mature miRNA: TTTTCTTCTTCTTGTTGCATG species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|218183768|gb|CU622042.1|CU622042 CU622042 STEMS_KZ0AAA Theobroma cacao cDNA clone KZ0AAA15YE12FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGGCCTTTCTTCTTTGGAGAGAAATACGACCAAAGCTTTCTCTCTCTCTTTTCCTAGATGCTTAGAAGGAAATCTCTTCTTCTTGATTGATCGACTCGTTCGTCATCAAGAAGAAGAAGAAGAAGAAGAAAAGCAACAAAAAGGGAGAGAGGAGAGAAAAAGAAGTTTCTGCTCCAGGGATAAAAGGGGAAAAATTTATCACCATGGACTTGACTCCGACTACGACCATAACAGCCGCCGCCATGGCTGTCAACGACATAGAGTCAGCCGTTGATCCCTTCTTGGTTGAGGCTCTTCAGAATCCTCGTCATCGTCTAACTATTCTGCGGATGGAACTTGATATCCAGAGGTTCTTGCAACAATCTGACCAGCATCAGTTTGAGTTCCAACATTTTCCCACTTCCTACCTGAGGCTTGAAGCTAATCAAATTGGTATCAAGAGAAGTCCTGTGAGAAGTGTGGAAGAGAGGAAGGAAGAGTATGACAGGGCTCGAGCACGTATTTTCAGTAGCCCTAGCAGTTCTGATTCTGATGATTCTTCACCTCAGATTTCTGTTGATGGAAAAAATGAATCTCTGATCAGAGATGAGAATGAAAATTGCCGGAACTCTGTTGTTGATCCAGAGAAAAATATTACTGTCCGTGATGGTACATGTCGAGTAGCCATTTTCAGAGACAGAGAGAAGGATCGTACTGACCCAGATTATGACCGGAGTTATCAAAGGTATGTTAGAAGCATTCCATGTAACCAGAGCTTTGGCTTGGCTCCTTACAATATGCAGAAGATTCAGC | |||||||||
gi|296178751|gb|FC072045.1|FC072045 EST00053 Theobroma cacao-Moniliophthora perniciosa pods incompatible interaction library The TTTTCTTCTTCTTGT-TGCATG EST sequence (targeted fragment marked with yellow): GCCATTACGGCCGGGGCCAGCAAACCCTAGAACGGCTCCACCGCTTTTCCCCATCGACAGGGTTTAGAAGGGTTTGAGGCATCAACCAATGGCTCCAAAAGTTGAGAAGAAGGCAGATCCAAAGGCACAGGCCTTGAAGGCTGCGAAAGCAGTGAAACCTGGAGCAACTTTTAAGAAGAAGGCCAAGAAGATCCGAACAAAGGTTACATTCCACAGGCCAAAGACCTTGAAGAAGGATAGGAACCCTAAGTATCCACGCATTAGTGCTCCACCAAGGAACAAGCTTGACCATTATCAGATTCTCAAGTTTCCCCTCACAACTGAGTCAGCGATGAAGAAGATCGAAGACAACAACACTTTGGTTTTCATTGTTGATATTCGTGCAGACAAGAAGAAGATAAAGGATGCTGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTGAACACGTTGATCAGGCCTGATGGTACAAAGAAGGCATACGTTAGGTTGACACCTGATTATGATGCCTTGGACGTAGCAAACAAAATTGG | |||||||||
gi|212166201|gb|CU520352.1|CU520352 CU520352 SEEDNAB_KZ0ABH Theobroma cacao cDNA clone KZ0ABH9YI20FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGCAAAAGTAGTTGTCTTCAAGTACAAGAAGAAGAAAAACTATCGGAGAAATATTGGACATCGACAGCCGAATACGCGGATAAGGATAACAGGCATCACAGGCTACCAAGACTATCCAGCGGTGACACTCAACTCCTGAAATTCCATGTGGAGGATTGGAAGCTACAGAGTCTTCTTTTCTCGCTCTTTCCCATTTTGTATGAATTTCACTTTAAAGTTGGCATCTAGATTGATGTATCCCTTAAGAATTGAGAATTATGAAAAACCAGTTGATCAGAATTTACTGTCAGAACAATGATTAATTAATTTCAATTTCCCAACAAAAAAAAAAAAAA | |||||||||
gi|213165203|gb|CU630283.1|CU630283 CU630283 COTYLEI_KZ0ABB Theobroma cacao cDNA clone KZ0ABB4YE19FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCAGAAGAATAATTCATTCCCGAACTACAAAGAAAATCATATAATTCAAGAAAGAAATATTGATAATTCGTACAGAAAATTCGGGTACAGTATACAACAGTAAAGGAAAATATAGAACTAGAATTGTCGAAAAAGATAGCGTCAAGCACAAGCGCAAGCGTTGTCCACAATCACGGGGTCCCCATCGGCGCACCTGAAGAACAGGGACCCAACAGCGAGTCCCGAAACGACGGCCAAGAAAACGCCGGCGTTGAACGACATGAGGGCCAACATCAGGAGATATCCGATCGCCGAGTTGATTCCAAAAAGCACGGCCGTCGCGAGTTTAGCAAAACGGCGCGATTTGGAAAGGAAAGGTACGGCGGCCCCGGGGGAGGAGGGCTGGGATGGGTTAAAGGAAGCGAGGGTATTGAAACGGAGGCGTCAATCTTCCATGTACTGGGAAAAGGAAGAAAAAAGGAAGCAAGCGACTAGAGTGAGGAGGGGACTCAGCCATGAACCGGTTTTCCAGGAGTCGATGAGGAGAGATACGTCTTTTCCCCAATACAAGGTCAAGGGCATCATCTTCCATCCCCTTGAAGGATTTCCGAAGACCAAACAGAATAAAGATGAAGCAAGAAGAGGAAAGTTCG | |||||||||
