| mature miRNA: TTTTGGGACGGAGGGAGTACA species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|166793310|gb|DV730234.1|DV730234 SUS01-030-G03-A-022.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA c TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): CGCTGAGGTCGAATAAGAAGGAATATGAAAATGATGATATCGCCAGAGATTTCTGTAGCAAAGTTGACCAGATTCTGAAAAGGCATTCAGGCGTTGGTGTCAAGAAACTCAATATTCAGATGCTTGGAGGTTACAATGGTTATGTCGACAGTTGGCTCCAGATTATTGATGTTAGATCAGGAATCGAAGAACTTTCACTTTCAATGCCAAGGAGAGCAAAATACAATGTCCCATGCTCACTCTTTTCTAATGGGAGTGGAGACTCAATCCAATACCTATACCTTACTGGTTGCTCCTTCCGTCCCAAAACTGAACTTGGTTGTTTAAGAAGCCTGACAAAACTGCATCTTTATTATGTCAGTTTTACTGGGGATGAGTTAGGGTGCCTTCTCTCCAATTCTTTTGCCTTGGAGGGCTTGGGAATCA | |||||||||
gi|36068516|gb|CA298344.1|CA298344 SCRFFL8035C12.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCRFFL8035C12 5', mRNA seque TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): CTTGAATGTGTTTTAAGAATATATGAGGTGATTGCCCGTACAGATTGTGTATCTTACATAGTTAGATCAATCATTTGTGGTACACACTATAGTTTAAGGCAACATCAAATCTCACAATGTCATTTGTGTCTCTTACATTAGTTCCGTCAATCATTTGTGTTACTTAATCCATGATGACTATATTCACTCACAATTGTTGAATCTGAGAGTGCTATTGTGCGTTTTTTTTTTGGGTGGGGCAGGGTCTCTAATGGCTCTCTTTCTTTGCCTCTTTGGTGAACATAACTTTCTGTTTATCTTTTAGCTGGGTTATGGTCACTAAACGAAACATGACTTCAATGCTAATGCTATATGCTTGAGGGCATGTGGTAGTTTCTTCACTTTGCACTTTGCATTCTCTGGAAATAAAAATGTTTCCTTCTGTTTTCCTAAATTGGATCAGAATAAACAGATTGCTCTTTCTATGCACTCATGGCTCGTAACAATGTAACATCATTTCTCATATAGCACTATTATCATTGTATTTGCATTAATTATTTAATTTGGAGTATCATGGTAAACCCTGCATTCTTTTATCTCTAGTGAGCATTCCATCTTCTACAAAGTTNTTTTAATGGCGATCTTCTACAAAGTGTGTACTCTCTCCATCCCAAAAAGCTG | |||||||||
gi|36026654|gb|CA285743.1|CA285743 SCEZSD1081A06.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCEZSD1081A06 5', mRNA seque TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GAGATCGGCGTGATGGCGAAGAAGCAGCAACGGCAGGTTGTGTGCATGGTGTTCCTGGTGGCCTTCCTTGTCATCTCGGCCATGCACGCCGTCCCTGCAGAGGCCGGAAGGACGCTAGCAGAGTCGTCGGTGGGTTACGAACCGCTGAAACCAGGCGTCTTGGATCCTGACCGACCAAACACCCGGCGATGCAGAAACATCTACGAGTGCCCGCATACACATGGAACTGCAACGCCATGAGTGACACACAGTTTGGTCCGCCTAGCCCACTTGCATCCCTGTACCTAATAGATGATGGCATGCAACGTGGAATGGAGCCGAGAGGCTGCATCCTTCTGGAATTATATTCTCGGTTGCCATAGGATAAGATAGCGAATAATCCCCACACCTACAGGATCGGACCATCTAGCGGTGGACGGGTGGAATACAGTACTCTCTCCGTTTCAAATCATAAGTTGGTTTAACTTATTTTTGGTATATATATTTTGCTATGTATCTAAATATAATAATATCAAGATACATAGCAAAATGGATGTACCAAAAAATTCAAAACAACTTATAATTTGGAACAGAGGAAATGGTAACTTATTTTATGTGCCTAAACCATGGGATATTGCAGTCTGGCATTAAGCAGATTCGGGCATATGGATGAATATACAATAAGGTAATGAAAATTCGTGTCTCTAATGGAAACTACTAACCGTTGTTTACATTT | |||||||||
