| mature miRNA: TTTGTTGGTGGTCATCTAACC species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198322091|gb|FL990657.1|FL990657 CCHY20883.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY20883 5', mRNA TTTGTTGGTGGTCATCTAACC EST sequence (targeted fragment marked with yellow): CTAGACTGGCTTGCGAGTAATGCAGCTCCGAACTTGTTTTGTTGGTGGTCATCTAACCATGCTCCGATCCGGTGCATGGATCAAGGATTGCGGTCATGACCCATGACCGTCATGGACTGAACATGGTCTTGCGTGCGCGGTTAGATGACCATCAGCAAACATGTTCATGAGGCATGCAGAAGCAAACTGCTCCCTACCGATCAGAGATTACCACCGCACCGCCGGCCACGACAACCTCGCCGAATGTAGAACCTTCACGAGGAGGCATGGCGTGCTTCGAAAGTTCTTCCAAGAAGTTGAAGAAGTGAGAGTGCGTGTTTCGTGGAGATCCGAGTGCGATTGTTCTGTCGCTTGGACGCCCTTCACTCCGTGGAAAAAATGTTCATGCTTGCTCAGTTGCTAAAAAAAAAATTGTTCATCGCTTCATCGTCGTCGTCTCTATTCGTCATCATCATTTGAGATATAGCTTCTGAATCCCCCAGTTACTCTCAGAGCTATTTGATTCTCCTACATGATTTGGTGACGAGCTGATCATGAGCAC | |||||||||
gi|304518525|gb|HO317910.1|HO317910 CFHA555.g1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA555 3' TTTGTTGGTGGTCATCTAACC EST sequence (targeted fragment marked with yellow): ATGTGTACCGTGGTCTGTACTTCGGGCTGTACGATTCTATCAAGCCAGTTGTCCTCACAGGCAGCCTCCAGGACAACTTCTTCGCGAGCTTTGCCTGGGTTGGCTGACCACCAACGGTGCTGGTCTTGCATCTTACCCCATTGACACTGTCCGCAGACGCATGATGATGACGTCTGGTGAGGCTGTCAAGTACAAGAGCTCCTTGGATGCGTTCCAGCAGATCCTGAAGAAGGAAGGCCCCAAGTCTCTGTTCAAGGGTGCTGGTGCCAACATCCTCCGTGCCATTGCTGGTGCTGGTGTGCTTTCTGGCTATGACCAGCTCCAGATCCTCTTCTTCGGCAAGAAGTACGGCTCCGGCGGTGCTTAAATGGAGAAAAAATGATGACGAACAAGAGCAGTTTGTTGCCGGTCCTGCCCAATCGGGATCTGGTGAAGTTTTTGCCTTTCATATCGAAAAAGTAATAATTCATGTAGAGGGAGGATTCTTCCAGCATTCGTTTTGGTTGGAGACTTCGATCTCCAAACACAATCGTAACTATCCTAGATGGTGGCATCAGTCCCCAAAAACATTTATCGTCATAGGTTCAGTCGAGTCTGCCCAACTTTACCAGCGGGGCAATTTTCCTTGCATACATTGCCTTCGATTAAATATCGGATGAGTCAAGTTGATGCAGTTGATTTTACTCCTACTTGTTGCAATGGTTGGTTTTGTTCGTGACAGCATTTGCCTATTGTATTCCATATGAGTACTGCATTTCTCTGACCT | |||||||||
gi|198344564|gb|GD011375.1|GD011375 CCHZ4275.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TTTGTTGGTGGTCATCTAACC EST sequence (targeted fragment marked with yellow): TTCGTAGCTACTCTCATCTGCTTTCTCGTTCCTGGCGAGACTGGCTTGCGAGTAATGCAGCTCCGAACTTGTTTTGTTGGTGGTCATCTAACCATGCTCCGATCCGGTGCATGGATCATGGATTGCGGTCATGACCCATGACCGTCATGGACTGATCATGGTCTTGCGTGCGCGGTTAGATGACCATCAGCAAACATGTTCATGAGGCATGCAGAAGCAAACTGCTCCCTACCGATCAGAGATTACCACCGCACCGCCGGCCACGACGACCTCGCCGAATGTAGAAGCTTCACGAGGAGGCATGGCGTGCTTCGAAAGTTCTTCCAAGAAGTTGAAGGTAGCTGCACTGCTTCTCTTTGCGTGCTTCTGCCATCGGTTAAAATTTTGCTACTGAGTTTCGTGTGTTGTGTGCAGAAGTGAGAGTGCGTGTTTCGGGGAGATCCGAGTGCGATTGTTCTGTCGCTTGGACGCCCTTCACTCCGTGGAAAAAATGTTCATGCTTGCTCACTTGCTAAAAAAAATTGTTCATCGCTTCATCGTCGTCGTCTCGCGATTTACAGTCCATCCATACAAAAAGTTTTGTAAATATATTTTATTTAATACTCCATGCATGTATCCAAACATTCGATCTGGTGTTTTTGGGTGTAAAAACTTGGGATCTAAATAGGGCCAGTCAGTTTGCAGAGTACTAGTACATAAGAAGTAATTTATAAGAGTTTGAATATGAATGCAAATTTTCCGTAC | |||||||||
gi|304505973|gb|HO301011.1|HO301011 CFCB1259.b1 CFCB Panicum virgatum WS4U normalized leaf Panicum virgatum cDNA clone CFCB1259 TTTGTTGGTGGTCATCTAACC EST sequence (targeted fragment marked with yellow): GGTTCAGATAGGCGCGCGACCGCGACGCTTCCTTCTTCTTCTTCTCTCCAAGCAGAAGCTACCCTTTTTCATACCTATACATCCACCATTTCTTTCCTTCGGCTAGCTAGCGAGTGCAGCTCCGAACTTGTTTTGTTGGTGGTCACCTAACCATGCTCCGGTTAGTGCACGGATCATGTCCATGACCTCATCTCGATCGTGCAAAGGTTAGATGACCATCAGCAAACATGTTCACGAGACATGCAAAAAAAGCAAACTGATCTCTACTGAACAGAAATTACCAGAGGCCACGATGAAGGTTTGCGAAGACGCATGGCGTGTTTCGAGCTCCTTCAGCATTACTCTCCTCCGGAGATAGCAAAGGTGGCTGTACCGAATCTCTTCTGCCATCAGTTGAATTTTTGCTGCTCGGCTTCGCGTATGTTTTGTGTGTGCAGTGCAGATGCGGTGTCTGTTTCACGGAGATCCGAGTTATTCTGTCGCTTGCACGCTCTCCACTCCATGGAAAATTGTTCATCGCTCCATCGTCATCATCTGAGATATTGTTGGAACTGTGAATATCTTTTAATTTGTTCCCCAAAATTATTGACAGAGAGACCTATTTGAGGTTCCACGCTCTTTTGTAAAAAAAAAGAAAA | |||||||||