| mature miRNA: TTTGGATTGAAGGGAGCTCTG species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21273932|gb|BQ466150.1|BQ466150 HT01L14T HT Hordeum vulgare subsp. vulgare cDNA clone HT01L14 5-PRIME, mRNA sequence TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): AACGAAATAAAGAATTACTGGAACACTCGAATAAAGAGATGTCAGCGAGCCGGTTTGCCAATATATCCTGCTAGTGTATGCAATCAATCTTCAAATGAAGATCAGCAGGGCTCCAGCGATTTCAACTGCGGCGAGAATCTTTCCAGTGACCTCCTGAATGGAAATGGTCTTTATCTGCCAGATTTTACCTGTGACAATTTCATTGCTAATTCAGAGGCTCTATCTTATGCACCACAGCTTTCAGCTGTTTCAATAAGCAGTTTGCTTGGCCAGAGCTTTGCATCCAAAAACTGCGGCTTCATGGATCAAGTAAACCAAGCAGGGATGCTAAAACAGTCTGACCCTTTACTCCCTGGATTGAGCGACACCATCAATGGCGCGCTCTCCTCGGTCGATCAATTCTCAAATGACTCTGAGAAGCTCAAGCAGGCTCTTGGTTTTGACTATCTCCACGAAGCCAACTCTAGCAGCAAGATTATTGCACCATTTGGGGGTGCGCTTACTGGCAGCCATGCCTTTTTAAATGGCACCTTCTCTACTTCTAGGACCATCAATGGTCCTTTGAAGATGGAGCTCCCTTCACTCCAAGATACCGAATCTGATCCGAATAGCTGGCTCAAGTATACCGTGGCTCCTGCGATGCAGCCTACGGAGTTGGTTGATCCGTACATG | |||||||||
gi|21196311|gb|AJ480356.1|AJ480356 AJ480356 S00011 Hordeum vulgare cDNA clone S0001100133A04F1, mRNA sequence TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): TAATGGTCCTTTGAAGATGGAGCTCCCTTCACTCCAAGATACCGAATCTGATCCGAATAGCTGGCTCAAGTATACCGTGGCTCCTGCGATGCAGCCTACGGAGTTGGTTGATCCGTACATGCAGTCCCCGACAGCAACTCCGTCAGTGAAATCGGAGTGTGCTTCGCCGAGGAACAGCGGCCTCTTGGAAGAGCTGCTTCATGAAGCTCAGGGACTAAGATCTGGGAAGAATCAGCAGCTCTCCGTGAGAAGTTCAAGTTCCTCTGTCAGCACGCCGTGTGATACCACGGTGGTTAGCCCGGAGTTTGATCTCTGTCAGGAATATTGGGAAGAACGTCTGAATGAATATGCCCCATTCAGTGGCAATTCTCTCACTGGATCCACCGCTCCTATGAGTGCTGCGTCGCCTGATGTTTTTCAGCTCTCCAAAATTTCTCCTGCACAAAGCCCTTCACTGGGATCTGGAGAGCAGGCAATGGA | |||||||||
gi|21196310|gb|AJ480355.1|AJ480355 AJ480355 S00011 Hordeum vulgare cDNA clone S0001100075C07F1, mRNA sequence TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): CTTCTAGGACCATCAATGGTCCTTTGAAGATGGAGCTCCCTTCACTCCAAGATACCGAATCTGATCCGAATAGCTGGCTCAAGTATACCGTGGCTCCTGCGATGCAGCCTACGGAGTTGGTTGATCCGTACATGCAGTCCCCGACAGCAACTCCGTCAGTGAAATCGGAGTGTGCTTCGCCGAGGACCAGCGGCCTCTTGGAAGAGCTGCTTCATGAAGCTCAGGGACTAAGATCTGGGAAGAATCAGCAGCTCTCCGTGAGAAGTTCAAGTTCCTCTGTCAGCACGCCGTGTGATACCACGGTGGTTAGCCCGGAGTTTGATCTCTGTCAGGAATATTGGGAAGAACGTCTGAATGAATATGCCCCATTCAGTGGCAATTCTCTCACTGGATCCACCGCTCCTATGAGTGCTGCGTCGCCTGATGTTTTTCAGCTCTCCAAAATTTCTCCTGCACAAAGCCCTTCACTGGGATCTGGAG | |||||||||
