| mature miRNA: TTTGGCACCTTGAAACTGGGA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30073004|gb|CB871024.1|CB871024 HC15P15w CH Hordeum vulgare cDNA clone HC15P15 5-PRIME, mRNA sequence TTTGGCACCTTGAAACTGGGA EST sequence (targeted fragment marked with yellow): CACGCGTCCGGTGTTTGAGCGCATAAATGCAGACTTCATATTGGTGCTAAATTCTGTGCGGTGAACGTCAGTTGCTGTGAAGGATGTGGTGGTTGAGACTGTGGGGTGGATGAGAGCACAGCAGCTTCAGAGCCACCTTGTAGCTTGTGGTGGTCACCTATGTGGTCTTGAGTCCTGACTTAGGTATTTGTTCTTTAGGTGTTAGATCTTCATTTCCATCCATGGTCAGTGATCCATTTGTGGAGGATAATGTGTGTTGACAGAACACCATTGGTGCATGCACGGATTGGTGTTGCTTCAGTTTCAAGGTCCCAAAGATGAAGGCCTCCAGCAGCAGGTACTGTTCCAGTTTCAAGGTTTCAAAGCTGAAGGCTTCCCAGAGATCCTGCTGCTGGGTGGTCTTTAGCTTTGGCACCTTGAAACTGGGACTTTAGCTTTGGGACCTGGAAACTGGAGCTGAAGAGTACCTGCTGTTGGGTGCTGACGACGTGGGTTTTGGGCGAGTCATCTTTGATGAGCCCTCTTCAATGGATCTTCACCTATATGCAAGACTCTTATATCGGTGCTAAATTCTGTGTGGTGATTGTCGGTTATGTCT | |||||||||
gi|13090377|gb|BF629873.2|BF629873 HVSMEb0007C20f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hor TTTGGCACCTTGAAACTGGGA EST sequence (targeted fragment marked with yellow): CAGCAGCGATCGAGACAGCAAGAAAAGCTCACTCACTCAGCTAGCTACGCGGGAGTCCCGATCACAGCGAGCTACCCAGCCACTCGACGCGATCGGCATGGCCAGCAAGTCGGCGTCCCTGCTGATCCTCGCGGCGCTGGTGGCCGCGGCGTGCCTCGCCGGGCAGGGCTCGGCGGCGCGCCATCTGCCGGCAGAGAAACCCGCGGAGGACGCGGTGAAGCGACCGGACACGTTCCAGGAGGGGACGGCGCTGATCCCGGGGATCGGGAGGTACGAACTGGGCACCCACTACATCCCGGACATCGGCGGGCTCGACCACAGCATCCCGGCCGCCGCCAACGGGCAGTTCATCCCCGGGGCCGACGACACCTGGGTGCCCAACCCCGGCTTCAAGGTGCCCAACCCTTTCCGCCCCGGCTCCGACTCTCCCTGATGGGTCGAGCACGTCCACGCTACGCCCATCGACCGGCCACACGTTGCACCTATGCATCTATTTG | |||||||||
gi|12027850|gb|AL501635.1|AL501635 AL501635 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare cDNA clone HW04N19 3', mR TTTGGCACCTTGAAACTGGGA EST sequence (targeted fragment marked with yellow): TTTATCGCCAGTTTCCACTTTCAAGGTGCAAACAAGAAGCTCCTGAGGGAGTACCCCAACCTGTTCAAGTACTCCCAAGGACATCTACCAGATCCCCGGGATCAGCAGCACGGTGAACATGGAGCCCATCAGGCAGCACTNCTTACGGGAGCCCACCCGTCCNTCAACCCCTACGGGATCATCCCCCAAGGCCCCAACATCGAGTACAATGCTCCCCATGACAGAGAGAGGCTGTTCCTGTAATTTTTAAAAAAACCCCGTTTTGCTCGTGTGCTTGAGGGTGCTGTGGTTTTGCTTTGCTTGTGTCCGGAGCTGAAAGCCTTATCTCGAATAAAGATCTATGCCTTTGATGTTCGCCGGGAGCAGCATGCGTGTAATAGGGTTCTGTGCATCTATGTCGTTTTCACCGTAAATCAAGACGAAAGGTAAGCATCCATGGTTGTGTTGCACCAAAAACATCAAATCAAAGCAAGAAATTGNTGAACTGTATTAATGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|18226730|gb|AV930933.1|AV930933 