| mature miRNA: TTTTCTTCTACTTCTTCCATT species: Populus trichocarpa x Populus nigra database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52520639|gb|CV267664.1|CV267664 WS02032.B21_F20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02032_F20 3', TTTTCTTCTACTTCTTCCATT EST sequence (targeted fragment marked with yellow): GTGAAGGTAGCTGATACCAATCACAATGGTCAAATAGAAGGTGTAGAAGAAATCGAGAAGCTTGTGAACTATGCTCAACAACATTTGCACATGAAAATTCATCGAAGCCATGGTAGGTGGTGAAGGTGTGTATTTGTCTCTTTGTGCTTGTGCAAGTGATGATTAATAATTCGTGATTCTCCCATGGAATGATCAGCTTCCATTAATTTGTGGTTGAGTTTTTTCCTTCTGTTCTCGACACCATTTGTCTTTGATGGACGTATGCTAGTCCTTCACGAGGTGACAACTTAGTCTGTTAATGGGGTTTAAAACGGCATGTTATTCACAACCAGAGGACTGGGAACATTTGCAATGTCTCTCTCCCCGATGGATTCATGATGGCATGTCGATCTGTGCAAGTTCACCATGTTTGAACTTTGTTCTTGAACATCATTTGTATGGAATAATTATTTCTTTTGATGCCCATTATTATAAAAATAAATAAATAATCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52516137|gb|CV263162.1|CV263162 WS02020.B21_I07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02020_I07 3', TTTTCTTCTACTTCTTCCATT EST sequence (targeted fragment marked with yellow): GAGTTTTTCAAAAGCAATGGTGGATCTTGGAATACCCCATTTGGGAAATTTTTTCTTCAATGGTACTCTGGGATGCTGCTGCTTCATGGCGAAAGGATATGTAGAGAAGCGAAGACCATCTTTCAGGGCACTGAAATTGATACTTCAGCCAAAGTGGCTGGGATCCACTGGCATTATGGCATGCAATCACATCCTTCTGAGTTAACAGCTGGCTACTACAATACTTCAAGAAGAGATGGGTACTTGCCAATTGCTCGCATGTTGGGTAGGTACGGTTTTGGTTTATGCTGCTCAGGCTTTGGAATGAGAGACGTGGAAGAAAAAAAGACAAACCCAGTCAGCAGTCCAGAGGGTTTTCTAAAACAGCTTTTATTGGCAGCTAGGGTCTGTCACATACCGATAGAAGGTGAAAATTCTACCACTTTTTTGGAAGATGAATCGTTTGAACAGGTGCTAAAGATGTCAAAGTTCTACACATATGGTCTTGAAAGCCCCACCTTTTCTTTCAACTTTATGAGGATGGACAGATACCTCTTTGAACAGCATAAATGGGTTCGCTTTACTCGTTTTGTGAAGCAATTGTCAGGGGCCAATATTTTTCGAGCCAGATTAGATTTTGGAGGCGATGTACAACCAACTTCAATGTCAGATGTTGTAAAAGTTAGAGCTGCGTATACATATTGTTAAGGAAGGAGATTCAACCCATATCCAGCAGCAAGGCAAATCATCTGATGATATCCAATCAATTGTTGCCAAATGTGTAGTGATGCCTCACTTTCAATCAATTTTTTTTCTTTTAACCATATGCAGGGTTCTTGTGAACCATATTATTTGTCCGTGTACATCTTGCCTCCCTAATATTTTTGAAGTGGCTGGCATCTCATCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73942208|gb|DT525518.1|DT525518 WS02045.C21_I24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02045_I24 3', TTTTCTTCTACTTCTTCCATT EST sequence (targeted fragment marked with