| mature miRNA: TTTGGATTGGAGGGAGCTCTA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|72271615|gb|DT048247.1|DT048247 COT_CY_C05 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' si TTTGGATTGGAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTTAAAAAAATCATGAGAGAAGGAAGTAGGCAGCCACCAACATAAAATCCCATACAAAAAGAAACAGTAAAACTCCCTCCAATACAAATGAAAAATATAAAGCTCCCCTCAAAAAAAATCTCCCAAAGAATACAAATATATATAATAATGTAGCTCAAATATGCATTGTAAAAAGCCCCATCAAAGAGACTTAAGCCAGTAACAATATATAATGGAAATTAAAACACTGAAAACAAAAACCATAGCTAAGACACAAATGGTGAAGAAAAGACTTCATGGTTTAAAGCATTAAAGTGAGGATACCCCATCCAATCACCAAGCTCCACACCATCTTTCTTATGGACCATGTTTTCTCTACTCCACTCGTATCGGTTCCAGCAGGGCCTGGTGAAGAAGCGCCGAGGCTGGGAGTAGGGGCCTCAGTTGATGGAGACGGTGGGCTGGAGGCCGAAGGTGATAGCGCTGGAGACTTAGCTTTGGTCTTGCTAGGGGCCGGAGCTGGAACCGTGGCAGGAGGAGAAGCCCAAAGGAGCTGGTGGTGGGGTAGCTG | |||||||||
gi|164307629|gb|ES839448.1|ES839448 UFL_054_36 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTTGGATTGGAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CCAAGATACAACTCTTGGTTCTCTTTTGTCTGCACTGATGCAACATTGTGATCCCCCTCAGAGGCGGTTTCCTTTGGAGAAAGGTGTTCCCCCACCATGGTGGCCTACTGGCAACGAGGAATGGTGGCCACAACTGGGATTGCCCAAAGATCAAGGTCCTCCTCCTTATAAGAAACCTCATGACTTGAAGAAGGCTTGGAAAGTGGGTGTTCTTACGGCAGTAATCAAGCATATGTCTCCTGATATTGCCAAGATTCGCAAGCTTGTAAGGCAGTCTAAGTGCTTGCAGGACAAGATGACAGCAAAGGAGAGTGCAACTTGGCTTGCTATCATTAACCAGGAGGAGGCCTTAGCACGAGAGCTTTACCCTGATTCCTGCCCACCTTTGTCCTCAGGTGGAGGAAGTGGGTCTTTTGTTATAAATGACTGCAATGAGTATGATGTTGAAGGGGCTGAAGATGAGCCAAACTTTGATGTACAAGAGCTCAAACCCGGGCATCTCAATACATCTAATTTCAGCATGGATACAATGAGGGCTGTCCAACAACAATCGTATCCTATTAAGGGAGTTGTCAATAATTTGGATTTCATGCGAAAGAGGAAGCCATCCGATGATTTAAACATGATGGAACACAAGATCTACACTTGTGAGTTCCTCCAGTGCCCTTATAGTGAACTTCGCCTGGGTTTTCATGACAGGACTGCCAGGGAAAATCATCAATTAACTTGTCCTTTCAGAAACTCTTCTGCGCAGTTTGGCGGTTCAAATTTTAACGTGAATGAAGTGAAACCAGTCATTTTCCCTCAACCTTTTGCACCATCCCAGCCAGCTGCACCATCTATTACATCTGCTCCAACACCCTATGAACTATCAGGACTCGGAGTTCCAGAAGATGGGCAAAAAATGATCAGTGGACTCATGGCAATATATGATAACCAACTTTAAAGGCAACAAAAAACTTAATTCCCGGGTAACAATCCAGGTACCTGAAGGGTCAAAAATCTCCCTCCAGTCCAAA | |||||||||