AV930933 K. Sato unpublished cDNA library, cv. Haruna Nijo second leaf stage seedling leaves TTTGGCACCTTGAAACTGGGA EST sequence (targeted fragment marked with yellow): CCATGGTCAGTAATCCATTTGTGGAGGAATAATGTGTGTTAACANAACACCATTGGNGCATGCNCGGATTGGTGTTGCTTCAGTTTCAAGGTCCCAAAGATGAAGGCCTCCAGCAGCAGGTACTGTTCCAGTTTCAAGGTTTCAAAGCTGAAGGCTTCCCAGAGATCCTGNTGCTGGGTGGTCTTTAGCTTTGGCACCTTNAAACTGGGACTTTAGCTTTGGGACCTGGAAACTGGAGCTGAAGAGTACCTGCTGNTGGGTGCTGACGACGTGGGTTTTGGGCGAGTCANCTTTGATGAGCCCTCTTCAATGGATCTTCACCTATATGCAAGACTACTTATATCGGTGCTAAATTNCTGTGTGGTGATTGTCGGTTATGTTCTTACAA | |||||||||
gi|9418740|gb|BE420897.1|BE420897 HWM003.F10 ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM003.F10, TTTGGCACCTTGAAACTGGGA EST sequence (targeted fragment marked with yellow): TGGTGCCTCCTTTCGAGGCCCCAGTAATTCTGCACCAGCCCGTCTGCGGCAAAGGCCTCGGCGAGCCGCTCCGCGGCGCGGCCGGGGTGATCCGGGAGCTTGGCCTGGTCCCCGTCGCCGAGGTGTGAGTGGCTTCGACGTCCAAAGTTCTTCAAACATGAGTTCCTTCCATGCTTTTGCTGAAGTTTATTATACTACTCCTACATATATGATATATGGTTGGCAAAATATTTGCACCATTCTTGGTAGAAAAGGAGAGAAGAAACCATGAGAGATGAAGGTGGGTGCGATGTAATGCGGATAATTGCATATTTCAAGTTCAATAAAACAATCTTTTATATCTAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAATTCGCCCTATAGTGAGTCGTATTACGCGCGCTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGAAATTGTAAGCGTTAATATTTTGGTAAAATTCGCGTTAAATTTTTGGTAAATCAGCTCATTTTTTTAACCCATAGGCCGAATTCGGAAAAATCCCTTATAAATCAAATGAATAGACCGAGATAGGGTTTGAGTGTTGGTTCCCATTTTGGAACCAAGAATCCCCCTATTTAAAAGAAACCGTGGGACCTCCAAACCGTGCCACAAGGGGCCAAAAAAAACCCCGTCCTTATTTCAAGGGGCCAAATGGGGCCCCCACTTTATCGGGCGAAACCCACCTTCAACCCCTTTAACG | |||||||||
gi|16302139|gb|BI955640.1|BI955640 HVSMEm0023N24f Hordeum vulgare green seedling EST library HVcDNA0014 (Blumeria infected) Hord TTTGGCACCTTGAAACTGGGA EST sequence (targeted fragment marked with yellow): AGATGGGGGGATGGGGGGGTTCCTCCATTCTCTCAGGTCCATGGGCCAATTATGTTGGAACTCCAGGTGGAACTATACCATTTTCAACCAACAGTGGAGCCTTTGAGTTTCAAGGTGCTAATGGTGTGATACCCAATTGGAGACCTAGGCCTTCTACTCGGATGAGGGGGGTAGGACTTTCTCTAAGAAGGATATTAGGAACATTTTGATTGACAAGATGAAGAGCGATTTGAGGGAGAAGCTAAAGGAGATAAGAAGTAAACCACTCCAAGTTACAGTTAATGGAAAAGCAAGCGAGAAACATGTGGTTAACGAACATGTTGAGGGTAATGAAACTCTTGCGTCAGATGATTCTACTACAAACAAAGATGTCTGCGCTGATCCAGAGGAGAATGGTTCTGCTAATAGTGCAGATGCTGAAAATGAAGATGACAGCACTTTCTCCTATACTGTTCCTGATCCTGATTTCCATGATTNTGACAAGGATCGTACTGAGGAATCTTTTCAGAGTGATCAAATTTGGGCTTCATATGATGACGAAGATGGCATGCCTCGTTATTATGCATATATTCAGAAAAGTATCTCCTTGAATCCATTTAAGGTCAAAATAAGTTATCTCGCATCGAGGACAAATAGTGAATATTGACCATTGAATTGGGCTTCTTCCG | |||||||||