gi|161464727|gb|EX584727.1|EX584727 HDP01E19T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP01E19, mRNA sequence TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): GTTTTAAAACGTTGACTGCAAGCATAATTATGCACCTTACATTTCTGGACCAAGGGAGTATAGTCCACCAGTAATATTGAATGGTACAGTGGCAAAATCATGAATATGTCGCATTGATGCAAATAGCTTTAGGCCTTCCTGTGATGCATTCCAAGGCGTGAAGCTGCATCCTTAATATGCTTAAGGGATTCAACAAAGTCATCCAAAAGTTCATCGTAGTCAGGAAATCGTCCCTCATCCAGTGCTAGGTTTATCATGATGGTGTTGACATAGCTTTGATAATTCACGGTTAGGGCTTCTGGTGGTTCATAGCCGCTAGGGGCGATGAAGACGACTGGCTGCCCACAAAACTCCACCTGTTCGACCGGGCCAGTCATGTTGGCGAACGATATGGTGGTATGGGAGATCATACGATGGAAGATAGCTGCAGCTGCCTTCAGTCCAAACACTTTGAGGATCAATTCTGCGGCGACATGTGTGAATACCACCTCCAGTGAGCTCTTCTTCCTGTCCACAACCTTCTTCCCCTTGC | |||||||||
gi|161443058|gb|EX581633.1|EX581633 HDP21H18T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP21H18, mRNA sequence TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): GAATACCATTTTCCTGCTCAAGGTCCCATGTTCAAACATATAAAAGACACCTCCTTTCAATCCAAAATTTCTTTATATTCCTTTCAAGCAAGAGAGCTACTACCTTTAGAACTACTCAGTATCAGAAGGTACATTTCCAGCCGAGCCCGGTTGGTGGGGCACAAGAGGCTCCATCCCAGGTTTCAACTCCTTGTTGCAGAAGTCATCATACTCTGCCTTATCCCCTGCCTTCTTCTTCACCTCCAACACCAAAAGGCTTGGGGTAAGCTCGAATATC | |||||||||
gi|14528013|gb|AV835924.1|AV835924 AV835924 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): ATGCATTATTTTGAAGTAGCTCTAATTTTGTTAGAGCTCGGTTCGGTCCAAACATACACTATAAAATACGTACATACAAAGTGATATTCATTAATACTTGGAAATTTCTGAAACGATCCTAAAGGCCAAGATCAGGGATGTAGCAGTCATCTACTCTACTTTACCGCGAACCGAATGAGTTGTGCTGGCATCCCCGCCACTGACCACCGAAGAACCAACAGATACATCAGCTGCTGGCTGCATCATGTTTGTTGCTACCGGCATCTCCGCTGGGAGGCTCGGCAGCGGCACCTCCAAACGCAGCACGCTTACAGCCTGCCTGATGGACGGCCTCAGGCTGGGGTCGGGATGCCCGCACCAGAGCCCGACCACCATGACACGCTCCATCTCTTTCTCGTCGAACTTGCCATCCAGCCGGGTGTCGGCTGCCTCCAGGATGGCCCCTCTGCCGTATGACTCCCGTACCCACTGCAACAGATGGATAACTGCTCCGTCATCATCGTCTAGAGCCACTGCTGGTGTCCG | |||||||||
