| mature miRNA: TTTTGGGACAGAGTGAGTACT species: Nicotiana tabacum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|311120996|gb|HS081339.1|HS081339 nta1053 Tobacco cultivar SR1 apical cell cDNA library Nicotiana tabacum cDNA, mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): AAGCTAAAATTGTGATGGATAGAGTCTCAGACAAATCCAAGGGTTTTGGATTTGTCACCTCATGCATCTGAAGATGAAGCCAAGAAGGCCTTGCAAGAAATGAACGGCAAGCCTCTTAATGGGCGGGTTATTTTTGTGGACTACGCAAAGCCTAAAGCCGATTTTGGTGGGGGTGTGCCAATAGCCAGAGGCCCCCCTGAGCCACCAATAGAACAGTAAATGTTGCTGCAGCCAAATTGTGTTATGAAACAAACCACTCTGTGTGCTGCCAGAGTTGCAAGCGTTGCTCTTGCAAATGATTAATCTGCAGAGAATTNGTGTTCTCCTTTTCCCAACGAAAAATTATACGAATATATTGTAGGGATTATAAGCCATCTGCAGTCAAAATTGGTTGTGTTTCAAGGATGAGTGCAAAATTGTAATGACTGACTACAAGATTGGCCCAATATGAGAATCTTCTACTCCCTCTGTCTCAAAA | |||||||||
gi|156697746|gb|AM812653.1|AM812653 AM812653 DL, diurnal library Nicotiana tabacum cDNA clone nt005062061, mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): ATTGACGCGCCCCACCAGAACTTACTGAAAACCAGTCGCCCAACCCAATAACGTCGGCGACCACATACGTACAGCGGCAACACAACACCTCACGGCGAAGCTCTAAAATCAGTTGTTATTTTCTCCATAAATCTGGACCTTAGAACTCTAGCATTACAACTCATTCTTCAAGGAATAACGCAACAGCAAGCTAGCAAATTCAGCAGTTGTAGCTCTTCATTTCACTCCCAATACGGTTCCAAACAGTCACTAATTTCATGTCCAAAATACGTCGGAGTCGATCCAAGGAATGCATAGAGTTACGAGGTTTTCCGGCTGAAAGCCAAGGCTCTTGCTACTGACCTCCCTGATGTAAGCATTGTTCGGGGTCCAATTGAGACTTTTGTGAACTCTGACACACTAGGACTTGGTCCTCAGTCTGTCCTGAAATCTCCTCTGTTAACCTCCCTAGTATGAGCAC | |||||||||
gi|190876829|gb|FG163037.1|FG163037 AGN_RNC015xo14f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): TCGGTCCGGATTCCCGGGATCACGTCCGAATGTTTAGCTCTGATCAGGGGCGGAGCTAGAGTGCGTGGACGGGTTCGGCCGAACCCACTAGCTTGGTTAAAACCTTATGGCTTTAATTAATGATATGAATATTTGTAGAGTAAGAATCATGAGTCTCATGTCTTACCATTTTTTTTGGCTGTTACTCCAAATTAGAAATTGCAAACATGCCAAGAATTCGTTGATCGCAGTGGCCTCTTGCAACAATCCTTTGTAATTCTGACTCCAAAGCAACATAAGCGTTACGTGACTTCAGGCAATGATCTTTTTCCCTCCTCTTCGTTAGTACTCCCTCTGTTCCAAAAAGATTGGCACTATTTCCTTATTAGTCTATTCCAAAAAAATTGACATCTTTCAATATTTTCTTAATTAGTCGCAATTACAGCCACACAAATGCTATGATAGATTTCAAACCACAAGTTTCAAAAGTTTTACAGACATACAAATGTTATGGCTTATTTAAGACTACATATCTTAAAAGTCTTTCATTCTTTATTAAAGTTTGTGTCAAGTCAAACTAAGACAATTTTTTTTAAACGGAGAGAATATTATTTTTACATTCAATACTTTTATGACAAACAAATGTGTTTTGCTTCAATTTCACTCTCAAGTGTTCACATTTTGTAGCTGCAGAGACACAATCTGCAGTTCTAAAACCTCGACAAAGACATAAGAACAGAACCTGTGCCCTCAAGATGACCTGCAGCTGCCTAAGCAAGGTACTTTATTTGACATCTTCTGTCTTTGGTGAATTGTATGACCATCTCATCAAAAGTTTAGCTATTAGCGAGAATACACTTTTTATCACTAAATATATCTTGACACTAAACTTATAATTAAATGATCAACATTATGAGG | |||||||||
gi|224703646|gb|FG627718.1|FG627718 TOBESTR075G01 TOBEST cDNA library 1 Nicotiana tabacum cDNA 5', mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): TCAAAAAGTGCATGCAATCCAAAGCCATTCTCTTGCAAGTTCTATCGTGCTATCCACATGTATTAATAAACAAAAATTTGAGATTCTTTTGCCTAAGAACCCTTTCTGCGTTTGCATCTGGCTGGCTTTACCACACATTAGCCATGCCTAGATAAGACGTTTCAATAACTTTTTGATGAATCTTCAAAATGATTGTTTGATCTTTGGTTTTTATGGTTTGAGCTCTGCTTTTTCTGTTAATACATCCTTCTTGTTTTCGCTCTGTTCCAAAAAAAAAAAAAAAAAAAAAG | |||||||||