gi|109862907|gb|DW491884.1|DW491884 GH_RMIRS_088_D10_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TTTGGATTGGAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CTCAAGCTAGTGCTGTTAACCAAGCAAGTGGTGATAGTTGTGTTTTCACATTTGGTTCGGATTCTTCAGTATTCAGTCTTCCACGTTTGCCTCCGTCGACTCTCTACCGTCCTGGCTTTCCAGCATCCTTCTATTCATCACCAACATATCGCCCATCGGTTGTTCCAGTGGCTACCCTATCGTCAGCTTCCATCAACCAATGCGCTCCAAATACTGAAAGCTCAAGTCCAACTCCAACTTGGCCATTTCTGGGAAAACATTCAAGGGACGAAAAGGGAAAGCCCTCAGCAGACAGTAATATATCAGAAAGAAGAGCTTCTTCCAATTCAAAAGCTTTGAGGATTGATGATGATACTGAGGAGACTGCAAAAAGCTCTATGCTGGCGACACTTCGGATTAAAACCAAGAACACCAATTCAGGAGGTATCTTCGATGGCTTCCAATCCAAAACCAGTGATGATAGAAATTACAGACTAACAACATTCTCAATGCTGCGGGCTAACCCTGCTGCCTTGTCTCGATCGCTCCACTTCCACGAAAACACATGAAAGAGAAATGACAATGTATAGCATTTCATTACTCTATGCTATCTCAGCCATTGATATATTGAACCCAAATCATGCAAAACACTTTGCAGTTGACTCTTCCTTTTTTTCTACTTTCACCAGAAGTGTTATTACGGTAGGATTGTCTCGTCCTCTGCCTGATG | |||||||||
gi|164300033|gb|ES813085.1|ES813085 UFL_252_05 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTTGGATTGGAGGG-AGCTCTA EST sequence (targeted fragment marked with yellow): GGCACGAGGATACGCAAATATTGTTCTCCTCAGCTTTTGAAATATTCTTCTTCTTATCTAGATCTACAATATTGCTTCAAGAAAGAAAATTCTTTGTTGTTATTACTAGTGATTTAAAAAGAAAAAAAGTGGTTGATTCCTTTTCAAGTAATACGATTTTATAGCCGCTTGATTCTTGCCCAGAATCGAAGCGTTTCATCACCAAAAGTGATAGATATTGACGAAAATTTTAAGTTTATTGAAGAAATTGAAACAAACAAAAAAAAACTGAATCGTAGTATGTTTGTTTGGTGATGGGGTCAGGCAAAGGCGCGACTTCTTCTGCCCAACAAATGGAATCGTCTGTCCAAGATCTTCGTGAGAGATATAGGCTAGAATTGGAAAATTTAACATTGACTACACAGCCAGTCAAGACATTAAGGTTTTTCCTTCTGGCTATCCTTCAATATATCAAGCGATCAGCATCATATCTTTTGGCAAAGGGTGGTTGGCTTATGCTTTCAAGCACTCTAATAGCAGTTCTTGGAATTTTGCTTGTGACTATTGAGGGCCCTCATGAAAAGCATGTTGAGGAAGTTTCTCAGTATGTTCGATTTGGATTATGGTGGATTGCACTTGGTGTTGCATCTTCAATTGGTCTTGGATCTGGTCTGCACACTTTTGTCCTTTATTTGGGTCCTCATATTGCCTTGTTTACAATAAAAGCAATGCAATGTGGACGAATAGACCTGAAAAGTGCTTCCTATTATACAATACAGTTGAAGAAAGTTCTTTCATGGATGGATAAACCCCGGCGAAAGGTTGGGCCCCCGTTATTTTCATCATCCCATGGGGCAAGGGGTTCCTATTAGCAGTATTTTTGCCCCAGGTGCAAATTGGAGGCTTTTTTATGGGGTCCTGGGGATTGGCCGTGGAGAGCTTCCTTCCTTATTTTTTCCCAGGGGCGGTTGGTGTATCAGGAAAAAAATTTAAACCTTGAAGAATTGGATTTTTCCCCCAGGCAGGAAATGGGTTCTTAACTACTTCCCCGAAACGAAATCGAGACCTGGGGTGGTTATTCTCCTTTCAACAAAGGAAATTTCTTCCCATTTTTATGGCTGCCCTCCAATCCAAAACTCCCTTTTTTTGAATCTTGTCTGGAGTCTATGGGGGGGGAAAAATTGGGGG | |||||||||
