| mature miRNA: TTTGGTATTGGTCCCTGCACTT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|148767038|gb|ES613732.1|ES613732 MTGland_B014_2007-05-07/MTGlandB014_A03_016_1 Medicago truncatula A17 glandular trichome Med TTTGGTATTGGTCCCTGCACTT EST sequence (targeted fragment marked with yellow): TTACGGCCGGGNNCCTGCACTTTGTAAAAATATATATATTGGTGCCACATGGCATGAAATGATTGGGCCACGTGACACTCCCTTAGTTTTGTGTTTTTTTTTAACAGAAAGTTTAACANAGTGACCAATACCAATATTTTTACAAAGTGCAGGGATCAATGCCAAACAAAAAAAAGTGCATGGACCAATACCAAAATTTGATGAAAGTGCAGGGACCAATGACACATTTAAACCTTAAATGAATTGCATGTGTACAAGTCACCAATTTATAATCTATAAATATCAACTTTTAAAAACCTTTGAAGCCCACCAATACAACACTTCTAAAAATTTACTAAGTGAGTCCTATCAATAACTACACATCATTACATTTCAATAATAATTTTTATTTTTTCTATCAATAATCGTAAGTTGTTTTTTAAAAAATATATTTGTGGGACCCACACGTTATAGGAGATAAAGTATGCTTGCATAAACATTCTCTATCACACTTATTTTCAATTAAGCATGATTTGTAATCATTCTTCAATGGAGGTAGTTATTAAGCATCACATGCTACTAGGCAAAGAAGCTTTCATCGGAGATGGTCTAAAATTCTTCTTCTTAATAACTCATTATAAATATTAGGTTTTGTCAATCAAACCGTTGAATTAAAAATTCTTATTAAGTANATAAACACTTTCAATTTTCATAAAATTTCAAAATTATTTGATGCTTCACCTAATAATAACTTCAAGTGAACAAATAATTAACTTTTAAAAATCCAAATTTTGTC | |||||||||
gi|157979566|gb|EX527838.1|EX527838 MTGland_A033_2007-06-18/MTGlandA033_G09_034_1 Medicago truncatula A17 glandular trichome Med TTTGGTATTGGTCCCTGCACTT EST sequence (targeted fragment marked with yellow): TTCCNAATCTGAATCAACTTCCATGTTGGTCGTTAGACCCTACAAATTCAGTTTATAAATCAAATTAGAAAGAAAAAAAAAATTTAAATATGCCTTTAGTCCTTGCACTTTCATCAGATTTTGGCATTGGTCCCTACATTTTTTTTGTTTTGAATTGGTCTCTGCACTTTGTAAAAATATTGGTATTGATCCCTCTATTAACTTTCTATTAAAAAAAAACACAAAACTATTGGTATTGGTCCCTGCACTTTGTAAAAATATTGGTATTGGTTCCCTGCACTTTGTAAAAATATTGATATTGGTGCCACGTGGCATGAAATGATTGGGCCACGTGGCACTCCGTTGGTTGTGTTTTTTTTTTTTTTAACAAAAAGTTAACAGAGGGATCAATACCAATATTTTTATAAAGTGCAGGGACCAATGCCAAACAAAAAAAANNGCAGANACCAANGCCAACATTTNANGAANGNGCANGGACCAANGNCACATTTAAACCAAAAAACAAAAAACAAAAAANGCAAAAACAAAANAAAAAGGAAAAGACCAATGGTGAAACACTNAAAATGGTCTCNTAAATTGACACAAAAGTAACACACATATTAATTGTGTGATGAACCTGNCTGTGGTTNNAACTTATACATAATTTNNGTCCAAACACACTTACTTGCTTTTGCTTTTTCTTTTTAAAAAAGCTAAAGTGGACACCAAA | |||||||||
gi|157978139|gb|EX526411.1|EX526411 MTGland-A071_2007-08-18_1/MTGland-71_G18_037_1 Medicago truncatula A17 glandular trichome Me TTTGGTATTGGTCCCTGCACTT EST sequence (targeted fragment marked with yellow): CGTGGCACCAATATCAATATTTTTACAAAGTGTAGGGACCAATACCAATATTTTTACAAAGTGCAGGGATCAATACCAATAGTTTTGTGTTTTTTTTTAACAGAAAGTTAACAGAGGGACCAATACCAATATTTTTACAAAGTGCAGGGACCAATGTCAAACAAAAAAAAAGTGTAGGGACCAATGCTAAAATCTGATTAAAGTGCAAGGACTAAAGACATATTTAAACCTAATTTGATTAAAAATTTGGATCCGTTCCTGCACACGATACAAATTACGAATATTTATGAGCTAGATATCAATTTTATCTACAATTAAATACGTACAAGTACTTGTACCG | |||||||||
gi|157978139|gb|EX526411.1|EX526411 MTGland-A071_2007-08-18_1/MTGland-71_G18_037_1 Medicago truncatula A17 glandular trichome Me TTTGGTATTGGTCCCTGCACTT EST sequence (targeted fragment marked with yellow): CGTGGCACCAATATCAATATTTTTACAAAGTGTAGGGACCAATACCAATATTTTTACAAAGTGCAGGGATCAATACCAATAGTTTTGTGTTTTTTTTTAACAGAAAGTTAACAGAGGGACCAATACCAATATTTTTACAAAGTGCAGGGACCAATGTCAAACAAAAAAAAAGTGTAGGGACCAATGCTAAAATCTGATTAAAGTGCAAGGACTAAAGACATATTTAAACCTAATTTGATTAAAAATTTGGATCCGTTCCTGCACACGATACAAATTACGAATATTTATGAGCTAGATATCAATTTTATCTACAATTAAATACGTACAAGTACTTGTACCG | |||||||||