yellow): AGGCAAGCGATTATGGTGCCTACGAATTTGATCCTGAAGTTGATTTTACACAGTTCTTGGAAGAAGCTAGACAACATGCAAGAGAAATGAATCTACAGTCCCCGTTACAGCATCCAGAATCTGGAAAAGGAAGAGTAGAAGAAGAGAAAAAGAGCAGGAGGTCCTGGAAACGCACTCTCCTCAAATGGTGGAAAGCTGAGAAAAAGACCAAGCCTACCGTGGAACCGACAAATAGCTCTCACATTTCAAATCCAAGAAAGGGTCATGTTTCCGGTCCTATATATGGGAGTGCCAGAGGAGTCGATGCAAGGCATCGGCGACAAACATCTGGGCCACTGACTAATCTTTTCAACCATTCAAAGAGGGTGGAGAATGAGACACCTTATATGTGTCTCGACCAGCTTAATAATCCTCATGGTGTCAAGGCATATGGACCTGTTTACTTGGTAACATAGTGTTTCAGCGACAAAAGCTTTGCGTCGGAACTTCTTCATTTTCTGTAGTAAAGCATCTCTCGGTTGGAGGATTGTGTCAACAAAATGTATCAGATCATTCGAACAGGCAGAAACAACTAATATCTGGAATCCAAATATCAACTTTAATGTGCAGAGTAGATTATCTATAGTAGAAAGAGCCCGCAAGCAGGACAACTTGTCAGTTTTATTCTATTTTCTGTCTCTTTCTTTCCTTTTGTTTGTTTGTTTTTTGAGTCAGAACGCGTGACTCAGATAAAAGATTAAATTTTGAAGTAAAAAACTATTCCAAGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52515593|gb|CV262618.1|CV262618 WS0202.B21_A22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS0202_A22 3', m TTTTCTTCTACTTCTTCCATT EST sequence (targeted fragment marked with yellow): ATGGATGGATGGATGCAGGTCGTTAGAAATGGAGGTGATGCCAAATCTGCTGGTAATGGTCTTAAATTGGAATCGGGGCTTGGAATTTTTGATGCTTTCTTTGCCAGCTTGTCAATGATTTTGGTCAGCGAGTTTCTACTTCAGCCAAAGAACCCTTACCATCTCCGACTTTGTTCTCTCTCTCCCTCTCCCTCTCCTTTCTTTCTTCTGACACTGCAAGGCATTGAATGGAATGGTCCAGCCAGCAACTACACTGAACTTTTCTTATTCTCAATGTTGGTGAAGCTTAAAGCTGTTGTGCATGTCATTTAGGTACTTTCTACTGGACTTGGTAGAATCGTGCCAAATTTAATTTCAAGGAAGCATACAAATAGTGCAGCCACCGTTCTTTATGCATTTTTTGGCCTGCGGCTACTTTACATTGCCTGGAGATCGGATTCAAAATCATCACAGAAAAAAGAAATGGAAGAAGTAGAAGAAAAGCTTGAGGCTGGCCAAGGGAAAACATCCTTCCGCCATTACTTTTCAAGATTTTGCACACCAATATTTTTGGAATCATTTATTTTAACTTTTTTAGCTGAGTGGGGAGACCGTAGCCAGATTGCTACAATTGCTCTGGCAACACACAAAAATGCCATCGGCGTAGCTGTGGGGGCTACTTTGGGACATACCATCTGCACCTCCCTGGCAGTGGTTGGTGGAAGCCTTCTGGCGTCTAAGATCTCTCAAGGGACAGTTGCAACCATTGGAGGCTTACTTTTCCTTTGCTTTTCCTTGTCGTCTTATTTCTATCCTCCTCTATAACAGCTATTTATAACCTACTGTAATTAAATTACAATTAAATTAAGTATAAGTGAAATGAATCAAAAAAAAAAAAAAAAAA | |||||||||
gi|52513054|gb|CV260079.1|CV260079 WS02013.B21_B13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02013_B13 3', TTTTCTTCTACTTCTTCCATT EST sequence (targeted fragment marked with yellow): GCCCGAATATTGGGTAGCTGTCGTTAAACCGGGTAGAATGATTTTATGAAATGGGCGGGGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCAGCGTCCAAAATGCCTATACGAACTCAATTCATTATTTTGAGATAGGAATACAGAACTAAAAAAAAAAGGCCTTTGTTAGGAAAAAATTCGCAAGTTTCTTTTTTTTTTTTTTGTTTTGGACAAACAATATTTCTTTTTTTTGCCCCTTTCCATTGAAATAACAGATTAAAAAAAGAATATGATCCAATCTCAGACCCATTTGAATGTAGCAGATAATAGCGGAGCTCGAGAATTGATGTGTATTCGAATCATAGGAACTAGTAATCGCCGATATGCTCATATCGGCGACATTATTATTGCTGTGATCAAGGAAGCAGTCCCCAATTCACCTCTAGAAAGATCTGAAGTGATCAGAGCTGTAATTGTGCGTACTTCTAAAGAACTCAAACGCGACAACGGTATGATAATACGATATGATGACAACGCTGCAGTTGTAATTGATCAAGAAGGAAATCCAAAGGGAACTCGAATTTTTGGTGCAATCGCTCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAAGTATTATAAAATAAAGCATTATAAGAACATTATAAGATATAAGATGAGATATAAACCATAATTTATAATATTTGATATTTGAACGAAATCAATTAAATTAAAATTAATTAGTAGATTGTGTTTCACGCATATACCTTTAATAAAAATGAATATTTAATAAAAATAAAATAATAAAGTCATAAAAAAAAAAAAAAAAAA | |||||||||
gi|52513018|gb|CV260043.1|CV260043 WS02012.B21_P23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02012_P23 3', TTTTCTTCTACTTCTTCCATT EST sequence (targeted fragment marked with yellow): TTTCTACTGGACTAGGTAGGATTGTGCCAAATTTGATATCAAGAAAGCATACAAATAGTGCAGCCACAATTCTGTATGCATTTTTTGGCCTTCGGTTGCTTTACATTGCCTGGAGATCAGATTCAAAATCATCCCAGAAGAAAGAAATGGAGGAGGTAGAAGAAAAACTTGAGTCTGGTCAAGGGAAAACATCCTTCCGCCGTTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGTCATTTATTTTAACCTTTCTAGCTGAGTGGGGAGACCGTAGCCAGATTGCTACAATTGCTTTGGCAACACACAAAAATGCGCTCGGTGTAGCTGTGGGGGCTACTTTGGGACACACTATTTGCACTTCCCTGGCAGTAGTGGGTGGAAGCATGCTAGCATCTAAGATCTCACAAGGGACAGTTGCTACGATTGGAGGCTTACTTTTCCTTTGCTTTTCCTTGTCTTCTTATTTCTATCCTCCTCTATAAGTGATAATGTAGGCAAACCCGATATACATCTTTTATTTTTTTGAAGCGTCGACGCTCTTTTTATTTTTTCTCGAAACAAGCACAATGCTAACTGGTTGACTCCAGACAGATGTTATTCTTTTGTACAATTAGCATATATGTCAAATGTTTCTTCAATTTTACTTGTGAACACATTGATACTTGTTCAAGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73941107|gb|DT524417.1|DT524417 WS02042.C21.1_J12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02042_J12 3 TTTTCTTCTACTTCTTCCATT EST sequence (targeted fragment marked with yellow): CCCGAATATTGGGTAGCTGTCGTTAAACCGGGTAGAATGATTTATGAAATGGGCGGGGTAGCAGAAAATATAGCCAGAAAGGCTATTTCAATAGCAGCGTCCAAAATGCCTATACGAACTCAATTCATTATTTTGAGATAGGAATACAGAACTAAAAAAAAAAGGCCTTTGTTAGGAAAAAATTCGCAAGTTTCTTTTTTTTTTTTTTGTTTTGGACAAACAATATTTCTTTTTTTTGCCCCTTTCCATTGAAATAACAGATTAAAAAAAGAATATGATCCAATCTCAGACCCATTTGAATGTAGCAGATAATAGCGGAGCTCGAGAATTGATGTGTATTCGAATCATAGGAACTAGTAATCGCCGATATGCTCATATCGGCGACATTATTATTGCTGTGATCAAGGAAGCAGTCCCCAATTCACCTCTAGAAAGATCTGAAGTGATCAGAGCTGTAATTGTGCGTACTTCTAAAGAACTCAAACGCGACAACGGTATGATAATACGATATGATGACAACGCTGCAGTTGTAATTGATCAAGAAGGAAATCCAAAGGGAACTCGAATTTTTGGTGCAATCGCTCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAAGTATTATAAAATAAAGCATTATAAGAACATTATAAGATATAAGATGAGATATAAACCATAATTTATAATATTTGATATTTGAACGAAATCAATTAAATTAAAATTAATTAGTAGATTGTGTTTCACGCATATACCTTTAATAAAAATGAATATTTAATAAAAATAAAATAATTAATTCATAAAAAAAAAAAAAAAAAA | |||||||||