| mature miRNA: TTTTGCAGGCGGACCTCTTA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|29630449|gb|CB635458.1|CB635458 OSIIEb15N24.r OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb15N24 3', mRNA sequence TTTTGCAGGCGGACCTCTTA EST sequence (targeted fragment marked with yellow): TATGTGTTCCGCCTGCGAAAATAGCGCTGGATAGTCATCTTCCTCCCCAAGCTCTATTCATTCTATCCGGTGTTTCTCTCTCCTAAAGCTCAGAGAAGATGACCCCAAGAAGGCTGCTGAACTAGCCAGAAAAAAATACTTTCCAATTGATGGCTGCCAGGAAAAATACCAACATGGGAAAGCAATATGGCTGGATTTTGCACTTGATGACGGTCCATGGGAGATGACAAGGTTATATAAATGGTACATGGATGCCAGCAAGAAAGGCCTAAGTCATATAACAATTCGATCACCGCATGATGCTTTCGCCGGCGACGGTTACTTCTGGCTAGATTTTGAAGATCTCCACGCCATATATCGTCAGGAAAAGATTGACGTCAACTATATCGGTGCTTAGTGCATGAATGCATGGATGCTAAGAAGGAAAAAGAACCTATCGGATTCTTGTATCCAACTAGGATCTGTCAAACACAGCATGCCGTGAGGCTATCACCAAGGTCGGAGCAGTTGAAAGACAAGACTCCCGAATAGATAGCTGAATATAAGAAGGGCTTGCACAAGCAGAAAATAATTACTGTTGCACAGTATATTGGACGAGCCTTCTTGCACTTTCAAAATAAGAAAGTCGTCCTAGCCGTTTATAATTTTAAGTCTGGTAAATTTATCTTCTACATATGTGTCTTGTTTTATCCGTGACTAAAGGCACTGTCATTAATATATAGCGATCATTACATCAAATAAAGGAAAAAAAAACTCGAGGGGGGGCCCGGTACCCAGCTTTTGTC | |||||||||
gi|29630448|gb|CB635457.1|CB635457 OSIIEb15N24.f OSIIEb Oryza sativa Indica Group cDNA clone OSIIEb15N24 5', mRNA sequence TTTTGCAGGCGGACCTCTTA EST sequence (targeted fragment marked with yellow): ACACAGTTTTAATTCTTTCCCGATAGCATATCAGTATGAAGAGTGCCCTGGTAATCCTGCTGACGACGACGGCGCTTGCTACCGGCGTCCTCGCAGCGTATAATGACCCGCTCCAGCCAGACCACCTCCTACCTTCGCATGGCATGCCAGGTGTGCCATACATGCCAGGTGTGCCATACACGAGGTCTAGTAATGGTGATCCTTCCATTCGAGCTTCTTCCCCGTACCATCGTCCGTCACCTCCTTGTTCCCATTTGCCATGTCCTTGAAGTGATGCGGAGATACGCGATGGAGCAAAAACCCCACCAGCGAAAACTATAACCGGGAAGGAGTTGGGCGTCCACTTGCGAAGATCGGTTATCGCAAGCGGCGCCTGCGATAATCATATTCACATACGGCCTCCTCCCGCAATAATCTCAGGAGAGTGTCGCCGCCTGCGAAGATTGGTTTGGGCAGGCGCCCGTTATGTGTTCCGCCTGCGAAAATAGCGCTGGATAGTCATCTTCCTCCCCAAGCTCTATTCATTCTATCCGGTGTTTCTCTCTCCTAAAGCTCAGAGAAGATGACCCCAAGAAGGCTGCTGAACTAGCCAGAAAAAAATACTTTCCAATTGATGGCTGCCAGGAAAAATACCAACATGGGAAAGCAATATGGCTGGATTTTGCACTTGATGACGGTCCATGGGAGATGACAAGGTTATATAAATGGTACATGGATGCCAGCAAGAAAGGCCTAAGTCATATAACAATTCGATCACCGCATGATGCTTTCGCCGGCGACGGTTACTTCTGGCTAG | |||||||||
gi|33817664|gb|CF334665.1|CF334665 JMT--04-A18.g1 AtJMT-overexpressing transgenic rice plasmid cDNA library (JMT) Oryza sativa J TTTTGCAGGCGGACCTCTTA EST sequence (targeted fragment marked with yellow): GGACACTGACATGGACTAAAGGAGTAGAAAAGAACCCCCAACCTAACCCTGCAGCCGCGATCGCTGGCAGCGAAAGAGAGGAGTGGGCATGGCTTCGTTTGCGCGATCTTTCTTGGGCTGCGGCGGCAAGGCAGGACGCGCGGGCGCTCGCCGTCCCCGCGCCCTTTCTTCCGAGGTCCGCGGCGGCGATCTCAGCCAGCGCAAGCCAGCTCCTGGCGTTCACAAGGCAGGGAGCGGATGCGTCCACAAGGATCCGTATCCTCCCCTATCTGAGGCGGCCACCAAGCTAAATGCACTGCTGGATGAAATTAAGGGGAAGAAGCTCAATTCCGTGCCATTGGTAATGGTGGGCAAAACCATTTCAAACTTTGAAATTGTTCGGAGAGAGGTTCACTTCAAAAACATCGGTCGATCATGGGCCATTACCGCCGTTCTTCTTGGTGGCTACTTCACTGGCTATTGTATGGAAGAGGAGAAAACCAGGAAAAAAAGGCAATCTTTAGTGAATTAAGAAGCCCGCCTGTAGAGGACATATGTAAGGTGTCCCATGTGTGCAAATGTTGGAAGTCTCTATCTAATCTAGATCTCCCTTTGGATATGTTAACTGCACTGNTTTGTTTCCATTCAACTATGCTGATATCTGTTACATTGTGATCTGGAGGCAGCATTAGAGTTGTACATTTTTATTAACTACTTGTTATACTTTTGGCCTACGCATTTC | |||||||||