gi|148765288|gb|ES611982.1|ES611982 MTGland_A014_2007-05-10/MTGlandA014_D12_045_1 Medicago truncatula A17 glandular trichome Med TTTGGTATTGGTCCCTGCACTT EST sequence (targeted fragment marked with yellow): TATATATTTGTGATATGATAATTGATTAAAAGCTAAAANAAAGTTTTGGTCCCTGCNAATATGTCTCGTTTTGATTTTANTCCCTGTAATTATTTTTGCAGTGACCATTTTAAAAATCAAAAGATTTTGCAATGACTATTTTTTTAATAAATGGGTTCAGTCATCATGTGCCTTATCATGTGCCACGTGTGCNAATCATCNCAAAAATGAAGTCAGGGACCAAAACCAAAATGAGGCATATTTGTAGGGACCNAAACCATAGTTTACCTTGATTAAACTATTTTATTGAAAGGAAATGGGTGTAAACTTTCTTATAGTATGTGACTTTGGTGTATCTTATTTCTTTTTGATNGAGAAGTTTTGGTATTATCTATTTTATGACNTTATTTCTCGTGTTTTAAGTATGAACCAATTTGGATAAGGAAATTTANCTTACATTGATATATGTTTGTANGTACCNAGAAATGAAATATGAAGTTGTTGTGTAATAGAAGCGTATAAGGGGACAAAAATTGTGTATTATTANATTGTACTCCATCCGTTTCNAAATAANTGTCGCTTTAGCAAAAAAAAATTGTTTCAAAATGAATGTCACTTTACNTTTCCAATACAACTTTAATTTTTTTTCNTCCNACTTTACCCTCNATAAATACTCCNACTTTTTTCTCACACAATTTTCCATG | |||||||||
gi|157978139|gb|EX526411.1|EX526411 MTGland-A071_2007-08-18_1/MTGland-71_G18_037_1 Medicago truncatula A17 glandular trichome Me TTTGGTATTGGTCCCTGCACTT EST sequence (targeted fragment marked with yellow): CGTGGCACCAATATCAATATTTTTACAAAGTGTAGGGACCAATACCAATATTTTTACAAAGTGCAGGGATCAATACCAATAGTTTTGTGTTTTTTTTTAACAGAAAGTTAACAGAGGGACCAATACCAATATTTTTACAAAGTGCAGGGACCAATGTCAAACAAAAAAAAAGTGTAGGGACCAATGCTAAAATCTGATTAAAGTGCAAGGACTAAAGACATATTTAAACCTAATTTGATTAAAAATTTGGATCCGTTCCTGCACACGATACAAATTACGAATATTTATGAGCTAGATATCAATTTTATCTACAATTAAATACGTACAAGTACTTGTACCG | |||||||||
gi|157980277|gb|EX528549.1|EX528549 MTGland_A043_2007-05-31/MTGlandA043_B05_023_1 Medicago truncatula A17 glandular trichome Med TTTGGTATTGGTCCCTGCACTT EST sequence (targeted fragment marked with yellow): TTACGGCCGGGCACGCGGCACCNATATCAATATTTTTACAAAGTGCAGGGACCAATACCAATATTTTTACAAAGTGCAGGGACCAATACCAACAATTTTGTGTTTTTTTTTTTNA | |||||||||
gi|157980277|gb|EX528549.1|EX528549 MTGland_A043_2007-05-31/MTGlandA043_B05_023_1 Medicago truncatula A17 glandular trichome Med TTTGGTATTGGTCCCTGCACTT EST sequence (targeted fragment marked with yellow): TTACGGCCGGGCACGCGGCACCNATATCAATATTTTTACAAAGTGCAGGGACCAATACCAATATTTTTACAAAGTGCAGGGACCAATACCAACAATTTTGTGTTTTTTTTTTTNA | |||||||||
gi|8747458|gb|BE204174.1|BE204174 EST396850 KV0 Medicago truncatula cDNA clone pKV0-14B2, mRNA sequence TTTGGTATTGGTCCCTGCACTT EST sequence (targeted fragment marked with yellow): TCTGCATACAAATTCTGCGGCACTTTCTGAATATGTTAAAGCATTGGTGAAAGTTGATAGGCTGGATGAAAGTGAATTACTCCAGACATTGAGAAGAGGTATTTCTAATTCAGTGAGAGAAGAAGAAAGTGGTATCGGTGGCCTTGCTGTTCTTAGAAATGTGGGAAAATCTACAAAAGATGGAATTCTTGGAACTGCTGGTGCTCCTATTCATATGGTTGCTGCATCAGAAGGTGGAAGTTTCAAAGAGCAAATATGGCGTACAATTAGGTCTGTTGCAGTGGCCTTCCTCGTGATTTCGGGTGTAGGAGCTCTCATTGAGGATAAAGGAATTAGTAAAGGACTTGGTATGAATGAAGAAGTGCAGCCCAGTGTAGAGACCAGTACTAAATTTAGTGATGTGAAAGGTGTAGATGAGGCAAAGGCGGAACTTGAAGAAATTGTTCATTACCTAAGAGATCCTAAGCGCTTTACTCGTCTTGGTGGCAAACTCCCAAAAGGTGTTTTGCTTGTTGGCCCGCCTGGCACTGGTAAAACAATGTTGGC | |||||||||