| mature miRNA: AGATTTTGGAGGGATGAGAGA species: Actinidia deliciosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|195288251|gb|FG403482.1|FG403482 000602KAAA001236HT (KAAA) A. deliciosa developing shoot buds Actinidia deliciosa cDNA clone AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): GCAGCCTTCCCGCAGATTCTCTTTCTTCTCTCTCTCTCTCTCTCTCTCTGAAATCTCTCTCTGCGTTGATCAGATCGATCTCTACGCTACGCATCCGAAGCGGAACCGTATAGTAACCATGACGCCTGGCTCAGGAGGATCGAGTGTCGTGGTCCCTCGAAATTTTAGATTGCTGGAGGAACTTGAGCGTGGAGAAAAGGGTATTGGAGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATCTACATGCGTTCTTGGACGGGAACTATTATTGGTCCTCATAATTCTGTACATGAAGGTCGCATTTATCAGCTGAAGCTTTTCTGTGACAAAGATTACCCAGAGAAGCCACCAAGTGTTCGGTTCCATTCTAGGATCAACATGACTTGTGTCAACCATGAAACTGGAA | |||||||||
gi|195249281|gb|FG431116.1|FG431116 010420KABA014010HT (KABA) A. deliciosa petal Actinidia deliciosa cDNA clone KABAA01401, mRNA AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): GATAATTTGCATTGGATTCTTGATATCTTGATTGATAGACAGATTGCGGAGGATTTTTTGAAGACATGGGCATCGCAGTCGGAATTGTCTGATGCACACTCTAAAGTCCCTGCTATTCATAGGTATGAGGTTAGCAGAGTGACTGCGAGGCTGTTTGTTGGAATTGGAAAAGGGCAGCTATTGGCTTCAAAAGAAGCGAGGTGCTTGCTCTTGCAGACTTGGTTGGTTCCATTTTATGAGGATTTCGGATGGATGAGAAGGGCATCGAAAGGCCTTGACAGGCATTTAATCGAGGATGGTCTTAGCAACACCATTCTGACTCTGCCTCTAGCTTGGCAGCAGGAGATTTTGATGTCTTGGTTCGACCGATTTTTGAACTCGGGTGATGATTGTCCGAATATACAGAGAGGGTTTGAAGTTTGGTGGAGGAGGGCTTTCTGGAGACGACACGGTGAGCCTGAACGGCCCCGGCAGATGCGGATCACCACTGCAAGTATTGAGAACTCGTGAAGTTTTGCAATTCTAAAATGAGGAGGATAATGTGGTACCTACGGTTTTACTTCTTTTATCCCTTTAAAATCACCTGGCCTCAATTACGATTTATGGTATTTTTGTCTTCTTCCTTTAAAAAAA | |||||||||
gi|195202884|gb|FG470366.1|FG470366 021008KALA012764HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAATCTGCGTTTCTAGTCTCCATTTTGCAGGAAATCATGGGCAAGGGTCCTGGGCTCTATACTGATATCGGCAAGAAAGCCCGAGATCTTCTCTACAAGGACTATCAGAGCGACCACAAGTTCACTATTACTACCTACTCATCGACCGGCGTTGCTATTACTTCATCTGCAACAAAGAAGGGCGACCTGGTTCTTGCGGATGTCAATACTCAATTGAAGAACAAGAACATCACAACTGATATCAAAGTGGACACAAACTCCAATCTCTTTACTACTATCACGGTGGATGAACCTGCTCCTGGGTTGAAGACGATCTTAAGCTTTAAAGTTCCTGATCAAAGGTCTGGCAAGTTGGAAGTTCAGTACTTGCATGATTATGCGGGGATAAGCTCAAGCATTGGACTGACAGCTAACCCCATCATCAACTTCTCAGGTGTGGTGGGAACTAATGTTGTTGGACTGGGGACTGATGTCTCGTTTGACACCAAGACGGGGTGCTTCACAAAGTGTAATACCGGATTGAGCTTCTGCAATGCAGACCTTATTGCTTCACTGACCGTGAATGACAAGGGTGACACTCTTAATGCATCCTACTACCATACAGTGAGCCCCTTGACAACACAGCT | |||||||||
gi|195240187|gb|FG437079.1|FG437079 010304KADA031364HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clon AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): ATTTGATCCTACTGCGCTCCAATCTCTCTCTATTTCTCTCTCATCCCTCCAAAATCTCTCACTGAAATTGCGTTTTCTAACACTAAAATTGGGTTTTCGATGAATATCAACCAAAGCTGTAATTCTCGAATTTGAAGATATATATAGATATACGTATACACGGAGGATATGTATAGGGATCGAGGAGGCGGAGGTGGGTCCTCGAAGGCGGAGATCGGCGGAGGGCCGTTGGATCGGAAGCGGATCAACGACGCGTTGGATAAGCACTTGGAGAAATCGTCGCCGTCCATTTCAAGGAACATCAAGGACAGAGAGAGAGTGTCTGTGCCGTCGACTTCTACCGGAAAGTCGCAGCATCAGCTCGATC | |||||||||