gi|218181385|gb|CU611972.1|CU611972 CU611972 STSSHWB1S_KZ0ABI_K Theobroma cacao cDNA clone KZ0ABK2YF14FM1, mRNA sequence TTTTCTTCTTCTTGT-TGCATG EST sequence (targeted fragment marked with yellow): CGCGGGGCCAGCAAACCCTAGAACGGCTCCTCCGCTTTTCCCCATCGACAGGGTTTAGAAGGGTTTGAGGCATCAACCAATGGCTCCAAAAGTTGAGAAGAAGGCAGATCCAAAGGCACAGGCCTTGAAGGCTGCGAAAGCAGTGAAATCTGGAGCAACTTTTAAGAAGAAGGCCAAGAAGATCCGAACAAAGGTTACATTCCACAGGCCAAAGACCTTGAAGAAGGATAGGAACCCTAAGTATCCACGCATAAGTGCTCCACCAAGGAACAAGCTTGACCATTATCAGATTCTCAAGTTTCCCCTCACAACTGAGTCAGCGATGAAGAAGATCGAAGACAACAACACTTTGGTTTTTATTGTTGATATTCGTGCAGACAAGAAGAAGATAAAGGATACTGTCAAGAAGATGTATGATATTCAGGCCAAGAAAGTGAACACGTTGATCAGGCCTGATGGTACCTG | |||||||||
gi|212138491|gb|CU595759.1|CU595759 CU595759 SEED45I_KZ0AAE_F Theobroma cacao cDNA clone KZ0AAF1YE24, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGGAGCATCAAAAGTAGACAATTCATAAGAAGAAAGTTTGTGCAGCTCTAATTCCAACAATCCAATCACTGAAAATTAAACAAAGTTAAAGAAGTAATAGGAAGTACCCAACCGCTTTAGACATCAGGATTGACCCAAAGGATTAAAGAGCTCCCATCTCCAGGAAGGCCTCGACTAGGCACAATCTCGGAGTGCCTTGTTTCCATATCATATATAAGATAGTCCCCTTCCGAATGTCTGAAGAAATAGATGCAGTTACCCTTAAAGGAAGTTTCTAAATTTCCAGTCTTTGCTAGATGGTTACCATTGGGGCTCATAAAGAGTGTACAACCATCCAAATCATTCACTTCATTACATTCTTCCGTAAAAATAACGAACTCGAAAACATCAAAGAGTTTACCATCAGGATCCTCTCTTCTATAGCAAACTAACAAAAGATGACCATTAAGCGAGTTTACTAAGAAAGCACCATCAATATTATGAGTCAAAATGGGCTCAGGGACTGGGATTGTTTCATCTTCTTTTACGGAAATTACGGCAGGTGGAAACTTCCTGCTGGCATAAATGCTACCATTGTTCAGGATAGCATCAGAGATTTTCCAATCGGGAGTCTTGCACAAAAACCAAGCCCAACTTTCGTCGCCTGGTTTGCAGAAGGCTATTGCGCATGTGCTTTCATCATGTGAACCATGAGCAAGAAGAAGAAGAATCATGCAGTCTGAAACTGTAGGACAGCCTGATAGAAGTAATTTACACTGGAAATGAATTGATCTGAACTTATCATGTGGATCAGGAAATGATATTGGTAAAGACGATGAGGGTGGAAGAAGGATTTGAGTTCTTGAGAAAATATTCAAAAGATGCATCCCACATGGGAAACTAAAATCGTCCACGATCAACAGCCAACCATTGCAGGAACAGCAAATACACTTTCCCATAGCTTCAGGTAGGTGAATCTTTCGCGTTTCTTTGTTTAATATATTAAAGAAGACAAGATTATCATCTATATCTTTCTCAGGTTGAATGAAGCATAGAGGGAAAAATCTTCGATATACCTGTAAGGCAGTCGGTAGCCATGATTTACAAACAGCACCACACCGAAGAATGTCGATAGGATCTTTCGCAAAATCAAAGATCAAAAGCAGAATCTCTACGGGAAGATCAGACCAAGAGGACGGTGAAGTCATTGAAATCAATTATATTATCGACACTGAGTCACCTCGAAGCATTTCTATTAAAATAGGGAATAAAGAGAGAAGCGGGCACCTGAAAACCCTAACCCTAGATTACTACCCCCG | |||||||||
gi|212319576|gb|CU531191.1|CU531191 CU531191 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK13YF17FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTGTGAATAAATAAGTATTAAAACCCCCTCAATGGAAGGAGTACCCACCGGAACATTAATAAACGTCCCAAAAGAAGAAGAAAAATAATATAATAAAAAACAACCAACAAAATACCGGGCATTTGAGAATCTTCTTCCCCTACTAACATACACGGATTGGCACAATAAGAAACAGATTTGGATCCCAAACCCCCAATATTACTAAAAAATGGCCATAAAAACTAGCATATGGAATAAAGACCTTAAAACAACATACCAAAACCCAAATGCAGCCAAAAGAGCAAAAAAAATCTGAACACCGCATTGCCTTTTGCCCTTAAATCCAAACCTTTTCATCATCATCCAAACCTCTTTCCCTTCAGCCCTTATTTCCCATCTCTCTTTCCATATTTGACATCCTAAAATCAACCTCCGAACTGATCTAATTCCGGGATTCACTCTTCTTGCCAGTTCCCTCACCTTCCCTCTCCTCCAACAACCTCCCAGCTTCCTCATCAACCTGTGCAGTCTTCTTCTGCGCTTCCTTCGCCCTCAAAGCCTGTAACTTGGAATGATTATAGTAAGCAACACCCAAAAACGCCAGTCCATATC | |||||||||
