| mature miRNA: TTTTGGGACAGAGGGAGTAGT species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|143800401|gb|CJ966322.1|CJ966322 CJ966322 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul40m2 TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): TNCCCTCAAACGTAGCAATTCCATTCTATCCAGCTGCTGCTGCTGCCTACTGGGGCTGCATGGTTCCGGGAGCCTGGAACACTCCATGGCAGCCGCAGCCGCAGCCACAGTCTCAGTGTCAATCTAACTCACCACCTAGTGCTGCTTCTCCGGTATCGACAATGTCCAGTTGCTTCCAATCCCGAAAGCATCCTAGAGATGGTGATGAGGAAAGAGATACCAAGGGTAATGGCAAGGTGTGGGTGCCCAAGACGATCCGGATCGATGACGTAGATGAGGTGGCCAGGAGTTCTATCTGGTCACTTATTGGGATCAAGGGCGACAAGGTGGAGAAGGATGATGGCAAAGGCTGTAAGCTTGCAAGGGTTTTTGATCCAAAGGATGAGGCAAAGACGTCAAGCCACAGAGGTAACAATAGCTTGCCATTCTTGAAGGGGAACCCAGCTGCACTGTCGCGCTCAGTGAACTTCCAAGAGAGATCTTGAGCACCATCTGGAAATTCTTCATGCTGCCTTCTGCTACTATAAAACCATGTAGCATGATACAGCTGAAATTTTGTACATTAGATAATTGTATACTACTCCCTCTGTCCCATAATATAAGAGTGTTTTTTAGACTAGTGTACTGTCAAAAACGTTCTTATATTATGGGACGGAGGGAGTACTAGATAAGAGACATGGAGTGTTCAACATAGCTATAATCAGATCC | |||||||||
gi|222362543|gb|GH724928.1|GH724928 F1.001H22R010702 F1 Triticum aestivum cDNA clone F1001H22, mRNA sequence TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): GTATTTTTTTTTTTTTTATAATGCAGGGTAGATGTATTACATCATGTATTAACCACAAATCATGAAATCAATACTCCCTCTGTCCGAAAAAGCTTGTCCCAAGCTTGTTTCTCAAATGGATATATCTAGCACTAACTTGGTGCTAGATACATCCATTCGAGCGACAAGCTTTTCCGGACAGAGGGAGTACCAAAGAACCAACTAATGGCATCACCTCTGTACTAACAATCAAGATTTAGTATCACAGGAGTGTTTACTTGCAGATCAGGAGTATCACAATTACAACTAAAGAGGCATTGTCCTCACTGCTGTCCCTGAGCCCTTCACAAGGAGAGTTCCAAGCCTCGAAACTTCTACCTTAAGCTCTACACATGACCCTAAGTAACGAAGCCCGTCCCTCAGCAAGGATCATGTCGCGAGTGAAATCAACATGCTATAACCCCTCAACCTGGCACAGGTCCAGAAATAACGCCCAGTCTCGCGAATCGTGAACGTACAAACCGACAAGGCTCACCAATAATACGAGCGCCCACGAGGACATATACACCACGCGAGACAGCGTTGGCCAACCAAACCTGCGCCGAGAAGGGAGCACAACCAGGCTGGAACACGAGAACCGAGCGAAACACGG | |||||||||
gi|143794852|gb|CJ960780.1|CJ960780 CJ960780 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul24d2 TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): CAGATCCAGATTCTGTATCCTGACCCTGCTCCTGCCTGCGATCCCCAACCCCCAATCCAAGGACCAGACCAAGAGCAACAGGGAAATCATGAGCGCCATGGTCGCGTCGTCGCTTAACCCGGAGGCCCCGCTCTTCATCCCGGCAGCGTTACAGCAGGTGGAGGACTTCTCACCGCAGTGGTGGGACCTCGTCAAGTCCAGCGCCTGGTTTCGCGACCACTGGTACCACCAGCACCAGCAGCTCGACGATATGGCCGACTCCCTCATCGCCTTCGAGGCCGAGGACGCCATCGCCGTCGAGGCTTCGCAGCCGCAGCCGCAGCCGCCAGCGGCACTCAAGATTGACGGGGTGCTCAAGGCACTGAGCCTGTCGTCCCCAAGCCCAAAGGGCGGCGACGCCCTGCGTGGCTTCTCGGAGAAGCCTAGGTACACCGAGAAGCCCACCAAGTACGCCGGCAGCCCGAGGAGCGGTGGCGCACCCCGCTTCATCCACCAGCCTCGCTAGGTTGGGATGCCAAGCTTAAAGAATCGAGCAGATCCTGCGCCTTTTCTGCCTGCAGTGATGCATTGCTCTGCCTTCTTCTAATACACCATCTGTCCCAAAAATAAATGTCTCAAACTTAATACAACTTTGTACTAGCTCTAATACAAAGTTGAGACACTTATTTCGAGACGGAGGGAGTAGTAAGTAGTGGCGTCCGTTTGTATATTATATTAAGTAGAAATGAAATGACCTAAGAAAAAGGCAACAAAATGCAACCGATGTTTAGTGTGATTTGCCTTGTAAGTTATGT | |||||||||
gi|222370333|gb|GH731455.1|GH731455 GR45.122H14F010720 GR45 Triticum aestivum cDNA clone GR45122H14, mRNA sequence TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTCCAGTTATATGGTTTGGAGTTTTTGGGGCTGAGGTGCACTACAACTCGATATATCCAGAAGGAGAGTTGCCCGTCGTGGAGAACAGAAAGAAGAGGTGGTGGCACTGGGAGTTCTAGACTTGTAGTGCTAAAACCAAAAGGGGAATAGAAGATTTGATTTGTTCTTTTGATCTCATGGCAGCTTGTTGGATCGACGGTCGTTTTGTTCGACCATGTGATTACGAGGGATCCGAGGAGCTGCGATGCCGTAGGATCGATGAGGAGATTGACTGACAGTTCGTTTGTACATAAGTACTCCCTCTGTTCCAAAATAGATGACTCAATTTTATACTAACTTTAGTACAAAGTTGGGTCATCTATTTTGGAACGGAGGGAGTATATAGCAGTATCTGCAGGGACGAAAGTGTTGACTGGGTCTGTGATATGTGATGTGAACATTTGTTGTAGTACCTAAT | |||||||||
gi|222364488|gb|GH725846.1|GH725846 G118.124F19F010828 G118 Triticum aestivum cDNA clone G118124F19, mRNA sequence TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTGAATGCAAGACATCTTTGACGCCCCTCTGGAGATGTTTCTGAAGGATGATAACCGGACAACAAGACAAAGGGACTGGATGGGGAAGACTATTCCGGTCCAGTTCTTTGACTACGAGGCAGAGGGCAAAAAATATGTCATTTGGGGCTTGACCGCACACATTCTGACCCGTGCTGCATCAGTCGTTCTACAGAGACAACCATCATTCTCTGAACTTCCAAACAGACCAGAAAATATTCCCACCAGCAAGCACTGACGAGCTGAAAACTTGGGCAGCAATATTGATATGTACTCCCTCTGTACCAAAATACTTGTCGTTGGGGAAAACCAGTACAAGTTCCCCCAGCGACAAGTATTGTGGTACAGAGGGAGTATGTAATTGTAGCAATTTTTACACCCCATTTACTGGTACAAGAGGCTATCAGAAGTCTAAAATTAAACAGGTAATGTATATCTGTAGAGATGTAATTTGCATTGCATGTATAGCACAGGAAGTAGTATCCTGGAACATTTTGTGACATCCTCTTTTGAGTTCAGAGTCAAGACAATGAACGCTCTGTGGAATGTG | |||||||||
gi|222365832|gb|GH726152.1|GH726152 G118.114I19R010926 G118 Triticum aestivum cDNA clone G118114I19, mRNA sequence TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): GCTGCTGAGATAATCTGTTGATCACAGTCCCAAATCCAACGATTATTCCTAGGAGGTAACTCCCTCATCACACACTGGTTTACACAACACCACATAATGGAAGGACATATGGCGCGATTATCCGCCGTCGACTCATGTATAGTAGTCCCTCTGTACCAAAATACTTATAGTTGGGAGAACTTGTACTTGTACAGAGGTAGTACATCTGCAGGGTACGTACGTACGTACAGTAGAACGTTCCACAATGGTATATCTTGTGGCATCGCATAACGACCGTGCATGTTCCGCACGCTGTAGAGCTGCGTGCTCAATTTATACCGCGTTGCAGTTGACGTTGGGGTCGATCTTGAAGGGCGGCTGGACGCCGCACCTGCCGGGAAGACCCGAGGTGCGGACGAGGTACGGCCCGCCCGACGAGGAGGAGGCAGGTCTTGAGGCAGGAGAAGGTGGAGTTGGAGGACGGGAGTGAAAGAGCAATGAAAAAAAAGGATAAGACAAAAAAAAAAAAAAAGCACAAAAAAAAAGGAAAAAAAAAAAGAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAACAAAAGAAAGAAAAAAGAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAATAAAAAAAAAAATAAAAAAAAAGAANGAATAAAATAAAAAATAAAAAATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAATAATAATATATATTACAAAAAA | |||||||||
gi|222370498|gb|GH729761.1|GH729761 G750.106K06R010801 G750 Triticum aestivum cDNA clone G750106K06, mRNA sequence TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): GCTAAGCTGATTTACTTTATTGCAAAGTTGAATTTACGTAGAGTGTGCACAAATTCAACCAACAAGTCGTCTCTTCGAAACACACATAAAACATACTCCCTCTGTCCCAAAAATGTCTCAACTTTTAGTAACATTAGTACTAAAGTTGAGACACTTGTTTTGGGACGGAGGGAGTATATGGTAGGTGCTACCATGCCCTTGCTCAGGCAGGAACTTCGTCGGATGAAGGGTACGTCTGAAGAACATAAACCGGGTCGCCGACCTTGACGATCCTCCCTTTTCCCTTTGCTGATACCGATTCCTTGCAGACCAGATATTGCCCAAAGTACACCTTGTGTTTATTCTTGTGGCTCGGACAGATCACTTCACCGGACCGGAATGTCAGCATAGTTTCTGTTGGTTCGGTGCCAAGTATTCATTCTCTTGATTAACG | |||||||||
gi|143800305|gb|CJ966226.1|CJ966226 CJ966226 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul40h1 TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): TATACTCCCTCTGTTCCAAATTACTCGTCGTGGTTTTAGTCCAANTTGNACTNAAACCATGACGAGTAATTTGGAACGGAGGGAGTATATGGCAATGTCAGTTCTAAGATTAGTTCTTAACTGCTTATGGCTTGTTACCGAGTACTTCTACTTAATATTTCTTATTATTTGTTGTCAAATATACCTAAGGGCACCATCATGTTTATTTTTGTTAATAATCACTGACTTGACATTAGAGCTTTGTCGTCTCAGTTTTGATTTTTCCAAATGGATTTGCTTATCAAATGGTTGTCTCTCGGGTAATGCGTGCACTTAATTCAAGGAAAAGATATGAATGGGTATGCAGGAAGGGGAGTGCGTTCCGCTGCTGTATGAGAAAAAGTGCACGCAACTGAGGACCTAGGATGCCAACGGTGCAGAGCCGTTCACCATCGAGAGGACCAGGGCTACCATCAGGAATCTCCGGACCAAGCTCAACATCACCGTCGCCTTTGTCAAAGACGTGTCCCGGAGGGTAGTTGTCATCTGCGACTCCTCCTCCAAATGCTGGCAAGGATGTGGCGAGTCATTGGCGACGTGCACCGGGTGATGAAGCGCATAGTGGATGAGGTGAGCGAGCTTCTCCCATAGTCACCACACGGTCGGAGGCATCAGAGGCACACCACCGCCGTTGGGGCCTACACATGCGCAATTTCTATTGTTGTATCTTATTAGTTGCCATGCAGCAAGATGCTTCTGTCGATGGTATTATAATTGTTGTGTGTTGTCTGTGATGGAATAT | |||||||||