gi|163923621|gb|EG711538.1|EG711538 Os5MPREST3046 Rice young panicles Oryza sativa Japonica Group cDNA clone 5MPR-H4A04S, mRNA s TTTTGCAGGCGGACCTCTTA EST sequence (targeted fragment marked with yellow): CCTAAAAACTATTTCCCGTCCGCATCGCTCCCATCCCAGGGGCGACACGGACGGCGCCTCATTCTCCTCCGCCTCAGTCCTTGCGGCCGGCCGGCTTACCCTCCCTCCTCCTCCCCTTTGCCTTGCCGCCGCCTAAGCGGCTCGTCTGCAAAGCCAGCCGGCCGCAAGGACTGCGGCGGCGGGGCCCTCTCTCTCCCCAACGAGGAAGCCAGCGCGCTGGGACACCGGGGCTGCTCGGTAGCGGCGGTTCACGGCGCCGGAGGCGGCGGCCGGGGGGTTGGTGCGGCGGATCCGGCGACGCCGGAGGTGGATCTGCCTCCCCCGGTGGTGGATCTGGCCTCCCCG | |||||||||
gi|44668292|gb|CR281726.1|CR281726 CR281726 Oryza sativa library (Han B) Oryza sativa cDNA clone y623c12p3, mRNA sequence TTTTGCAGGCGGACCTCTTA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTGGCCCCAAATCAATGACAAGCAAAGCTCAGCTCCTTCATTAACTCAGATTGATTTTTAATACAAAGCCAAAGAGACTGACACGAACGCATAACATATATTTGCCGCTATCGATCGCCAGCTGATTATACCAGCGAGAGAAAGCGTACGTACATACGCACGTAGGCGCAGGGAAGAGAGGAAAAAAAAAAGACAAATACGCACGTACGTATAGTACACGGTACATGTATACACGTATAGCTAGCTCAAGCTCTCTCTTCTTCTTCAAGCAGAGCGGGCCCACGTACACACAGCACCACCACACGTACACAGACACCGTACACATTACATTTCGACTTGGTAGAGTCGTCGATCGTACAAACAATGGCTTCCCGCGCTCGTGCACGTGCGTACGTACGTACGCGTGCAGTACATACATACATATGTATATACGTATACAGTATAGCAACACGGAGTGGGTCCATGGCGTCCGGACGATTAGACGTTGTCGAACTCGTCGGCGGACATCGACTGGCTCTGACAGCGGCGGAACTTGACGGAAGAGAGATCTGGGGGGCAGCACCCCCGCGGAGAGAGGAGCCTCCCAAAGAGGATGAGGGCAAACCCAGGCCGGAAAAGGGCGACCACGGCAAGAAGGAAGAACAAGACGAGAAAAGAGGACCGCCGGCAAAGAACCGAGAAAAAGCGGCAGAGGGCAACACAGAAAAAGACACGAAAGAACAACACAAGAGGA | |||||||||
gi|88463176|gb|CI524486.1|CI524486 CI524486 Oryza sativa (japonica cultivar-group) after pollination embryo Oryza sativa Japonic TTTTGCAGGCGGACCTCTTA EST sequence (targeted fragment marked with yellow): GAGGAAACCAATATAATACTCATATTTAGCAATATAATTAACGTACGCAGTTCGAGAACCCATAGCACAATCTACCCCCATGCATTGCAGGCTAGGTAAAGGTAAAGCAAATCGCACAAAATAAACCGAACCGACCCAACAACGCGATGTTCAAAAGGTAAAACAGATAAGCTAGCTCCAATGCTCCATGGTGTACTTTCGCCTGCGAAGGATTTGACGAGGGGAAAAAAAAGGAAACCNGCTTAGTCGACCTCCTCCATCTTGNTCTCGCCGGCGTCGTCCTCGAGCGGCGGNATGTNGGTGTCGGCCTCCGCCGTNTCGTCCTCGTCGATGCTCAGGCCGAGCTTGACCATGCGGTGGATCCTGNTGCCGAAGGTGTTGGGGTCGTCGAGGCTGAAGCCGGAGGTGAGGAGGGCCGCCTCCAAAAGGA | |||||||||
gi|87016087|gb|CI281830.1|CI281830 CI281830 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TTTTGCAGGCGGACCTCTTA EST sequence (targeted fragment marked with yellow): GATGCCGTCTGCGCAAGCGGATAGAGGCTCCGCCTGCAAAAATCAACGACTTTCGCAGGCCTTAGCCTACCGGCGAAATATTTACTAGCTGCCTGCAAAAACTTGTTTTCTAGTAGTGACCATCACTAATACTAGTATCATTTAAAGTAGTGTACACAATTAAGTTCACGGATTCACCATGGTGGAGGAGCTCGACGATGGCGTCCGGCATGGGAGCGCCGGGCATGGCGGCACGCCAGAACGCCTCCGCCGCCGCCGCCGGCGACGTCCGAGCAGCAAAGGCAGTCATCTGCCGGCCAGGTTGAACCACCTGATCAAGGACCAATTCAAACAGGCAACGTTTACTGCATCAGCTAAACATGTCTGCACAATCCAGAAGTTGAAATGCAAGTGATGATGAGATGATATGCGTCAAGTTAATTTCAGCCATGGCTGGGATATCCTCTGCACCATGAGAGCCATGGCGATGGCGATGGCGACGAGGGACGCCATGGGAGGAGCTGGAAGGAGAAGATGGAGGCCGTTCGCC | |||||||||