gi|156670678|gb|AM798912.1|AM798912 AM798912 COL, cold overnight library Nicotiana tabacum cDNA clone nt006166085, mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): ACACCATTAGCTTTGAGCTTTCGTTACAGTACAACAACTACTACTACTACGTCTAAGTCCTAAACAAAGTTGGGGCTAGCAATATGAATCTTCATTTCTTTCTTTAAACTTAACTTATATCATCATCCTGCCAAAATCAAGTAACAATAGTAGTGAAAATAAGTTTTATATATTTAATAGTAAAAGTAATAAGAAAAATAGTACTCCCTCTGTTTCAAAAAGAATGAACCTATTACTATTTGGGGAGTCAAATAAGATTTTCTTTGACCATGTTTTTTGCAAATAGTTATTAATTTTTCTTTTGAGAAGGAAAGAAAGTAGTTTTTTTGCAAATAGTTTTTGGATATGTTGAATTGTTGTAGATTTTTCAGAAGAAGAAAAGGCTTCTTGTATTTCTGTGTATTTCTTACATCCCTAAGTAAAGGTGTTTATACACCAAGTCCTATGACTATTTTAGGAAGGAAAATAAATTACAATCAATTATAATCAATCAGAATAAAATCAAATCTCAA | |||||||||
gi|224701095|gb|FG624602.1|FG624602 TOBESTR039B01 TOBEST cDNA library 1 Nicotiana tabacum cDNA 5', mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): AGGATCCCCTATTGTGGCACACTTTACTGCTGCTTGGTGTATTCCCTCTGTGGCAATGAACCCCTTTATGGAGGAGTTGGCTTCTATGTACCAAAATACTATTTCTTTTCTCACAATTGATGTGGATGAGGTCAAGGAGGTGGCTAGCAAATATGAGGTGAAAGCCATGCCAACATTTCTGCTGCTGAAAGATGGAGTGCCAGTTGACAAGCTAATTGGTGCAAATCCAGATGAGATAAGGAAAAGGGTCCAGAGTCTTGCTCAGTCCAACCCTACAGATATAGCCTAGTCCAAATAATACATATATCCCTTTTGTTGTATAATGTGCTGCAAAAGAGATTCTTTGAGTGTGTGGCTTGTGCTATTTCATCTTTAAATTGTAGATAATTCCATATCCACTTACAGAAGACTGTTTAATAATAGTGCTTTTTCTGTCTTAAAAAAAAAAAAAAAG | |||||||||
gi|156665805|gb|AM791434.1|AM791434 AM791434 DL, diurnal library Nicotiana tabacum cDNA clone nt005086022, mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): CCTCATGCGGCCGCTGGGCGCTTGAGTTATGGTTTAAACCGACGTGGTGGTGGGGGAAGAGCTGAACAAATAATTAATAATGCAGTTGCTGTTAGTATTCTTCACTCTCTCATTATGATATGATTGTGTGTGTTTATGTATGAATGTAATTGTTTACTAGCAAAAATGTGCATAATTAGTACTCCCTCTGTCCCAATTTATGTGTCGCTCTTTCATTTTAACTCTATGACCGTTCCAATTTGTGTGACTCTCTTTCCTTGTTAGTCTTTCCAAAAGAATTGACATATTTGTAAAATTTGAATTGACTTTAAACTTTTCATTTTATCATTTTACGATTAATGATATGATTTGTAGCCACAAAATGTCTGGCTTGTTTTAGACCACAAGTTTCAAAAGTCGGTCTTTCTATCTATCTTAAACTCTACGCCCAGTCAAATATATCACATAAAATGGGCCA | |||||||||
gi|83418600|gb|DW000594.1|DW000594 KL4B.108F01F.051105T7 KL4B Nicotiana tabacum cDNA clone KL4B.108F01, mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): TCCTTCTTACAATTATCACAACTTAATTAGTAGTTATAAAATTAAGATTTATAGTTTCAATTAAGAAACAAAATGGGATCAAAGGCATTTATGCTTATTGTTTTGGCTATTTTACTTGTGATAACATCAGAAGTTGCAGCTAGGGAGTTGGCTGAGAGCACCCCCACTACTACGGACAATGGATTTCCAGGAGTCGGAGGTGGCGGATTTGGAGGATACCCCGTAGGAAGATATGGAGGATACCCTGGAGGCGGATATGGTGGATACCCTGGTGGCGGATATGGTGGATATGGTGGATACCCGGGTGGTCGTGGATATTATGGAGGTTATCCAAGAGGCGGATATGGTGGATATGGTGGCTATGGTGGTGGCTATGGAGGATATCCTAGAGGTGGTTGGTATGGAGTATGGCCTCGCGACTAATTAATTTACTAAGGAATATATATATGGAGAATATTCAAGGTGTCTATATATAATGTGTAGTACTCTTTCTGTCCTAAATTATGTGTCACTTTTCGTTTTTTCGTTTTATCGTTGGAAGTATGAATAAATGTACCAGCAATATCCATTCACTTACTATGGGTGGATGGTCATGTCATGATTTTATATCTGTATGTGAACTTACTTGTATACGTCTTTTTTTACTTTACATATAATTGTCATTT | |||||||||