gi|239861632|gb|GR303846.1|GR303846 WRIS_3118 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): GGGAATTCGGCCATTACGGCCGGGGGGCAGGTGCAGGAGTGCTGCCAAGACCTCCGGTCCCTACTAATATCAACCATGCAGGTCGCATCCAAGAAAAGGAGAAGGCGGGATTCCTGAAACGACACTTCGGATGGAAGAAGTAACCACCTGCGCTGGCTTGTATTCCTGTGAATATTATAGATGGTTCGACAAAGCTCGTGGTTAACCGAAGGAGGATATTTGAGAGCTTTTGTGTTAGAACATGGCCATCTTGTGCGTCCGCAGCAGCCGGGGTCATCAGGAGGGAGTGCTCACTGCATGGACCAGATCACGCTCTGTCAGCCATGGGAGTCGTGCGCACATAGTGCCACACATGTAACGTTTAGTTGTGTGATCTGAACTGTTATGTGTCGTGTAACCTACCTCATGTGTGTGTATGATAAAGAAAGAACCACATCAGTGGAAGAGTTAAACCAATCGTATGGTATGACAGGTGAGACGTCACATATGTGGAAGCAAAAAAGAGTTGGAGGTAAGGTGGTTTTCGTACATACTGGTTCTGATCCCTCTCATATTTTTGTATCCTTATTATCTACTCCCTCTGTCCCATAATGTAAGAGTGTTTTTGACATTAATGTCAAAAACTGTGTCAAAAACGCTCTTACATTACTGGA | |||||||||
gi|143793808|gb|CJ959736.1|CJ959736 CJ959736 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul20n2 TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): GTCAGAGGTGCGTGCGTTAATAGAAGGCCAGTTCATGTCCATGAGGGGACATGCCGAGAGGTGCGGCCTGCCGGTGCCTCCGAAGCGGATCATAGCAACTGGTGGCGCCTCGTCGAACCAGGCCATTCTCAAGACGATGGCGTCCATTTTCGGCTGTCCGGTTTACACTGTTCAGAGACCAGACTCTGCCTCGCTGGGTGCTGCTCTGAGGGCAGCCCATGGGTGGCTCTGCAAGCAGCGCGGCGAGTTTGTGCCGATCTCACGCGTGTACTCGGGCAGATTGGATAGGAAATCGCTCAGCATGAAGCTGGCTGTTTCCATTTGGGGGCTGCGAGGGGGACGATGAGCTCCTGAACAAGTACGCGTTGTTGGTGGAGAAGAGGCTGGAGATTGAGCAGAAGCTTGTGGAGAGGTTTGGCCGTGTGAAGTAGCTTGTTTTGGGGCAACATTTCTCTGTGGATATTGAAAATCGCGTCGACGGTAGTGGACCTCTGAAAATGCATCTTCAGAGAAGGATAGTAGAGAAATTGGATCAGGACTTGAGAAGTGCAGGTGCAGCAGGCAGTAGCTGCCTAGTTTAGGCATGGACAGTCACCATGGTAACATCGTTTCATGGGTAAGGATTTGTATTTTACGGATTGAGCATGGAATGCTTCTTAAGTACTCCCTCTGTCCCATAATATACGATCTAAACGCTTTTAGATCACTAAAGTAGTGATCTAAATGATCTAAACGCTTTTATATTAGTTTANCTAGGTAGTATATCATAAGT | |||||||||
gi|222366760|gb|GH727106.1|GH727106 G356.113D22F010920 G356 Triticum aestivum cDNA clone G356113D22, mRNA sequence TTTTGGGACAGAGGGAGTAGT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGGAAGGTAATGGTGGGTGTATGATACCGGCGAAAGGTGCGCGGTATTAGAGAGGCTCGCAATGGTGGAAGGGTGAGAGTGCATATAATCCATGGACTCAACATTAGTCATAAAGAACCCACATACTTATTGCAAAAATCTATTAGTTATCGAAACAAAGTACTACGCGCATGCTCCTAGGGGGATAGATTGGTAGGAAAAGACCATCGCTTGTCCCCGACTGCCACTCATAAGGAGGACAATCAATAAATACATCATGCTCTGACTTCTTAACATAACGGTTCACCATAGGTGCATGCTACGGGAATCACAAACTTCAACACAAGCATTTCTCAAATTCACAACTACTCAACTAGCACGACTCTAATATCACCGTCTCCATATCTCAAAACAATTATCAAGTATCAAACTTCTCTTAGTATTCAATGCACTTCATATGAAAGTTTTTATTATATCCCTCCTGGATGCCCATCATATTAGGACTAAATTCATAACCAAGGCAAATTACCATGCTGTTTAGGACTCTCAAAATAATATAAATGAAGCATGAGAGTTCATCTATTTCTTCAAAATAAAACTACCGCCGTGCTCTAAAAAGATACTTCCTCTGTCCCAGAATATAAGACGTTTTGACACTATGCTAGTGTTAAAGACATTCTTATATTTGGGGACGGAGGGAGTATAAGTGAAGCACTAGAGCAAATGACAAACTACTCCCAAAGATATAAGTGAAGATCAATGAGTAGTCGAATAATAATGCAAATATGTG | |||||||||