| mature miRNA: TTTGGATTGAAGGGAGCTCTG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|37708329|gb|CF759104.1|CF759104 DSAF1_41_B03.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_41_B03 TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): CTCAGTTGCCAGGGCGTACTGACAATGAAATTAAAAATTACTGGAACACTCGAATAAAGAGATGTCAACGAGCTAGCCTTCCTATCTATCCTGCAAGTGTATGCAATCAATCTTCAAATGAAGATCAGCAAGTGTCTGGTGATTATAATGGTGGCGAGAACATATCCAATGATCTTCTATCCGGGAACAGCCTTTATCTACCAGATTTTACCAGTGACAATTTCATTGCTAATCCAGAGGCTTTATCATATGCACCACAGCTGTCAGCTGTTTCAATAAGCAATTTACTCGGCCAAAGCTTTGCATCAAAAAACTGTAGCTTCATGGATCAGGTAGACCAAGCAGGGATGCTGAAACAATCTAGCTGTGTGCTTCCTGCATTGAGCGATGCCATTGACGGTGTGCTTTCTTCAGTTGATCAATTTTCAAATGACTCTGAGAAGCTCAAGCAAGCTTTAGGTTTTGATTATCTTAATGAAGCCAATGCTAGCAGCAAGAGTATTGCACCTTTCGGGGTTGCACTTACTGGCAGCCATGCCTTTCTAAATGGCAACTTCTCTGCTTCTAGGCCCACAAATGGTCCTTTGAAGATGGAGCTCCCTTCACTCCAAGATACTGAATCTGATCCAAATAGCTGGCTCAAGT | |||||||||
gi|34509415|gb|CF480546.1|CF480546 POL1_66_A04.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_66_A04_A002 5', mRNA sequence TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): CCTACTGGAGCCACAGGCCGGTCCTCGATCGATTTGGTGGCCTGCAACAACCGTGCTCCGCGCCTGCGGCCATGGGCTCGGCCACCTCCTCCCGACGCACCCTCCTCCTCCACCGCCGCCGCTGTCGCTCAGCGCCCTGCCGAGGCCCGGCGCGGACGGCGGCGGCGTGCACTGCGGCTACCCGCCGGTGCTCTGGGACCCGTCGTCCGCGGACCCCATGAAGAATCTGTACAAGAGGAGCCTGTGCTCGCAGCCTTCACTTCCATCGGTGAGCACGGGCTTGTCGCTGACGGCGTCGTCGAGCCACCCAACGGAGCCCCCTTCAAACCAAATGTACAGCAGCAGCAGCAGCAGCGTTTGCAGGAGCAGCGCGGCGGCGCCGGCGCCGGCCGACGACGAGAGGGAGGCGGCCGGCGTGGATCGATCCTGGCCCTTCATGTTCGAGGGCCTCAACACGACTGCCTTCCGGACGACGATGGGCAAAGCGCCTTTCGCCCCCAGGACGACGAGAGAGGCCGCCGCCGGCTTGCCTGATGTCTGTCCTGACCTGAGCAGATACGAGTTCAGAGCCTCAAACTATCTCAGCTCGAATGCGAGTTATTCAAACTGGCCATCNGGAGTTTGGGCACTGCAAGAGCAGCAAGGACAGCGAGGCTGCCTACCTTACCTTGAACGCACAGCCCACGCCACGCATGAAGTCGCAGCAGCCTCCTGCGCTCCCCCCGATCCACCTCCCGGA | |||||||||
gi|37706436|gb|CF757211.1|CF757211 DSAF1_15_B03.g1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_15_B03 TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): AAAGCAAAACACAATGTTACTCAATCATCCACGGATTACAGATGGACTTAGCAGAGCCCTTATTTGCCACCATTCCTCATGTCTTATTGCAGAAATCCATCTATTGCTACTCAATGTTACTCAGTCTCTGGAACTATTTGAAACCTTTATCCAAGACTCAAGTGTATTAATGGCTTTCCCGGACCTCTGTGTTTCCTGTGCTAGTGCAACACCATCATGTAAATTCTTCACTTTACCACTGACAAGTAGGGATGCGGCAGCATTTAAAACAAGGGCATCTGCAATGGACCCCCTTTGACCAGCAAGAACATCCTGAAGAACTTTTGCATTAAATGCTGGATCACCTCCTTTCAGATCTTCCAATGTGCATCGAGGAATTCCAAAATCCAATGGATCGAAGAGCATTTTTTCAATCTTCCCTGGAGTAACATCAAGGATATATCCAGGACCAAGTGGGCTTATTTCATCCAAACCCTTTGAATGGACGACCAGTGCTCTCTTCATTCCAAATTTCTGAGCAGCCTTAGCCATCTTGGTAACTATGTTTTCATGGTAAACACCAATAACAGCATGAGGCACCCTTGCTGGATTCAATAGAGGACCAAGGATATTGAAAACTGTCTTTATTTTTAGCTTCTTCCTCACAGGTCTGACAATTTTCATTGCA | |||||||||
gi|45974911|gb|CN139572.1|CN139572 OX1_22_G12.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_22_G1 TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): TTTTTTTCAAATGTCAGACGAAGTCAAGCATTAGTTGTTGATCATGTTTCCGGTATGTGTAAAGCTGGATTTGCTGGTGATGACCTTCCAAGAGCTGTCTTCCCATCTATTGTTGGTCGCCCAAGACACACTGGTGTCATGGTCGGTATGGGACAAAAAGATTCTTATGTCGGTGATGAAGCTCAATCCAAAAGAGGTATCTTAACTCTTAAATACCCAATTGAACACGGTATTGTCACCAACTGGGATGATATGGAAAAAATCTGGCATCATACCTTTTACAATGAACTCCGTGTTGCACCAGAAGAACACCCAGTTCTCCTCACCGAAGCTCCATTGAATCCAAAAGCCAACAGAGAAAAAATGACTCAAATCATGTTCGAAACCTTCAACACCCCAGCCATGTACGTTGCCATCCAAGCTGTCTTATCCCTCTATGCTTCTGGTCGTACCACTGGTATTGTATTAGATTCTGGAGATGGAGTTTCCCACACTGTCCCAATCTACGAAGGTTATGCACTTCCACATGCTATCCTCCGTCTCGATCTTGCTGGTCGTGATTTGACAGATTACCTCATGAAAATCTTGACAGAAAGAGGTTACTCATTCACCACCACTGCTGAACGTGAAATCGTCAGAGATATCAAAGAAAAACTCGCATACGTTGCTCTTGACTTCGAACAAGAAATGCAAACTGCTGCTTCCTCCTCTGCTTTGGAAAAATCATACGAATTACCTGACGGACAAGTAATCACCATTGGTAATGAAAGATTCAGATGCCCAGAAGCTCTCTTTCAACCATCTTTCCTTGGAATGGAATCTGCT | |||||||||
gi|45963007|gb|CN132720.1|CN132720 OX1_7_G01.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_7_G01_ TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): GGCCTCTGGTTTTGTGACAAGAGAGCAATTGTATTTCAGCATGGCCAGGAACATAACATCAGAAATTGAAACTTTTGATCATTCACGTTTAACCAGTTTTGAAGATTCCTACATACGGCCTATAGTAATTGATGCTGGATCCAGTACATGCAAAGCTGGATTTGCTGGTGAAAACGCCCCCAGAGTTGTCATACCATCAACTGTTGAGTGCCCAATTCAACGCGGTAATGATAGTGCCAACTGGGATGATGTGGAAAGACTTTTGAACCAAGTATTTTCCGAACTCTCTGTTGCACCAGAAGAATATCAAGTCCTTCTCACCGAAGCTCCATTGAATCCAAAAGCCAACAGAGAAAAAATGACTCAAATTCTGTTCGAAACGTTCAGGCCAGCAGGCGCGTACTTTGCCGTGCAAGCTGCCTTATCCCTCTATGCAACTGGTCGTACCACTGGTATTGTCTTGGACTCTGGAGAAAGAGTTTCCCACGTCGTTCCAGTCTACGAAGGTTATATTCTTCCTCATGCTGTCGTACGTCTCGATTTAGCTGGTCGTGATTTGACAGATTACCTCTTGAAAATCTTGAGTGAACGTGGATACTCATTCGCCAGCACTGCTGAACGTGAAGCCGTCAAAGATATTAAAGAAAAGCTCGCTTATGTTGCTCTTAACTTCGATGAAGAAATTCAATCTGTCGAAGAGAAAAGCTACGAATTACCTGACGGACAAGTGATCA | |||||||||