gi|212157192|gb|CU496245.1|CU496245 CU496245 LESSHMEPNGa_KZ0ACAP Theobroma cacao cDNA clone KZ0ACAP1YE14FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTATTATATTACTCGAAATTGAAAGATTAATTAATAAAATTCATATCTTATCTGAACCATGTTCATCCATAATATATCATGGTGGGTAACTAAAAATGGTATTCCAGTGTACATATTTCTGCTTAAGATCATTTGGAGTAGTACTTTTGACAAACACTTGGTGTAATATCTCCAACATTTAACCGACTCTAAGCATCAAATTACCAACTAGTTTCTCATCTCATAGATTTACATCTCGAAACTACCCATATCAAACTCTAAACAACAAGCAAAGAGAAAAAGAAAATGAAATAATAAG | |||||||||
gi|215527110|gb|CU578601.1|CU578601 CU578601 MONILIOP_KZ0AB Theobroma cacao cDNA clone KZ0AB8YK08FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGGAAGTCAGTGCAAGATTGAGAGAGATCACTGCAATCACACCTGATAGTGCAATCCCAAAACTTTCTCCTCTTTGGTGGGCAGAGCTCGAGATCATGTCTGCCGAAACAAGCTAGGGGGATGAAGTTGAGGTTGTAAGTATGGGACTTGGATGTTTTCTGTCTGCTGCTGGTGGAGAGGCGAAAAGAATAAGTTTGCCCGTAAACCAGCACTGGTTGTATTTACTTCTAGAGAAATGGAAAGTTTGTTGTATATATTTGAGATAGAGAGGAAATCCAGGAAATTTTCCTTGTTTTTGGTTTTCAGTGTGAAAATACATAAAAGAAGAAGAAGAAAAGCATAATTGCAAGCTGCTTGATTTCTATTTGTTCATTGTTACCTTCTCTGTTGCAATGCAGAATCAATTTGTTGCCCAAAAAAAAAAAAAAAA | |||||||||
gi|211992557|gb|CU593020.1|CU593020 CU593020 SEED34I_KZ0AAH Theobroma cacao cDNA clone KZ0AAH1YF10, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTAGAAACATATATGAATAAATAAGTATTAAAACTCCATCAATGGAAGGAGTACCTACAGGAACATTAATAAACGTCCAAAAAGAAGAAGAAAATTAATATAATAAAAAACAACAAACAAAATACAGGGCATTTGAGATTCTTCTTCCTCTACTAACCCG | |||||||||
gi|213639807|gb|CU624997.1|CU624997 CU624997 LEAVES_KZ0ABE Theobroma cacao cDNA clone KZ0ABE2YO24FM2, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTCTCTAAAACTATGATAGATGAGTAAATTGTAAAGAGATTTGCAAAATGCAAAACATTAAGGAAAATGTACATTCAAACGAACAAGGAACAAAATCAACATGGGAATGTCGAGAAGTCTTCACACAGACACTGTGTGCAACCTGAAACTAATAGTTTTACCCTGACTGACAATTGCTAATCATCACCCATTAGTAAAAGAAGATATCGTTAATCGTATGTCATCAATTGAAGAAAGCTAGAAGATTGGGTAAATTGTACTTGTGTTATTGCCTTGCACCCATTCCATAACAGAGCATAAAGATTGAATATACATGGTGACGATCAAGCTCAGCCAAATGAAACAAGAGGGAGAAAGGAGTAACTATCAAACTGTCAAGTCCTTATGAACTTGAAAAGGAAAGTAAAGA | |||||||||
gi|211992982|gb|CU504413.1|CU504413 CU504413 PODMEUPA_KZ0ACAB Theobroma cacao cDNA clone KZ0ACAB1YA02FM1, mRNA sequence TTTTCTTCTTCTT-GTTGCATG EST sequence (targeted fragment marked with yellow): CGGGCTTACATGGGAGGACATTAGTAAACGCATAGGTTTGTCCAGAGAGAGAGTCAGGCAAGTTGGACTTGTCGCGCTAGAGAAACTAAAACATGCAGCGAGGAAGAAGAAAATGGAGGCTATGCTAGTAAAACATTGATTTTGTATGCTTAAACATACACATGGTAAAAAAAGACTGTATATAGATACAGAAAGGAAAATTGTATCTTCGATTTATTTTTCCTATCAAGAGTAACTATAGTTCGACAAACTTCCTGTAACACGAGTTCATCAAACTGATTTAAGAGCCTGTAAGTTGGAGCGAAGAAAATTCTTTTTTATGTATTATATTTATGGAGACAATAACTGGTTGTGCGTCAAAATTTTCATGTAGTTATGATGATAAACAAGTAGTTTCAATGCAGATATTGAGCTGACCTTTCATCAAAAAAAAAAAAAAA | |||||||||
