miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTTGTACTCCCTCCGTCCCGT
species: Festuca pratensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|237621742|gb|GO893483.1|GO893483 RDD_cLiFpEfI12nb_28x1_3_P09_cLibkit5_H05 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone

TTTGTACTCCCTCCGTCCCGT
||| ||||||||||. |||.|
AAAAATGAGGGAGGTTGGGTA

EST sequence (targeted fragment marked with yellow):
AGGGGCTCGTGGAGAGGTGGAGGTTCGGTGGTCGCTGTGACTGCGGCGGATGGGATTACGGTTGCCCTATCAGAGTGCTGAACAACGACGGCGGCTCTTTTTCATCGCCACAGGACAGCAAATCAGTAGAGTTGTCACTAACGGGCGTGAGGAGTAAGGAGCCGGCGTTGAGGCTGGTGAACGTCACAGAGGGTTTGTACATCATCTACTTCGACCCGAGCCTCGTCACACCATTGCAGTGCTTCTCGGCTGGAGTAGCTGTAGTCCACAGCCGGGCGCCCCAGCTGTACCCGAAACTGTGAAGCATTGCCAAGATTTGAAGAAGTTATGTATTCCCCTCCGACCCATAAATCTGCGACAAGTAGTATGGGTTGGAGGGAGTAAAAAAATAGATAGGTGAGGTTAAGGAAAAATGCCCTGCTCGAGCTGCTAACTTGCCATTTAATCTGATGAAATGAGGCCGGGCAGAAGGGTGGAGCTATGGAAGAAGAGTCATGTAAAAAATGCTTTATAGATTGTTTAATCTAATTGCTGCCTAACGACGATATTCTGGGTCTGAAAAGGCTTATAGCTGCTTGTAGCAAGAGCTTAGGGCCTGTAGATACTTATGTGTACCTTTTGTCCACATCCAAGGCACTTTCTACACCTTCATCGTCACAAAAAAAAAAAAAAAAAAA