gi|51525362|gb|CV062223.1|CV062223 BNEL77f6 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL77f6 5' s TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): GGCAGAAGAGTCCTACTCTCTCCTCCCTGCTCGCCTAGGATGTTCGCCGGAACGCCTGGCTACCAGCATGACGTCATACAGGAGCCTGAAGAGCATGACCACCACGACCCCGTTGGTGACACACAGCGGGAGAACACCCTCAGGTCCACACCGCACGAAGACACTGGCACCACAAGGCCACCGTGACCATCCTGCTACAACTAGACTGCACTCAGGACGTCTGACATCCTGTACGATGCTAGTGCTCCCAAGATCATTGTGAACGACTTGCATGGAAACAATAAGCACTATGGGAACTGCCTGCGCAATGTTCTACAGATGGTGCTGACGCAGAATACTAAACCCGGGGGACTCGGACATCATGCCAACGTGAACGGCTTCAACGAAATCCTCACGGATCCCAACCCTCAACAAAGCCTTAAAACGGGAAAAGAAAAAACAGGCCCGCTCCTGTCTATTCTCCAAGGCCAAAAGGTTGGCCAAAAAAAGAAACTTTGTATGCACACAATAACACCGTGGGCTTATATTATTTGGGGCCAGGGCGCAAATACACCTCCACACGAGTGGCCGCAGTTTTACCACCCGGAACACGGAGTGGTATTCTCGGCGTTCGCTGTGCCAAATAAATCACCCATAAAGGGTGCGGACTAGTTAAAATATTCTCCCTGTGGGGGGGGCCCCCGTTCTATAAACCGAAATACCCCAAAGGTTGACACCCTCCCCCAAAAAAGTGGCCACAGAGCCATAAAATTATCCTCATAAAGAGCCCCTTTCAATCTAAAAGGCCCCCCCCCCACTTTGTAAAACCCGGGGAAATAAGGAAAACCCCCGCCATAAAAACCCCCTTATAATAATGGCAAAAAATTCCAGCTTTGCAGGGTGGATTTACTAC | |||||||||
gi|24283681|gb|CA006699.1|CA006699 HU05H10r HU Hordeum vulgare subsp. vulgare cDNA clone HU05H10 5-PRIME, mRNA sequence TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): CGGCACGAGGCTCAGTTGCCAGGGCGTACTGATAACGAAATAAAGAATTACTGGAACACTCGAATAAAGAGATGTCAGCGAGCCGGTTTGCCAATATATCCTGCTAGTGTATGCAATCAATCTTCAAATGAAGATCAGCAGGGCTCCAGCGATTTCAACTGCGGCGAGAATCTTTCCAGTGACCTCCTGAATGGAAATGGTCTTTATCTGCCAGATTTTACCTGTGACAATTTCATTGCTAATTCAGAGGCTCTATCTTATGCACCACAGCTTTCAGCTGTTTCAATAAGCAGTTTGCTTGGCCAGAGCTTTGCATCCAAAAACTGCGGCTTCATGGATCAAGTAAACCAAGCAGGGATGCTAAAACAGTCTGACCCTTTACTCCCTGGATTGAGCGACACCATCAATGGCGCGCTCTCCTCGGTCGATCAATTCTCAAATGACTCTGAGAAGCTCAAGCAGGCTCTTGGTTTTGACTATCTCCACGAAGCCAACTCTAGCAGCAAGATTATTGCACCATTTGGGGGTGCGCTTACTGGCAGCCATGCCTTTTTAAATGGCACCTTCTCTACTTCTAGGACCATCAATGGTCCTTTGAAGATGGAGCTCCCTTCACTCCAAGATACCGAATCTGATCCGAATAGCT | |||||||||
gi|217051342|gb|GH218311.1|GH218311 HVSMEg0010N15r2 Hordeum vulgare pre-anthesis spike (white to yellow anther) cDNA library HVS TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGACAGTAGTAATAATTGAAGAATGATCTATAGCTACACTATCAGACCCAAAACGATCCAAATAAAAAACAACATATTCCTGAACATGTTTGAGACGGAGCACCTAGTTTAATTTACTCTTTCTGGGATCTCTTCGATCCAAAACATGGGGTGTATGGAAAAAATTCGATCTCCCGAGCTTCATTAACAAGGCCCGAGTCGAAATATTTGTGACAACTTGGGTATATGCTTCCTAAACTTTCAACCTTGAAGCTATTCAAATGATAGGCAAACGCCATTGCTTTTAATTTGAAGGGCTCCGACCTACTCAAAAAGAAAATCTCTTTGTACGGGTGGAATCCTAGTATCTCGATCTCAAAATATGGATGACGGTGGTCTTCAACCATGCCTGAGTTGTCATGAATATTGTCGTCGTCGGAGTTCCATTCAAATTGCTCTTGAATTACT | |||||||||