gi|212165517|gb|CU601297.1|CU601297 CU601297 SEEDMAI_KZ0AAG Theobroma cacao cDNA clone KZ0AAG4YO21FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGCCAACATATTACTTTTACCGGATCTCTGACCACCTCATAGCGAAATACCTCAAACTACCATCTTGTCCTATATCAGTATTGGCTTTTCCAAACTATTCTTTGTTAGGATAAATGATTCTTTAGAACCCCAGAAGGGAAAAAAATAATTATTTTTTCTGTCTCAGAAAAGGCGGTTTCAATTCCCATCACCAAATTTATTCATCTGGTGAAATGATTTTGTTTAGGGGAGGTTTTTTCATGTCAACTATCTTGCATGGTTCTCTTGATAGACTAGGGATAGATTGAATTGACTTTTTTAAGAAGCTCCAGTAGTACATATAATTTTAATAATTTTATGGCTCGGAAAGGTAATCAGCAGAAGAATGGGAAAAAAAGGGGTTCAGATGCAGGTTTTCCGGTCTCCGATGCAAAAGGAAGAGGAAAGGCAAGTGAGGTAAAGGTTTTTCCAGGAGAGGAACTACCAAATGGTAACCCTTCAGGCACTCCTTTTACAGAGAGCGTCAGTAAAGGTCACCAGGTTGGGACTGAGAATAACTATAGGCAGAATTCTGAGAGAATTGTGTCGACGGAAAAGCATGGGGATGCTGCAGAGGGTCTTGGCCAATCAATTTCTTCTGGGAGTAGTTCAGGGGATTGCATTGAAAATGCACTTCCAAAGGAAGCTTCAAGTGAAAGGGAACAAAATAAGATATCACCTGACCGGGACTTTCATCCAAAACACAAAAGGGCAGTTTGGGGCTGCTTTCCAAATGGTTTTCACCTCAAAGATGCCATGGAGAATGTAAACTTTTCAAATAATGTGGTGGTAAGAAATGTGAGAGCATCAGCTGTATC | |||||||||
gi|215528885|gb|CU589173.1|CU589173 CU589173 RESSHMEPNGb_KZ0AC Theobroma cacao cDNA clone KZ0AC4YM06FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTACTATATTACTCGAAATTGAAAGATTAATTAATAAAATTCATATCTTATCTGAACCATGTTCATCCATAATATATCATGGTGGGTAGCTAAAAATGGTATTCCAGTGTACATATTTCTGCTTAAGATCATTTGGAGTAGTACTTTTGACAAACACTTGGTGTAATATCTCCAACATTTAACCGACTCTAAGCATCAAATTACCAACTAGTTTCTCATCTCATAGATTTACATCTCGAAACTACCCATATCAAACTCTAAACAACAAGCAAAGAGAAAAAGAAAATGAAATAATAAG | |||||||||
gi|212111077|gb|CU510086.1|CU510086 CU510086 PODWB1S_KZ0ACM Theobroma cacao cDNA clone KZ0ACM2YD19FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGGGTCTGGGAAAAGGATGAGGCCCAAAGGTTTTAGCCTTCTAGGCCTAGTGGTTGGTTTATGGCTCACTTTATCCCTGGCTGCATTTGCTTGATCGAGATGATGATAGATCTGGGTTTAGAATCGATGGCGGCAAAGGCAAAGCAAATGATGCTGATGATGTTGTCTTCTTCCTTTTCTTTTTCTGTTTCATCACTTTCGGCACCGGCATCGGTATCAGCGGTCCGTCATCCCACAAAATCCCGTGCTCTCGTGAGATCTGCTTGTAGAAGCATCTCTACTGATACAAGTAAGAAGAAGAAGAAGAAGAAAGAAAAGGGCAATTGGAATGCAAACGCGTTGGAGAAAGAAAAGAGAAGGACCCGCTCACTCAGGGATTGCGATATTGAGATTGAGGAGAAGGAGGAGGATGATTCTTCTTCTACTTCAGTGATGATGCAGCAGACCCAGACCCAGACCCACGTTCCCGTTATGTTGGGTGAAGTGCTTGATGTCTTCTCTTCAAATTCAAAGCCTCTCTGCTCTTTTGTGGACTGTACTCTTGGAGCTGGTGGTCATGCTTCCGCGATAATCCAGGCCCACCCTGAACTCATGCTTTTCATTGGAATGGATGTGGATCCTCTTGCACTCCATATGGCTTGTTCTCGCATCCGTTCTCTTTCCCACTCTCATCCTCATC | |||||||||
gi|215524353|gb|CU609135.1|CU609135 CU609135 SEFERMI_B_KZ0AAM Theobroma cacao cDNA clone KZ0AAM7YP07FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGGGAATCTTTACTTCCTTTTCGGAAAATTATCTGAAAGAGTAGAAAAGCAGCCGTTCGTTATAGTCGTCGATTTTCTTTTGTCTCTGTTATTAACAATGGGAAGAGGGAAATTCAAGGCTAAGCCCACCGGTCAACGCCACTTCTCTACTCCAGAGGAGCTGCTTGCTGGTACCTCTTCTCGTCCTCGCACATTTAAGCGGCAAGAAGCTGAATACAAAGAAGAAGAAGAAGAAGAATCTGGACAGGAGTCTGGAGAAGAATCTGATGATGAAACTGATCAAAAGCGCAAGGGAACTCAAGGTGTTATTGAGATCAACAATCCTAATCTGGTGAAGCCAAAGAATTTGAAAGCTGGAGATGTTGATACTGGGAAAACGACTGAACTTTCAAGGCGTGAAAGGGAGGAATTAGAAAAGCAGAGAGCCCATGAACGATATATGAGGCTGCAGGAGCAGGGGAAAACAGAACAAGCGAGGAAAGATTTGGAGCGCCTAGCCCTTATACGGCAACAGAGGGAAGAAGCTGCTAGGAAACGAGAAGAAGAGAAGGCTGCCAAGGAGCAGAAGAAGGCCGAAGCTCGAAAATGACTTTCTTACAAAGCATATACAACAAGTTTTTCCTTTAGTGGAAGAAATATGTGCTTTCTACAGTTTAGGCAAATAGATGGTTTATATTTAAAGATTTTTCCTTAAAAAAGTATTGTTCATTATACGACATATA | |||||||||