gi|109838906|gb|DW237467.1|DW237467 GH_RTMF_12R_F12_InvR_02Aug04_086_R Root (free) - 3 weeks after planting Gossypium hirsutum c TTTGGATTGGAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GATGAATAATATCAATAAATTAATATTCTATTAATGGAAGAAAAGATTATTTACAAAACCGGTGTAAGATTAATAAAAAATTATACATACATGATTACAATTGCCGACTGCTCTTCTTGGTAAAGAATGAATCAATTGGCAGATGCGCTGATTTATGCTTCTTACGTCTATTTTGGCTCCCACTATAATCCTTTGGGACAATCCTTAGCCTTGGAATCAAAGAGCTCGAGCCTGTACCAGATTCCTCCTTCTGAAGCCTCTCGGCAAGATGGAAGTCAGAGTGCTCTTGTCTTTCTTCAACAAAACTTGAAGGTAATTCAGCCCCACACAATGAACACTTGTAGCCATCCACCCAAAATAACATTTCCATCTGATTTAATGAAAAAAATTCCTCATTTCCGGAGGTACTAGGTTCTTTGTTTAATCTGTCCGGATTGCTGTCCTCCGGCTCCCTCTGGATGGAAGAATCATCTTCTGACACTCGTGATAAGTCTCTTTTAGGAGATTTTGTGGTCCGCTCTTTCACATCGGCAGTATTCACCATGGCCGCAGTTTTGTTGCTAGAAAGTTCATCAATTTTCTCCATTTCACAAGCATTTATGCTGGAAATGCAATTTTTGTCATCTATATCTGATAAATGCTTCCTCTCAAATGGATCTCCGAACTCATGGTGACATGTCTCATTGTTGTCAAGAGAAATGGCAGTTTCCTTTTCACTTATGAAGTGGAGATCACTCCAATCTGAACCTAA | |||||||||
gi|78352628|gb|DT572902.1|DT572902 EST1083542 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TTTGGATTGGAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGACATTAGGTCCTGAAGAAAACCTGTATTTTCTCAGTATAGCAATAAAAATTCCTTTTTAAAGAAAAAACTCTAGCAATAGAGGTTTCTCCAATCTAGGAGAAAACCATCTAGGAAAGGATCTTCAGATCCAAGTAAAAGCAGTAAGGGAAGAAGAAATCCCCGGAGGAAGAAACCATAAGGTTATATGGCAGGACAAACCAGTAAAACGCCACAGTCTAAGAACTGCATGGCAAGAAACCAACCAGCAATGCGCCATAGTTCTATGAACTACATGGCAGGCAATCTCTTTAACAACTGGTTCAACAACCAGGTTTTGCAGGAACAGGTACAGGATCAGCAGCTGGGAGCAGCAGCAAAGGAAAAGGAAAGCAGCAGATCAACATGAAGGACTACCATCAGTGTAGGATTCAGGAGATCGAGCTAAAGGAGAAAATCGTAAAAATACGAGAAGAGCTAGTATTAGCTGAACAAGAGTTGGCATCAGTCAACAGGAAGCTAAAATCCATGGAAGTGGATGATCCGACAGAAGCAGCAAATCGACCAAGCTTCAAAGCCATAGTCGAAGAACAGCAACAAAAAGAGCAGGAGGCTCGGACCACACCAATACAGACAATCAGTCTGAGACAATGACAAGCTTCGGCCTTTATAGCCGATTTCAAACTCTTAAATCTATTGTTTTTGTCGTTTTGTATTTTGGATTGTTCGTCTGTTGTTTTCTGCTTTGTTGGTTGCGTGTGGCTCCCTGTTTGGCCTCTTCTGCGTGTTTATTACTCTCTGCAGGTGTCAGAGGCATGGCAGAGGCTGCGATAGGCAACGGCGGTGGTGGCTGGTAGCAGGGGAACGGCAGAGCGCGGGATAGCATGCGGCGCCTAGGGTTTCTGGTGCAAACATT | |||||||||