gi|30069807|gb|CB867831.1|CB867831 HC15P15y CH Hordeum vulgare cDNA clone HC15P15 3-PRIME, mRNA sequence TTTGGCACCTTGAAACTGGGA EST sequence (targeted fragment marked with yellow): AGACATAACCGACAATCACCACACAGAATTTAGCACCGATATAAGAGTCTTGCATATAGGTGAAGATCCATTGAAGAGGGCTCATCAAAGATGACTCGCCCAAAACCCACGTCGTCAGCACCCAACAGCAGGTACTCTTCAGCTCCAGTTTCCAGGTCCCAAAGCTAAAGTCCCAGTTTCAAGGTGCCAAAGCTAAAGACCACCCAGCAGCAGGATCTCTGGGAAGCCTTCAGCTTTGAAACCTTGAAACTGGAACAGTACCTGCTGCTGGAGGCCTTCATCTTTGGGACCTTGAAACTGAAGCAACACCAATCCGTGCATGCACCAATGGTGTTCTGTCAACACACATTATCCTCCACAAATGGATCACTGACCATGGATGGAAATGAAGATCTAACACCTAAAGAACAAATACCTAAGTCAGGACTCAAGACCACATAGGTGACCACCACAAGCTACAAGGTGGCTCTGAAGCTGCTGTGCTCTCATCCACCCCACAGTCTCAACCACCACATCCTTCACAGCAACTGACGTTCACCGCACAGAATTTAGCACCAATATGAAAGTCTTGCATTTATGCGCTC | |||||||||
gi|16288927|gb|BI948482.1|BI948482 HVSMEl0009M12f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulga TTTGGCACCTTGAAACTGGGA EST sequence (targeted fragment marked with yellow): GCAATAGCACGGTGTGTCGAAGAAGAGGGTANCATCTGATCTGCTTCCCTTCAAAAGCAATGGCGTCTGCTACCCTCCTCAAATCGTCTTTCCTTCCCAAGAAGGCCGAATGGGGCGCCACGCGCCAGGCCGCCGCTCCCAAGCCGATGACCGTCTCCATGGTTGTCCGTGCCANCGCGTACCCCGATGAGCTTGTGAAAACCGCGAAAACCATCGCATCGCCTGGCAGGGGTATCCTTGCCATGGATGAGTCAAATGCTCCCTGTGGCAAAAGACTTGCCTCGATTGGCCTTGAAAACACCGAGGCTAACCTCCAGGCTTACNGGACCCTTCTTGTCACTCCACCAAGCTTGGGAAACTACATCTCTGGTGCTATCCTCTTTGAAGAGACCCTCTACCAGTCGACTGTTGATGGCAAAAAAATAGGTGACATCCTTGTCCAACAGGGGATTCTTCCCGGTTTCAAGGTGACAAGAGGCCTGTGCCCTTTTTAGGTTCCAACCAGAGTAATAGTCCCAAGCACNNATGACCGTGCTTCCATCCAGCACGGTGATCCCAAACAAATGCGTATCTTTGCAAAAGCGGCACTGTATTTAAAGGTTAATGAGTACAAAATCAATCAGATGGAGATGGAACAACCAGGGAGATGTAGAGAAATAGGAAAAATACGCAGGGGGTGGTCAATGAGACATAAGAAACAGCTGTAGAGACATATCTCGGAGTAAACCTAGCACGAGCAGAAACGTGTGGTTAGACAAAATATGTTATGCCGTATACAAAATAGTATGGGAATCGATTATTAAGCAGATGTGCGTCCGCGACGACGGTTAATGTGGTTATCTAAAAGATACGATATATAAACACAGGAGGATTGGGAAAATAGCTGAATCCGCAATAGAATGTAAGTCGCAGCGAGCGAGAGTTATAGGCAGCGTCGCTCGAAGTTACCGTGGTATGCTGGTGGGCGTTAGACCGTACGTAATGAAGAAGAGTAGGAGTCGTGACGTAAGACGACTCCA | |||||||||