gi|212149697|gb|CU547880.1|CU547880 CU547880 EPIC23I_KZ0AAS Theobroma cacao cDNA clone KZ0AAS10YM21FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGATCTCTACTGATACAAGTAAGAAGAAGAAGAAGAAGAAAGAAAAGGGCAATTGGAATGCAAAGGCGTTGGAGAAAGAAAAGAGAAGGACCCGTTCACTCAGGGATTGCGATATTGAGATTGAGGAGAAGGAGGAGGATGATTCTTCTTCTACTTCAGTGATGATGCAGCAGACCCAGACCCAGACCCACGTTCCCGTTATGTTGGGTGAAGTGCTTGATGTCTTCTCTTCAAATTCAAAGCCTCTCTGCTCTTTTGTGGACTGTACTCTTGGAGCTGGTGGTCATGCTTCCGCGATAATCCAGGCCCACCCTGAACTCAAGCTTTTCATTGGAATGGATGTGGATCCTCTTGCACTCCATATGGCTTGTTCTCGCATCCGTTCTCTTTCCCACTCTCATCCTCATCCTCACTTCCAAGCTTTCACATTTCTGGACAATTTCAGACACATCAAATCCCTTCTCAGGCAGGTTGTCCACCCCGACATCTTCTCTTCGGGAGTCGATGGCATCTTAATGGACTTAGGAATGTCATCCATGCAGGTCAACAATCCCGAGCGAGGTTTCAGTGTGCTTGCTAATGGACCTCTTGATATGCGCATGGATCCTCAGGCTAGTCTGAAAGCAGAAGACATATTAAATTCTTGGCCAGACATTGAAGTGGGAAGAATCCTTCGGGATTATGGAGAAGAAAGCAATTGGTGGTTGCTTCAAAATAAGATAATTCAGGCCCGCCTA | |||||||||
gi|213644390|gb|CU569244.1|CU569244 CU569244 MIRIDUFS_KZ0ACAD Theobroma cacao cDNA clone KZ0ACAD7YF02FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGAGATGAAAAACATAGCAGCAGTGAGTCTGGTTGGACCATGTATATTGGCTCCTCCACCAGAGAAAACGATCGCTACAATTACATTGATGAGTACGATTGTGATACTCATGAACAGGAAGAAGACAACCACAAAAATCATCGCGGCAACTATGACGGTAACAGCCACAATGATGATGAGAGTGATGACTCAATGGCTTCAGATGCCTCTTCTGGGCCGAGTCATCACAAACTTCCATGCAGCAGTGAGCAAAATCTGGGGATGGATCGTCACAAGCATGAAATGCTTAAGTCCAGCCGCAGATGAAGGAAATGTATATTGGCTCACTTGAGCAGCTTCTGAAGCATCCTGTTTCAAAACCTCTGGTCG | |||||||||
gi|212120069|gb|CU511417.1|CU511417 CU511417 PODWB2S_KZ0ACN Theobroma cacao cDNA clone KZ0ACN1YA01FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGGGAACAAAAACCAAACCCGGCGGAAAAAGAAAAACAAAGTTGAACCCAACTCCCAAAGAAAAGCAAAAAAAGGAATCCAAAAATCCCAAATCAAAAAAAGAGCCAAGCAAAAAGAAAAAGAAAGGGCCAAAGGGTGAGGGGGCGACACTACGAACTTTTGAAGTGAGTGGGACACTCCTTTAATTCCCCGCAAAAAACCTTTGGGAGAAACCCCC | |||||||||
gi|212314278|gb|CU619109.1|CU619109 CU619109 STEMS_KZ0AAA Theobroma cacao cDNA clone KZ0AAA13YF03FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTGTTGAAAATGTCATCCAAATTGGACATTAAAATTGTAGGAAGCTACACCTACACGGGACATTACTAGTATATCAATCACGAAAATACGACAAGTTGCATCTTAAATTTGCCTTTACACTTGGTAAATGATTCTGTGAAACAAGAACAAGAAAAAAGTTTGCATATTAAAAGTGTCCTTGATAGCCAAAGTTGAAATCAGCACACGTGGTACCCTTTAGCAAAACAAAAGATGTGAAGCCTAATCTGTTGGAGTCGAGATCAAACTGCAGCAAATTATCCTCCATCTGATGCCCACCAATCACCACGGACGCCCTCGGGTTGACCCCACCATCCACAAATCCCAAGCACCAAACATCCCCACCATCTCCCGCAATCTGTACCATCGAATTCGACCCAAACACCCTCCAAAACACATCATCGCTTTGCATCACCAGATCTACGGTCGGCACGCCCGGTCCCACGCGCGTGACGATTATATCAGCCGCGGAAAAACACACGCTGAATGGTTTCACCGCGTTGGTTACCGTGAGATTCAATGCAGAGGATTCATTCACGAACGCGTCGGTTAGAGCATTGTAAATAGAAATCTCTAAAACGGTGTAAGTTGTACTCGTGCTTAACTTTGTCCCAACGAATCCGTTCTTATCAACGTTTAAGGA | |||||||||