gi|156684881|gb|AM848695.1|AM848695 AM848695 DL, diurnal library Nicotiana tabacum cDNA clone nt005215083, mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): GCCGCTCAAGAAGGGTGTTGATAATAAATCCCATGTTACTAGGCTTGATTTTGGCACACGTCCTAACCCAACATGCAAGGCTACAGCCACATTCCCTAATCTTATTTTCCAACTCCCAAATCTTGAATCTGTTTTCTTTATCCAATGCTTCACACACAGCAGGACAAGCATATCTGTTTCAAGAAGCAGACTTTTCAGCTCTTCACTTCAGCAGCTGAGTCTACGATCAAACCCTGCACTCATTGGCTCTATCCCTTCTCAACTCTCTTCACTAAAGTCACTTCAAGTTCTTACACTGTCTCAGAACAGTTTAATTGGACAAATTCCAGTAGAAATCTTCAGTATGAGCTTTCTTGTACATCTTGATTTGAGCTACAACAAGCTTACAGGGAAAGTTCCAGACCAAATTGGTAATCTCCAAAATCTTGTAGGCCTTGATTTGAGTTATAATAAGTTCATAGGGCCAATCCCTTACACAATTGGCCAACTTGGTATGCT | |||||||||
gi|311121119|gb|HS081462.1|HS081462 nta1176 Tobacco cultivar SR1 apical cell cDNA library Nicotiana tabacum cDNA, mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): AAAGTCAAATAAGATGACACAGGAATGTTTTATGGGATTGAGTATTCCAATGACATGTTGCTACAAGCAGGTGAAACTGGGAATGTACAAAGTGAGTTGTTAATGCAGAAAGATGCAGGGATTTTCACATTTAGGGAAGGATGGGCTTTTCCAAGAAAGATTTCGTCCAATGGAGAAGACTGTGTTTNACCTTCACGATGGCTATCCAAGGCTTCCAAATTCTAGTCAATTTATGGCTCCTTCAATATTTACTATCATTGTTTTCTTCCTCTCTTTGATATTAACCTTATTTTAATAAGTTTAACCAGTAATTAATACTCCCTCTGTTCCAAAAA | |||||||||
gi|190146162|gb|FG645082.1|FG645082 TT-38_P04 K326 late senescent leaf library Nicotiana tabacum cDNA, mRNA sequence TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): AAAAAGTTGAAATTTTCNNNTCTTCCATGGCTTCTTTGCTGAGCCCACCACTCACTCTGTCTCAAAACAANNNGTCCTATCNNTTAGCTACCAGCGCAATACCAAGCATCTATTTTCAACCATTTTTAAAACGGCGAAGGAGCCACAGGCATTGTTTACTGATGAGAGCTAAAGCGTCGGTGGAAAGGGATATGCTTGCAAAAGATTCTGTAGGTGCCAATGCTATTGATGATAAGGATTTTGGAGTTGTTAGCATGCACCATGTCGGAATCCTATGTGAAAACCTTGAGNNGTCGTTGGACTTTTACCAGAATATTCTTGGACTATAAATAAATGAGGCAAGACCACATGACAAACTTCCCTA | |||||||||
gi|254647318|gb|FS437769.1|FS437769 FS437769 normalized full-length tobacco cDNA library Nicotiana tabacum cDNA clone TBK02GR010 TTTTGGGACAGAGTGAGTACT EST sequence (targeted fragment marked with yellow): GGTGCAAACTCCGGTATATCCGACAGAAGCTCCATCATATCTTCGAGCGCCAGTCCTCTTCGTGCCAAAGGTATGCTTTCTATTTTGAGATATAGCACCTATTTATCCAGACTGATAGTGGCCTACTTGTACGAGAATTGCTACAATAATGCAGTGTTAGATCGGATAAAGAAATTACGGCTTTCACTTCTCAATCTTCAACAATTTCTCGCTAAAACCTATTACATGTGGAAACTTTAAAACTAAATTGTGATCCCAGCAATTTCCGGTAACTTCAAATTGAATATTGCTTGTGGTGGAGCAGTTTTATGTACTTGATGGAATATGGTTCAGACTGCTAAGTCACGTTGAGAAGGTATTGGTATTTAATCTGTCTCAAAAGAATTAATTACACTTAGTTACTCTTGCTATATATGAGAGTAATTGTCGGTTGAGGTGAATGTGCCTATTATAGGTAGGCGGATCT | |||||||||