| mature miRNA: GTTGAGGATAGGGAGGAGGAC species: Actinidia chinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|195299393|gb|FG521704.1|FG521704 030702KAZB016953HT (KAZB) Actinidia chinensis young fruit library Actinidia chinensis cDNA c GTTGAGGATAGGGAGGAGGAC EST sequence (targeted fragment marked with yellow): GAGAATCAAGAAAGAGAGACTCCGCTAAGGCCCCGCCGATTATTACTATTTCCAATACCATTGCAAGGCCACATCAACCCCATGCTCCACCTAGCTAACATCCTCCACTCCACCGGAGCTTTCTCCTCCATCACCATAATCCACACCCACCTCAATTCCCCCAACACTACCAACCACCCCCACTTCACCTTCCTCCCCATCTCCGACGGTCTCTCGGAGACCGAGGCCAGCATGGGGGACGTCATCGAACTCCTCGCTGTCCTCAACAAAACTTGTGCCGGGCCGTTCCGAGATTGCCTGGAGGAGTTGCTGGTGGGGGAGGGTGTTGCTTGCTTGATCACGGATGCGTTGTGGCACTTCTCGCAGGCGGTGGCCGACGGCTTTGGGCTGCCGAGGATCGTGCTGAGGACAAGTAGTGTCGCTTCGTTTGTGGCTTTCAGTGCCTTTCCCCTACTAAGAGAAAAAGGGCTCCTCC | |||||||||
gi|195247272|gb|FG499363.1|FG499363 030417KAWC011294HT (KAWC) Actinidia chinensis - active meristems Actinidia chinensis cDNA cl GTTGAGGATAGGGAGGAGGAC EST sequence (targeted fragment marked with yellow): TGTTCTCATCCATCGTCTGCTTCTTCAAAACCCGCTGTGATTTCGAAGCTCACGTGACTCGTAAAACATGGAAAAAGTTTCGCCCAAACGTGGCCTTACGAGCCTCTGCAGAACCCAAAGCCAAGCCTAGTTTGCTTGTTCTCTTCTCTATCCTCCATACCGATTGGCTCAAGAGATCCAAGACCCATCTCTCATTGGACCTAAATGCGGTAACCCATTTCTGATTTTTCGAGTTTCTCATTATTTGAGCTCGAGCTCGTAAATTTTTGTAATTTTTGATTGAGTATTGGGGGGTTTTATTGATTTATTTGAGATTTGGTTGATGGGTCTGTGGGGGTTTTCAATTGTCCATAACGTGGGTGCTGTAAAGTAGTGCTTGCTAGTTCAGATCAAGAACTTTCACATATGTTCATAAGTTCTCTTCACATTGCAAATACCTGCTAGAGAAAGTTGTTCTTTTGACATATATTTGTATTGGTTCTGTTTGATTGAAGTTAAAAGGGATATCTCTGAAACCCGTGGTAGTCACCTAGCCACCAGTGATCTAATGAAGCCTTTAACAAGTGATTCACTGTTATACTTATATGGGATCCATTCACACTGACTTGTCATTGTTAAGGATTATTTTACAAGGCAAAGCTGATAATTTCTTCTACTGAACTGGGTTTTCAATTTTTATGCGGTTTACAATGAGATGGGAACATATGTGGAT | |||||||||
gi|195222011|gb|FG497178.1|FG497178 030414KAWC010156HT (KAWC) Actinidia chinensis - active meristems Actinidia chinensis cDNA cl GTTGAGGATAGGGAGGAGGAC EST sequence (targeted fragment marked with yellow): AATTCCGCACGAGGCTAAAGCCCCGCAGATTATTGCTATTTCCAATACCATCGCAAGGCCACATCAACCCCATGCTCCAGCTAGCCAACAACCTCGACTCAACCGGAGCCTTCTCCTCCATCACCGTAATCCACCCCCACCTTAATTCCCCCAACCCTACCAACCACCCTCACTTCACCTTCCTCCCCATCCCCGATGGCCTCTCTGAGAATGAAGCTAGCACAAAAGATGTTGTCGCCTTTCTCTCTGTTCTCAACAGAAACTGTGCCGGGCCGTTCCGAGACTGCCTGGCGGAGTTGCTGGC | |||||||||
gi|195234349|gb|FG491696.1|FG491696 030217KAWC005463HT (KAWC) Actinidia chinensis - active meristems Actinidia chinensis cDNA cl GTTGAGGATAGGGAGGAGGAC EST sequence (targeted fragment marked with yellow): CGACAACTCCATCGATCCCCTCTCTGTCCTCAACAACAGCAAGACCAGCGAATTCTGCGCTCCTCTGACCTCCTTCGACTGGAACGAGCTCGAAACTCGTCGAATCGGAACTTCCAGCATCGACACGACCTGCACGATTTGGGATATCGAGAGAGGAATCGTTGAAACGCAATTGATTGCGCACGATAAGGAAGTTTACGACATCGCTTGGGGCGAAGCGGGGGTTTTCGCATCGGTCTCTGCAGATGGGTCCGTGAGGATCTTCGATTTGCGAGATAAGGAGCACTCAACTATCATATACGAGAGTCCGAGACCAGACACACCGTTGCTTCGATTGGCTTGGAACAAGCAAGATTTGAGGTACATGGCGACGATTCTGATGGACAGCAATAAGGTTGTGATATTGGATATTCGGTCGCCGACGATACCAGTGGCGGAGCTGGAGAGGCACCGGGCGAGCGTGAATGCGATCGCTTGGGCGCCACAGAGTTGCCGGCATATTTGCTCTGCAGGGGACGATTCGCAGGCGCTGATTTGGGAGTTGCCGACGGTGGCTGGTCCCAATGGGATTGACCCGATGTCCATGTACTCTGCTGGGTCT | |||||||||
gi|195266053|gb|FG503574.1|FG503574 030219KAVC001871HT (KAVC) Actinidia chinensis cell culture Actinidia chinensis cDNA clone KA GTTGAGGATAGGGAGGAGGAC EST sequence (targeted fragment marked with yellow): CGCTAAAGCCCCGCAGATTATTGCTATTTCCAATACCATCGCAAGGCCACATCAACCCCATGCTCCAGCTAGCCAACATCCTCCACTCCACCGGAGCCTTCTCCTCCATCACCGTAATCCACCCCCACCTTAATTCCCCCAACCCTACCAACCACCCTCACTTCACCTTCCTCCCCATCCCCGATGGCCTCTCTGAGAATGAAGCTAGCACAAGAGATGTTGTCGCCTTTCTCTCTGTTCTCAACAGAAACTGTGCCGGGCCGTTCCGAGACTGCCTGGCGGAGTTGCTGGCGGAGGAGGAGGGTGTGGCTTGTTTGATCACGGATGCGTGGTGGCTTTTTTCGCAGGCGGTGGCCGACGGCTTTGGGCTGCCGAGGATTGTGCTGAGGACTGGTAGTGTCGCTTCGTTTCTGGGTTTCGCTGCCTTGCCGCTTCTAAGGGAAAAGGGCTACCTCCCCAAGCAAGATTCCCAACTTGAAGAACCTGTGCCAGAGCTACCACCACTCAAAGTGAAGGACCTTCCCACAGTGACTACACACAACTCAGAGAATTTCTACAATTTAGTGGCGGCCATGGTGAAGGAAACCAAATCCTCTGCAGGGCTCATT | |||||||||