gi|215532963|gb|CU603527.1|CU603527 CU603527 SEFERMI_A_KZ0AAR Theobroma cacao cDNA clone KZ0AAR1YN20, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CTACGCGGGGAAATAGTAATATAATCAGCAAAATCTGCCAGGTGAAGCAAATCCAGTAACCCTTTTTTGGGAGTGTTTTAAGGTTTCACAAGGGAAAAGAAGAAGAAAAGTTTTCTGATGGGGCGTTGGATGAAGCCAGAGGTGTACCCCCTACTAGGTGCCATGACCTTTGTAACAAGCATGTGCATCTTTCAGCTTACAAGGAATGTTTTCCTAAATCCTGCTGTCAGAATCAACAAAGCTGACCGTAGCAAGGCAGTGCTAGAAAACTACGAGGAAGGAGAAAAATATGCTGAACATGGACTACGCAAGTTCCTCCGAACCCGCCCGCCCGAAGTCATGCCTGCCATTAACCATTTCTTCTCCGAAGATAAATGATCTATTCAAACTAAAACCATCTCAAGCTTGCAGAAATTTGTTTATGGAAAAAAGAAATGACAGTCTTCAGTTTTCCTTTCTTTTTGGGGTTTGGTTTACACAGCATTAATTGATGCAATTAAGGATTTTCTTTATTGTTATGTAAATAAAATAACAGACATAGTTATTTGATTTCCAAAAAAAAAAAAAAAA | |||||||||
gi|212096530|gb|CU539897.1|CU539897 CU539897 CORTINS_KZ0AAV Theobroma cacao cDNA clone KZ0AAV13YE18FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGGAGTCTTAGGGACCTTAATTAGCAAAGGTCCTCTGGATTGGAGCGTTATAATGGAGGATCCTTCACCGAAGGACCAGAAAAACCTCTCTATAAATTCCAACCTAGGAAGACTTCAATCTTCAACTGAACTCGTCATCCACTCAGTGAAAGCTTGTTGCTATCAAAGTTTTCTTCTAAAACATCAAGATTTACTGAGTCCTACTCTTCACCCTCTTACGCTCTGTTTCTCAAGTCTCAAACACATCTTCGCAAACCGTATTTTTCTGTCATTTCTCTTTGAAAATGAGTGCTCTATATGATGAGGATGTTGCTTCAGGGTGCAATGGAGCACTAGTAGTCAACGGCATGGTCGTCTATGACGATCCTCAACCACTAACAATACTGCCTATCACGGCGCAAGATCCTCCTATGGCACAAGAAGAAGAAGAAGTAGCAGTCCAAGCTCCAATTGTTTCGCAATACAATGACCAAATCCGACCTCTGCTTGATGCCATTGACAGGCTCAGGCTTCTTATGGTCATGAAAGAAGGCATACAACTCCCCACAATTGTTGTAGTTGGAGACCAATCATCAGGGAAGTCCAGTGTTCTTGAATCACTTGCTGGTATTAGTCTTCCTCGAAGCCAGGGTATTTGTACTAGAGTACCCCTCATAATGAGGCTG | |||||||||
gi|215530406|gb|CU589012.1|CU589012 CU589012 RESSHMEPNGb_KZ0AC Theobroma cacao cDNA clone KZ0AC2YK23FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTGCTATATTACTCGAAATTGAAAGATTAATTAATAAAATTCATATCTTATCTGAACCATGTTCATCCATAATATATCATGGTGGGTAGCTAAAAATGGTATTCCAGTGTACATATTTCTGCTTAAGATCATTTGGAGTAGTACTTTTGACAAACACTTGGTGTAATATCTCCCACATTTAACCGACTCTAAGCATCAAATTACCAACTAGTTTCTCATCTCATAAATTTACATCTCGAAACTACCCATATCAAACTCTAAACAACAAGCAAAGAGAAAAAGAAAATGAAATAATAAG | |||||||||
gi|211971560|gb|CU474058.1|CU474058 CU474058 CHERELS_KZ0AAC Theobroma cacao cDNA clone KZ0AAC9YL23FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): GGAGAGAGAAAAAAGAGGGAAAGATAAAAAGGCCCCAGGATAACATGGGTAAGATAGTGAAGAAGAAGAAGAAGAAGAAAGGGAGGCCTTCTCTTTTGGATCTCCAAAAACGCACCCTTAGAGGAACAACAACAAGAGCAGCAACAACAGAATCAACTGAGTAGAAAAAGAAATGTTTCTGCCCCCCAAATTACTCCTAATTACGAGTCTGCCACTGCCACTCCGCTCCGTCGATCCAACCGCCGGAGTCACAATCATTCGCCGGAGGATAACGATGAGGAAGACGACGATGACGAATAAGAAGAAGAAGACGAAGAAGGAGAAGAATTGGCCGGGAAGAAGCGACGCGAGAAGAAGCTGAAGCTCGTCCTTAAGTTGCCTTCCTCGCAGCAAAAATCGCCGGTTAATTCAGAATCCCGCGGCTCCGGTTCGAATCTCGAGGAGAGTAACGCGGGTTCGAGCCACGAGAAGAGGAAAATCAATTCGATCGGGGATGGATCTGCGGTTGCTGATTCCAAAAAAAAAGAAAAAAA | |||||||||