gi|164333732|gb|EV490754.1|EV490754 192G05 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TTTGGATTGGAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTTTAGGCAGACACCAACACAAAATCCCATACAAAAAGAAACAATAGAAGTCCCTCCAATACAAATGAAAAATATAAAAGCTCCCCTCAAAAAAAATCTCCCAAAGAATACAAATATATATAAATAAATGTAAGCTCAAATATGCATAGTAAAAAGCCCCATCAAAGAGACTTAAGCCAGTAACAATATATAATGGAAATTAAAACACTGAAAACAAAAACCATAGCTAAGACACAAATGGTGAAGAAAAGACTTCTTGGTTTAAAGCATTAAACTGAGGATACCCCATCCAATCACCAAGCTCCACACCATCTTTCTTATGGACCATGTTTTCTCTACTCCACTCGTATCGGTTCCAGCAGGGCCTGGTGAAGAAGCGCCGATGCTGGGAGTAGGGGCCTCATTTGATGGAGACGGTGGGCTGGAGGCCGAAGGTGATAGTGCTGGAGACTTAGCTTTGGTCTTGCTAGGGGCCGGAGCTGGAACCGTGGCAGGAGGAGAAGCCAAAGGAGCTGGTGGTGGGGTAGCTGGAGGAGGAGTAGCAGGAGGGGGAGAAGCAGGTGGTGGGGTAGCCGGAGGTGGAGAAACCGGTGGGGGAGTTGCGGGAGGTGGAGTA | |||||||||
gi|164361187|gb|EV482556.1|EV482556 020G11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TTTGGATTGGAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CCGGGTGAGATCGGAGAGGGAAAAGAATATCTCGAGTTTTTTTTTTTTTTTTAAAAAAATCATGAGAGAAGGAAGTAGGCAGCCACCAACATAAAATCCCATACAAAAAGAAACAGTAAAACTCCCTCCAATACAAATGAAAAATATAAAAGCTCCCCTCAAAAAAAATCTCCCAAAGAATACAAATATATATAAATAAATGTAAGCTCAAATATGCATTGTAAAAAGCCCCATCAAAGAGACTTAAGCCAGTAACAATATATAATGGAAATTAAAACACTGAAAACAAAAACCATAGCTAAAGACACAAATGGTGAAGAAAAGACTTCATGGTTTAAAGCATTAAAGTGAGGATACCCCATCCAATCACCAAGCTCCACACCATCTTTCTTATGGACCATGTTTTCTCTACTCCACTCGTATCGATTCCAGCAGGGCCTGGTGAAGAAGCGCCGAGGCTGGGAGTAGGGGCCTCAGTTGATGGAGACGGTGGGCTGGAGGCCGAAGGTGATAGCGCTGGAGACTTAGCTTTGGTCTTG | |||||||||
gi|109837872|gb|DW236433.1|DW236433 GH_RTMF_05R_A07_InvR_27Jul04_063_R Root (free) - 3 weeks after planting Gossypium hirsutum c TTTGGATTGGAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): AACACAAAATCCCATACAAAAAGAAACAATAGAAGTCCCTCCAATACAAATGAAAAATATAAAAGCTCCCCTCAAAAAAAATCTCCCAAAGAATACAAATATATATAAATAAATGTAAGCTCAAATATGCATAGTAAAAAGCCCCATCAAAGAGACTTAAGCCAGTAACAATATATAATGGAAATTAAAACACTGAAAACAAAAACCATAGCTAAGACACAAATGGTGAAGAAAAGACTTCTTGGTTTAAAGCATTAAACTGAGGATACCCCATCCAATCACCAAGCTCCACACCATCTTTCTTATGGACCATGTTTTCTCTACTCCACTCGTATCGGTTCCAGCAGGGCCTGGTGAAGAAGCGCCGAGGCTGGGAGTAGGGGCCTCATTTGATGGAGACGGTGGGCTGGAGGCCAAAGGTGATAGTGCTGGAGACTTAGCTTTGGTCTTGCTAGGGGCCGGAGCTGGAACCGTGGCAGGAGGAGAAGCCAAAGGAGCTGGTGGTGGGGTAGCTGGAGGAGGAGTAGCAGGAGGGGGAGAAGCAGGTGGTGGGGTAGCCGGAGGTGGAGAAGCCGGTGGGGGAGTTGCGGGAGGTGG | |||||||||