gi|36035541|gb|CA287554.1|CA287554 SCMCSD2063B01.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCMCSD2063B01 5', mRNA seque TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): ACAGTCTAGGGGAAAACAGGAGCATAGCTGCTCATACTGTAGTTCTCCTGATGCGAAAGTAGAAAGAACAAATAGTACCTAACTGTACCGTGCTACAGGAAAAAGGTCCTTACGTTATACTCCCTCCATCCCAAATTATAAGGCATTATAAGAATCTTGGAGAGTCAAAGGATCTCAAGTTTGACCAAATTTATATGATAAGATAATAATATTTATGACACCAATTAAGTATCATTAGATTCTTTATTAATTATATTTTTATAGTATACTTATTTGATGTTATAAATTTTTATAATTTTCTCTATAATTTTGGTCAAACTTAAGATGCTTTGACTCTCCAAGATTCTTGGAATGCCTTATAATTTAGAATGGAGGGAGTACTTGTCATTGTTAAGTGATCTAACCAGTATGGAAATCTTTATGTTGGCCAAACATTAAGCCTGATGGCAATGAAAAAATTCTTGTAAAAAAA | |||||||||
gi|36068545|gb|CA298353.1|CA298353 SCRFFL8035D10.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCRFFL8035D10 5', mRNA seque TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): CAGTCGGCGGCGATGGGCGGCGGCGGCGCACATGGCGGCACCACCTACAAGGGCTACACAATCCCGCACAACAAGCGCTGGCACACCGTCGCCGGCAAGGGCCTCTGCGCCGTGATGTGGTTCTGGGTCTTCTACAGGGCTAAGCAGGACGGTGCCACGCTCTTGGGTTTGCGTCATCCTTGGGATGGGCATGATGACCACTCTCATGGTCATGGACATGGGCATGAGGCATCATCATCGCCGTCTTCACATTAAGTTCCCTACTCGCTGCTGACGGTGATTCAATGCTTGGCATGTTCCAACAACTAAAGATCGAGTTAATAAATTCTACCATCCTGCATGGGACTATGTTGTTTGCAACTTGTTTAGCTCAAATCGGCTAAGGTTGGCTAACAACTACATGTACTAAAAAAATTAGCTCATTTGTTAGCCCTTTTGTTTTAATACACTACATCTAATTTTAGCTAGCAATTAGCTCTTTCATCAAATAGGCCAGGTAGCCTGAACTCGTCAACTCGTCGAGAACACAAATGGGAGGAGGTGTCGTCCTAAGAACCATGCATATGTAAATACTCACTCCGTTCCAAAATAAGTCATTTTGGATCCGTTCAAAANANANN | |||||||||
gi|239916128|gb|FF281710.1|FF281710 RAPSAG19 sugarcane leaf tissue from germinating seedlings at 15 days after planting Saccharu TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): AGTGAAAGCTCGGTAATCGCGATGCATCTAGATTCACGTCCACGCAAGAGAGAGGAGGGGGTCATCGGAGCGACCGGTGGGCGCAGAGACGAGGGAAAGTGCGCACGTGGGGAGGGGTGAAGGCGGACGAGGCGGGCTCACCGGTGTCCAGACGCGCGCGTCCATCAGGACGTCCGGACGCTAGCTACGCTGTTTTAGATTTGCATGTTTTAGTTTAAAACTTAGAGCATATATTGATGACCAATTTGGGCTCAAGATGAAAATATTAGGCAGGCCAATCCGCCAAACCAGCTAGCTAAGTTTTCCATTGTATCGGGCCTGACAATAGGGAAACTAGCCATGCTGATTTTAGCATAGTCCAGGTCCAACTTTGGAAACACATGTAGATTCTCAAGTTGTGAACGTTTCTAATGGGGATAAGACCACCCACCGTACCCTATAGAAATAGGAGGGGGTATGATTGATTCAAGGTATGGAAACAACTAAAAATAAACTAATCTACTCTCTCCGTTCTAAATTGTAAGTCATTCTATCTTTTCTAAATACATAGTTTTCACTATTGATCTAAACATAATGTATATCTAGATGCGTTGCAAAACATTGCATCTAGGAAATTCAGAACGATTTATAATTTAAAATAAAGGTGTACTTTATATACATCTTTAAACTCTATCTCTTTCAACACGAATACCTTGTTGTCCTGCACATATCTTGACGTGATTTGTGGACGTGAAATCGATCCCGGGCCCGTCGACTGCAGGGCTGCATGCAGCTTTCCTATAGGGGTCGTATTAAAGCTTGGCGTATCATGTCATAGCTGTTTCTGTGGAATTGTTTCCGCCCAATCCCAAACATACGACCGGAGCTTAGTTTAAGCCTGGGGTGCTATGT | |||||||||
gi|268803999|gb|DV549016.1|DV549016 SUM01-074-D10-A-078.g Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): TGTAATCTCTCTGCCAGAGAGAAAATGGAAATGCATATCAGCAATATGCTCCCTCCATCCCAAAATTTTGGATACAATCCTAGAACGATACCCAATCAAACTATCTTAAAGCTGACTAATTTTTTTTTAAAAAAAGTATTACACTTATTATACTAGTCTAGTAGATTTGTTCTGAAATTTAATTTCAGAATTTACCAATTCGCGCTGTTTACATCCAAGCAACTAATAGTTAGATATCAATAATTAGTTAGCTCCTCGGATCCAAATAATTTAGCTAATTGTTAGAGTATCTTCGAGAGTACCTCATATCCCTTTCCTATTCATGATTTTTGAAAAAAAAAAAGAAAAATTCATCTCCATGAGTACCCCATATCCCTTTTCCATCTTTTAGCAATGAGCAAACAGGTCGGCATTGTGCGTAAAAATGCGCGCAGCCTTTCTTGCGCGCATCGCTCTTCCCCGCGCCGTCTTCTCGGTCAATCTAAAGGCTGAAG | |||||||||
gi|36016076|gb|CA283028.1|CA283028 SCBGSD1049D01.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCBGSD1049D01 5', mRNA seque TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GAGAATACAACCGTCTCCAGGTCCAGGATTTAGTCCCTCCGTCCTAAATTATAAGACATTGCAAGAATCTCGTAGAGTTAAAGGATCTCAAGTTTGACCAAATTTATATAATAAGATAATAATATTTATGATACCAATTAAGTATCATTAGATTTGTCATTAATTATATTTTCATAGTATACCTATTTGATGTTATAAATTTTTATAATTTTTTCTATAATTTTGATCAAACTTAAGATGCTTTGACTCTCTAAGATTCTTGGAATGCCTTATAATTTAAAATGGAGGGAGTAACTTTTAAGTCGGTGCCAGCACAACGTGGAAACCACGGCGATACATCCAACTCTTCTCCTTCCTTTCAATCGAAGCATCTGGCCTGTTATATATACCAGATTCATATATCCCACAGCTACACCGCGTAAACATTATTCATTCCATTCCATATACAGTATCATCCTTCGGAGCAACTCGATCGACATGGAAGGAACCGACCAGGTGAGGCCGTCAAATCCGCCATTGAATTCTGCAGTTGTCTCTCCGAAATTCCATCTCTACTTTTACTACTCTCTACTATATTCGACATGCGATTCTTTTTGGTTTCCAGATATANTAAA | |||||||||
gi|36055462|gb|CA293979.1|CA293979 SCSGLV1009B01.b LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCSGLV1009B01 3', mRNA seque TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): TAATTTTGTAAGATGTCAAGTTATAGGATGCCTGAATATCGGCTTCTCTTTTTGCCTAGCTACACTACTGCTCCAAGTGTCTACTGCGTTCCTATGCCATCTATTCGATGAGCCACTATAAGAGCCATGTCAATGTAAAAAGTATCCAAAAGNTATCCCCCTCCTCGCTTGGTCCCTTTTATTGTTTTCCCACTGGATTGGGCCACACTGACTGCTATTATATTGCGATTGAATTTGNNTTTCGATTTAATCCTGAGGGCATGCCTACAGTTTGGGTTCTATGTTGCTATCTACCGTTTTGGTCGTGAAGCAACTGAGAAGTTTTTGGGTTTTTTTTTTTGTGCAGCTTCATTGATCAGGGCCCTTCTCATGGTACAACATGCAGGCTGCTTTTTTTGACAATGTGCATGCTCCCTTTTATTCGTCCAAGTTTGAGACTTGATCCGGAGTGCTCATGAAGATGGATCGATAAGGGACTTATGCATGGGCGAAATGACTGCAGATCTCGCCATGAACATGACATCACAAGCGGCTTCCTTTCTTCCTCTGTTTGCAGATCGTACAAATTGAACAGAGGATAGTTAAGCAGGCGGACAGAGAGGCGCCTATGAATACTATTGTGGAATTTGGAGGAAAATCTGGTACTCCCTCCGTCCCAATGAATATGCAACTATGGGAAGCGTGCCGGTCAAACTATATCAACTTTGACCAAGTTTATAGTAAAATGTATTAGCATTTATATCTCGAAATAAATTTATTATAAAAATATATTTCAT | |||||||||
gi|35991254|gb|CA274661.1|CA274661 SCACSD1018D06.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCACSD1018D06 5', mRNA seque TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): GCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTCCAGGGACATGCGCTTCTGGCCTACACGCCGTGCATCCTTCAGGGATGCCGTAGACTCGTATTCCTTGGAAGCTTCGAAGCTAGCGTATCACCTGCTGGAGTTCATGGCCAAGGGCGTCGGGGCCGACACGGCGTCGCTGCGAGGAGTGTTCCAAGGGCAGGTGCGGCGCATGCGGGTGAACTACTACCCGCCGTGCCGGCAGGCGGCGGACCGGGTGCTGGGCCTGTCGCCCCACACCGACCCCAACTGCCTGACGCTGCTCCTGCAGATGAACCACGACGTGCAGGGGCTGCAGGTCAGCAAGGACGGCAGGTGGTTCCCCGTGCAAGCGCTCGACGGCGCCTTCGTTGTCAACGTCGGTGACGCGCTCGAGATCGTGAGCAACGGAGCGTTCANAAGTGTAGAGCATAGGGCCGTGATACACCCAACGCGGATNTCGGCGGCACTGGTCCACTTCCCCGACCCAGATCGGATGCTTGGTCCTCCTGCCGAGTTGGTGAAGGAAGGCGACAGAGTGCCGTACGGAACCAACAGTGACCAAGATTTCTTGGAGCAATTCTTCACTGCANAGCTCGATTGAAAGAAGCTCATAGAGAGTTTCAGGTAGAGTAGAACTACGACTTCCCCCATACCATTGGAGTTAGAAGGAGGTGACGACCTCTCTCAACTCAACCATTAATAAATATATACTCCTTCCGTCCCAACTATAACCACTTGGACTTTTTGGTCATTC | |||||||||
gi|268777428|gb|CN608955.1|CN608955 SUL01-035F-E08-055.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo TTTTGGGACGGAGGGAGTACA EST sequence (targeted fragment marked with yellow): CCGAATCTTTTGAGCCTAGTTAGTCCATGGTTGGATAAATTCTGCCAAATAACAACGAAAGTTGCTACAGTAACTTTTCACCCACTTTTCATCAACTGAACACCCCCATACTATGTTCTACTCCCTCCGTTCCAAATTATTAGTCGTTCTGGCTTTTCTAGGTATATTGTTTTTTGCTATGTATCTAGAAAAGCCAAAAAGACTTATAATTTGGAATGGATGGAGTATATATATTACTGCTATGTTCAAACAACGAAAACAGTATGTCTGTTTCCATTTTTCCTTGCAAGGCTTTTACTTCCAAGCAAGTTTGGTGTAGACTAGAGGTGAAACCCAATAGCGTGACCAATCAGCACATTTCCACCAGTTGTCTGGTTTCCCTTAAATCATTGGTACACCTAAAAAATGCATAATAAATGCACCAATGTTCCAAAATTTCTAATATTAGATCAGTTACAAAGTTTCCACAGCAATACAAGGGTGACTCCTTGTTCCCAGCTTAATGCAAATGTTGTCTTACCTTGAACTT | |||||||||