gi|296178841|gb|FC072135.1|FC072135 EST00143 Theobroma cacao-Moniliophthora perniciosa pods incompatible interaction library The TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): GGGGGGTCTCTTTTTCCAAAGGATCCAACAACTCTACGGGGAATCAAGCTTCTCGGTCCGATCATTTGCCAGATCAAAGCAAATCACACAAGTTTTGTCTACAATGGGGTTTCTTCCTTTTTCATCACTTCGGTCCATCACTCAGTAAAACTGGTACAATAGCTATATAGGTAGCTTTCCTTTTGCACATGGACTCTCTACCTTTTATATTCTAGGTATGGTTTCGAGACCATTTATGAAAGAAGAAGAAGAAGATGCTGATTGTATGTGCTTAAATTTTTTTTTCTTTTTGTGTTCGTTATTTTCTTTCTAGATCTCTAAATTTTCCCAAACATGTTTCCGTGGTCTTCTCTTGATTTTTGTTTGTTTGGTGCAATGATATTATGATGGAAGGAACTTGTTGTTTGATATACAATATAATTATTCTTCATG | |||||||||
gi|213634109|gb|CU573297.1|CU573297 CU573297 HYPO23I_KZ0AAP Theobroma cacao cDNA clone KZ0AAP3YO12FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGAGGGCGATACCGTGCAATTGGTTGGCTTCGGTTCCTTCTCGACCGGCAAGCGTGCTGCCCGCACCGGCCGTAACCCGCAAACCGGCGAAGAGATCAAGATCGCTGCTGCGACCACCGTCAAGTTCTCGGCTGGCAAGGCTTTCAAGGAAGCCGTGAACAAGAAGAAGAAATAATTCCCGAATTTGAATGCCATGAACCTCGTTCATGGCATTCAAATTTAAGCCGGTCCGCAAGGACCGGTGTCTGCCGTACCGCACCGCAAAAAAAAAAAAAAAA | |||||||||
gi|212154017|gb|CU548109.1|CU548109 CU548109 EPIC23I_KZ0AAS Theobroma cacao cDNA clone KZ0AAS1YJ12, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGCATAAATAAGTATTAAAACTCCATCAATGGAAGGAGTACCTACAGGAACATTAATAAACGTCCAAAAAGAAGAAGAAAAATAATATAATAAAAAACAACAAACAAAATACAGGGCATTTGAGATTCTTCTTCCTCTACTAACATACACGGATTGGCACAATAAGAAACAGATTTGGATCCCAAACCCCTAATATTACTAAGAAATGGCCATAATAACTAGCATATGGAATAGAGACCTTAAAACAACATACCAAAACCCAAATGCAGCCAAAAGAGCAAAAGAAATCTGATCACCGCATTGCCTTTTGCCCTTAAATCCAAACCTTTTCATCATCCCCG | |||||||||
gi|26054792|gb|CA797706.1|CA797706 Cac_BL_4792 Cac_BL (Bean and Leaf from Amelonardo type Cacao) Theobroma cacao cDNA clone Cac_ TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): AAGAAGAAGAAATAGAAAGAACAATAAGAGAATAAGAAGAAGAAAGAACATAAATAAAATAGAAAAAGAAAGAACAATAAAGAAGAAGAATAAAGAATAAAGAAACAATAAAGAACAAACAAATAAAGAAGAAACAATAAGAAACATAAAGAAAGAAGAAAAGAAAAGAAACAATAAATAAAGAAGAATAAAGAGAAAGAAGAACAATAATAATAACAGCGAGTAAATCCCCTTCTGGTGGGAGAGAAATGGGGTATAATAACATAACATCACATAACACAAAAAGAAATAGAACCACACATAACAACATAGAAGAAGAAGAAGAAAAAGAACACCCATAACAATAAGAAACCCATAAAAAATAAACAAGAAACAACCCGAAGAAAAGAAACCCATAAAAAAACAAAAAGAAAATAACCAATAACCCATAAGAAGAAATTTGAAATTAACCATACCCATAACGAAATCAATAATAACAATAACAAAAGAACCAAAGAAACTATAACGACGAACCCGAAGAAGAAATTCCCGTTATACCCCTTGGAATTTTTATTACCCGAAGAAGAAATAAATAAGAAGAAACAAGAAACCATAAATAGAAATAAAATAGGGAAGGGTTCGAAATTTTCCCGAAATTCGGGAGGAAATTGAGGCAGCACCCAAACCCAATTGAAACCCCTTCGGAAGGACGAACCCAAAAAGAAAAAGAACCATAGAAATAACCACCGAAATACCGGAGTTCGTGGGTTGTGTTTTTAGACCCTTTTTATTACCCAAAATTCCCTTACCCTTTGAATTTCCCGAGAGTTGGGATTAGTAAGAGGCCCCATAATAGCTTAGTTACCCCGCCGGAGATTTTTTCCGGAAATTCTTAGAAAGAAAGAAGGATTTTTTCATCGGGAGTTTCCCCCTTAGGGAGAAAGGGGGGGTTTCTTTG | |||||||||
