAGAGGATAAAAGATGGAGGGTGTCACATAGTTGATGATAATGTTCATACAGAGAGAGAGGGAGTAAAGGAGTACTCAAGCCCCCACAGCTCGAATTTTCCTGAAACGAAGTCGTAGTAGGCACCCTTCAATCCAAGAGTTTTGCTTGCCAATGCATCTCTAACAAATGGATATGTTAGCAAGTTTGCAAGGGACACATTCACTGCTTCCTTTTCACAGTATGTGCACTGGTCTGGGAAAGGCACACTGCCACGTTCTGCTATCACCTTGGACTTGGCAGGTAAACCAACAGCAACCCAGTCTTCTATGAAGTCAGTGGATTTGTTTCCATCATATGGGAAAGACATTAGCCCCTTAATTCCACCACAGCAACTGTGCCCAATGACCACAATGTACTCAACCTTCAGATGCAAAACTGCATATTCAACTGCAGCACCAACTCCTGCGTACTTGGTCTGATCATATGGTGGGACCATATTAGCAACATTACGGACCACAAAAGCCTCTCCTGGCTGAAAATCCAGTATGTGTGATGGGCAGACCCTGGAGTCTGAGCAAGCAAACACCATAAACTTGGGGCTTTGGCCTTTTGAAAGCTCACTGTACAATCCAGGATTCTTGTCGTATTTCTCTTTCTTGAAATGAATGAAGCCTTCTTTCATCCTTTCAACAGGGTTGAAAGGTTTGCTGTCAGATGATGCGGTCTGTAACTCAGCTGTTATCTGCTCTACTTTCGCAGTTGCCTCGGCTTTCAGCTCTCCTTTCTCACTGAGAGTTTCTTGAGAGCTTCAATTGCTCATCATA | |||||||||
gi|111141306|gb|EE254783.1|EE254783 RFAA331TV Castor bean cDNA library from flowers,800bp Ricinus communis cDNA clone RFAA331, m TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TCACACATATTATTTAAACCACTTCCACAATGCCTAGACCACATTTTTCAACTACTCAACTGCTATTCCTATATAAATACTATAATAATAATAATAATAACTAATATCAGTTTGTAGATGGAGTTGATGCATAATGCCTGTCTACCACCTCAATCAGCTTGTTTGCTATGGCACTCGCATAAACTGAAGAACCTTCAAATATCTTGGTGTTAAAGAGAAAGCTGTAGTAATCACCAATATGGCCACCAGCAACGTGATGGAGATCAAGCTGAAGTTCATCAAGGACTTTGGAGACAAACAGCAAGCAATTGATCTTCTTTCGTTGAACAAGTTTGATAGTAACTTCATCATCAATTATACGAACGTCCACCTCCGTATCCTTTGATTTCCTTTCAATCCAAGAGCTCCTTAATGATCCATTGTTGAAACTCTGATCAGGGTCGCCAAGAGGTTTGGTGATACAAGAACTGTCATGACCATTCCCTATAGAATCTTCTTCTGTCTTCTGTCTCTTGCTCCTTTCTCTAGCACATCTCTTTTTTTCTACTAGTAGTTTCAGCTCATTAACAGTTCTAAGAAGTTCCTTGATATAATCAATTGCATCTCCAACCACAGATGTTCTATCAGCCTTTGTAGGATTAGGAACCAAATTCTGCAAAGCTTTGTACTTATCATTAAGGTGTTGTCTCCTTTGGCGCTCAGTAGCAAAGGGTTTAG | |||||||||
gi|117336654|gb|EG668444.1|EG668444 RCRC691TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRC691, m TTTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CCAACACACAATGAGTCATTTCTACTAACCAATCTCATTTCACAGCTCAAATTTCCCATCTTTCTTCTGCTGGGTATGAGGAAAGAGCTGTGATGGATTTGAAATTGACCCATTTGCAGTTTTCTGTGCTTTTGATTGCTGTTGTGCTCTCTTTTGTGGCTCCAGAGAACATATCTAATGATACAATTCATAGTCCACTAATAGCCTCCAGGAATGAAAGCAATAAAGGATGGTGCCATTCTGGCTGGGACATAAGTCCAAATAAGAAAAAGTGCTTAAAATATTTTGAGAAATCAAAGTCATGGGACGATTCAGAAGCTCTTTGTGCAAGCTATGGTGGACACTTGGCAGCATTGACATCATCTCAAGAACTAACCTTTGCCAAACAGCTGTGTGGCCAAATTGTGGATGGCTGTTGGGTTGGTGAACGAGTCATCAACTCCACTGTTGGTTCTAATTGGAAATGGTTTGATAATACATCATATTGGAATGAGTCAATATTGTCTGGAGCATCTTTCGATTCAAAGTGCACCAACTTCGTCATGCCACAATAATGCTACAGCTGAATTTTTGTACATTTGGTGAATAACAGAACCACACATCTTGTGGATGAGAGATGCAACAAGTCTCATGTGTTTATATGCATGCTAGATGCTGAGAACAAATGTTACCACATGCATTGTCATAGGGAGTATCTTATATCCTTGCAGTTGTCAGTGGGTTGATTCTCTGCACTGCATTAGCAGTGGTGATTTGGC | |||||||||