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mature miRNA: TTTTTCTCTATAGACTATCTCCAG
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|44677611|gb|CR291045.1|CR291045 CR291045 Oryza sativa library (Han B) Oryza sativa cDNA clone y650b10p3, mRNA sequence 

TTTTTCTCTATAGACTATCTCCAG
||||||||||||||||||||||||
AAAAAGAGATATCTGATAGAGGTC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTTTTTCTCTTTCAGCTGGCCGACATGATAGGGTAATCAAATGGGTTAATCAATCATATTCCCTAGCTAAGCTCACCAGTGTACACTGTAACTCGAGCAGAGCACAGCACGCGCGCGGCAGCATTTCCTTCAGTTTTAACGACACCATCGCTGCAGCGTACTCCGCGGTTTTCTTTCTCCGCGACGAGCATCTCGAGGCACCCGGCGCCGTCCTCTGCACGAATCTCAACGCACCACGCCTTCGCCGTTGCCGTAGCCGCGCCCGCGCGAGCTTTCACACACGCTGTCACCGACAAAGCAATCACCGGGAGAGGATTAATTGGCAATGGTGGAGGATGATTAGGGCACCCACAATGGTTATTTATATACTTTCTACAAAAGATTCATGTCAGTATATTTTTCTACTTGGAAGAGATTAAATAAAGAGAGAGTAAAGCTATCTACTAACCTGGAGATAGTCTATAGAGAAAAACGATGCAATGCATTAGAGAGCTATAGATACCCATGTAGACATACTATTGAGGTGGTCAAGTATTAATCTAGTATATTGCTGAGATGTACATGTTTTATAAAGAAGCACTAATTTACCATTGAAGGTGCTCTTAAAGACAGGTTACAAGTATAGGCAGATAATAAATTCAAAT


gi|66919895|gb|CX106743.1|CX106743 BI128D10 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl 

TTTTTCTCTATAGACTATCTCCAG
 |||| |||||||||||| |||||
CAAAAAAGATATCTGATAAAGGTC

EST sequence (targeted fragment marked with yellow):
GGCTCGGGTCGGAATCCCGGGTCGACCACGCGTCGCCGGAAGTTTGACAGCGTCTGGAAAACCTCATCACTGTAATAGTATAGAGGTCTTGCACGCCTCCTTTCTCTTTCTTTTTTCTTTAGAGAACAGTCGACCTATTATTTGGTGTATCAAATATCAATTGCAAGGCACACATGATGATCCAATGGTTTGATCGGCGGTAAACTTCAATTGCGAAGCCATGGTTGCTGTGAGGTTTCTTGGTTTGAAGAATTCCTGGTTCAGTGGAACTTCAAGATCCCAAATCCCCAATTAGGCTAGGAATGATTTGTCAGACCAAATAGTCCATAAATAATAGTGTTGGCTTGAACGCGACGCCACCAACCTAGGACATTTCAAATAAGTGATTGCCATTGAATCTAATGTAAATTTGTTATGGTACATTTGTTGATAAATCAAAGCTTGGATTTTTTTTTTGGTTACTGCAGAATTGTTTATAAATATAGTCCACACATACACTTGACCACATCAGGAAACTCTTCTAATGTATACATGACTTATAAGGGCACCCGCAATGGTTATCTATAGGCTCTCTACAAGAGATCCATGTCAGCATATTTTTCTACTTGGAAGAGATTAATGACGAAGAGAGAGAGCAAGTTATCTACTAACCTGGAAATAGTCTATAGAAAAAACGAGGCATGGTTTGAGAGTATGATACCATGTGGTTTTTCTTGCAGGGTTACTATACCTATCATACGGAATTCTGTTTTTGTACCCTTCTTCCTGCGTGCTAGGTGAACCCATCCGGGCGGCACACCCCCCAACCACCCCATCACAACTTG


gi|86874711|gb|CI318270.1|CI318270 CI318270 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone 

TTTTTCTCTATAGACTATCTCCAG
||||||||||||||||||||| |.
AAAAAGAGATATCTGATAGAGATT

EST sequence (targeted fragment marked with yellow):
AAATCAAAGGTGTGGGCTCTCATACAGGAGCTAGCTTATTAAAAGCTCTAAGACAAATAAATTAAATGCATAAGTGAGAGATAGAGAGAAGAGAAGAACAATATAGTCAACCTTATAGCTAATCTATTATATATGTTGGGTTTAAGATGAGCTAATAGTAATAAATGAGCTATACTATTATTCTTGCTCTTAGGGCACCCACAATGGTTATCTATAAGAGATCTATATCAGCATATTTTCTACTTGGAAGATATTAAATGAAGAGAGAGAGCAAAGCTATCTACTAGCTTTTAGAGATAGTCTATAGAGAAAAACGAGGCCATGCCTGACAGAGC