gi|212338078|gb|CU526099.1|CU526099 CU526099 WILTP_KZ0ACL Theobroma cacao cDNA clone KZ0ACL4YI23FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGGATCGTCTACTAGTGAATCTCAGCAGTCAGGGTTGCCGCCTTGAAGCAAGAAGAAGAGGAAGCAAACACCCATTTCTGCTTACAAACTAAGAAGGATTAACCTAGGAGAAACTTGCTTTTGCCCTGGTTGTTTGCATGGAACCAAAGCTAGTAGTGCACAATGGTGGTTGCCACTGCAGGAAAGTAAGATGGCATGTCCTAGCACCTACTAGTGTTGTTGCTTGGAAATGCAACTGTTCCGACTGCTCCATGAGGGGAAACACTCACTTCGTAGTACCGCATGAAAGGTTTGAGCTGCTGGGAGATTCCAAAGAGTACCTTACTACGTACACTTTTGGAACTCACACAGCAAAACATACATTTTGTAAGGTTTGTGGAATAACTTCATTCTATACCCCACGATCAAACCCAGATGGCATTGCAGTGGCATTCAGATGTTTAGACCCTGGAACGCTCTCCGATGTTGAGATTCGGCATTATGATGGGAAGAACTGGG | |||||||||
gi|212130791|gb|CU506700.1|CU506700 CU506700 PODMEUPA_KZ0ACAB Theobroma cacao cDNA clone KZ0ACAB1YP24FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGGGGACACAATTGTGAGCCAAATTAAATCAGTACGGCCAACCAAAAAGAAGAAGAAAGGGCATAACTCTCCAGAATTCACCAACAGCAATGGCTACTGATACCGTAGAGGTTTTGCCTCCGCCTTTGGATGCTACTGCTGAGCAACCCCCTCTCTTTGATGGAACTACCAGGTTGTATACTTGTTATACTTGCCCTTTTGCACAGCGTGTGTGGATCACCAGGAATTATAAGGGGCTGCAAGACAAGATTAAATTGGTTCCTTTGATCCTTCAAAACAGACCTGCTTGGTACAAGGAAAAAGTTTACCCTGAAAACAAGGTGCCCGCCTTGGAACATAATGGGAAAATCATTGGGGAGAGTCTTGATCTAATTAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTTTACCTGATGATCCTGAGAAAAAGAAATTCTTTGAGGAGTTGTTATCATATCTGGACACCTTTGTACGGACAGTGTTTACTTCATTTAGAGGGGACCCGGC | |||||||||
gi|212321969|gb|CU533423.1|CU533423 CU533423 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK8YL12FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): CGGGGAGGACATCAAGGTATGGGAATGTTTCTGAATGGAATACTGTGGCCAATTCAGTATGAAAAAATTGGACTTGGACTCTCGGGGCATAGAGTTATATAGTGAATTTTTGTCAATTTGGATTAGAATTCGCTTTTGCCGGTTTGTGTTTAGTTATGTTGTAAAACGATGACTTAGGGTTTTATGCGTTCCATGATTCTTTCTTGATGATGTGTTTGTTATTTTTATTAAACTAAATAGTCAAAACCAAATGTGTAATTATTTTGGTTGGTTTTGGAGAATTTGAAGAATAATAATCAAATTGTAAGAAGAAGAAGAAAAACGATTTTCGGAACACAAGTTCGAGATATTTTTTATGGGTAATAAGTTGGTAAGGAGGAAGCAAGTGGTGGACGAGAGGTATACACGCCCACAAGGGTTGTACACTCATAATGATGTGGACATTAAGAAGCTAAGAAAGCTGATACTTGAATCAAAGCTTGCACCATGTTATCCCGGGGATGAAGAGTGCTGTTGTGATCTTGAAGAATGCCCAATTTGCTTCTTGTATTATCCGAGTCTCAACAGATCAAGATGTTGTACGAAAAGGATCTGCACAGAGTGTTTTCTGCAGATGAAGAATCCTAATTCAACCCGTCCTACCCAGTGTCCTTTCTGCAAAACCTCAAACTATGCTGTGGAGTATCGAGGTGTG | |||||||||
gi|215517373|gb|CU601727.1|CU601727 CU601727 SEEDMAI_KZ0AAG Theobroma cacao cDNA clone KZ0AAG7YJ22FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTAGTAGTAAAATTTCTTATGCTTATTATTACCCAAAATAAGAAATCCATTATTCTTACACCGTGCTTCGTATTAAGTATCAAGAAGCAGAACAAACTCATTCTGTTGAAAATGAGGGACAAGCAGGAATGAAATTCATAAAACAAGATGAAGAAAGATGAAAAAACCCATGGCTAAAAGGCAGCTGAAGAGGGGACAAAATCCAAGGGACCATAAGGCTCAAAAAGTTCAGCAAAGAATCCCTTCTTCCGCCTGGGGTTCCATCCCATATCTTTGCAGAGTTGATCATTATACCAAACATGAAGAGCCCCAATGCGTTTCCTACGAAAGCATTCACCCGAGTATCGTTTCAGGAATTCCTCCCATTTTGTCACATCTTTTTCCATCTCTTTGATGCTAGGCAGCTTGAATGTGCCATCAAGAAGTTCTGCTAGCCATCGGCATCTTATCTCTGAGGTGTACAAATTCGACACACTCTCAGAGAATCCGATCACAGCTAGTTGGGGTATATGAGGTTGAATGCACTCCCTGTAGA | |||||||||
gi|212124174|gb|CU499783.1|CU499783 CU499783 LEAVPAGU_KZ0ACQ Theobroma cacao cDNA clone KZ0ACQ1YD22FM1, mRNA sequence TTTTCTTCTTCTTGTTGCATG |