gi|195317806|gb|FG430266.1|FG430266 010421KABA015904HT (KABA) A. deliciosa petal Actinidia deliciosa cDNA clone KABAA01590, mRNA AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): AATTCGGCACGACGTGAGAGTCCATTTGGGTGCAACAAAATAAACCAATCTATCAGTTTCTCTCGAGACTGATAGATATGGATATAGAGTTTGATGAGTCCTTCAATGGGTCTTGAAAAGCAGGGCAATTTGGAGAGAGAGACTCTCTCTCTCCAAATTCAGACATCAGTTTGATTTGCTTAGCCATCAGTTAGATCTTCATCCAGATTCTGGCAATGGCGATGGCTAAGGCCTAGAAAACCGGCAAGTCACAGAACGGCAAGGGACTCTTATAAGTCTTGTATGGCTAGTTATTTTTCTATTTTATGGTGGCGGTGTATTAGTTTTTTTGCATGAGATTGTAATAAAAATGGGTGTTCTATGAATAAACTCAGCCAGACTTCTGTTGGGTTAGCATCTCTCTCTCTCTCTCCAAAATTTGCTTCTGGACATCTGTTTCTTTTGCAAGTAGAGAGAGAATTGGGAGGGAGAGCTTTGGGAAGGGAAAAGAGGGAATTGAGT | |||||||||
gi|195271774|gb|FG471545.1|FG471545 011124KALA001616HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme AGATTTTGGAG-GGATGAGAGA EST sequence (targeted fragment marked with yellow): CAAAAAACCAGTGAAACTAGTGCTCCAGAATTTTCTTGTTACATGAGACAACCCTATATTCTTGTGAACAACTCTGTCGTGGTGGTGAACTTTCTCCTAATTATGCTGTTTGTTGGGCAGCTAACAGCCAGATTTATTTTAGAGGATATTGTGTAATAGAGGTTTTCTGTAAACCCGTGGATAATTATTTCTAGTGTTGGGTTTGATCTGAAATCAGTAATCAGATTGATTTGTGGTTTTATGGAGGGGAACAGAAACATAAAGGAACATATAAAACAGTTGACTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGAGCAACGGCACAAAAATTGTACCCGAAGTGAACCCNAGAGAGAGAGAGAGAGAGAGAGAGTCTCCGAACTGGAGAGAGAAGGATTCCAGTGAATGGGGATATGGAGATCTTTTCTCATCCTCTCCAATATCTACAGATTT | |||||||||
gi|195255212|gb|FG417547.1|FG417547 000719KUBA014347HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01434, mR AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTGTTGTTGATATGGTTAGATGTGACTGGTGACTAGTCCTTGGGCACAACACTTTCACCCTCTTCACTTGAGTCTTTTGATTGACCTAGGGGAGGATAGTCTCTGGTGGGGTGGTTCTGAAAGGTATATTTTGAGGTTAAGTTCTTCTATGCGTGGAAAGGTCTATGGTCAGTTGGAGCTTCTTCCAAGACAGGGAAAGGGGGAACAGGGAGGTCTTGTCCCTCCAAAATTTTCAGAAACCTCTCATTTTACACACAGGATAGGTGGTGTTGCTACATTCATCTCTCATAT | |||||||||
gi|195284354|gb|FG411710.1|FG411710 021010KAAA012084HT (KAAA) A. deliciosa developing shoot buds Actinidia deliciosa cDNA clone AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): CTCTCTCTCTCCAAAATCTGCAATTGGGTATACTCATAAACTTCATAGACGCTCGAATTCGAGTTGATTACCAACAAAATTTGGTTGTTTTCTTCTTAAACCCAGTTTCATAAACATCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAGTGATGGAAGGTACCAAAAGAACCACAAACAGTAAACCCAGTTCAAGAATACCCAAATTACTTCCCCCAACTTTCTCTCTCCGGTCATCATGCCCAACCAATCGGCCTCCTGGTTCAATCCTGTTCTGAAACTGCTGTTATAGCTTATATTTTGACTCAAATCCTGGTAAAAAGATGGAGTTCTCGAGTTCTTTCGATGGGTTTTTGAAGAATCATGCATTTCAGGGGATAATAGGAGGTGGGTCATCGTCTTCTTCCTCTTTGGTGTTGGATGGTGAGAGGGGAGAGCTTGTGAAGGCTATGGTGAGGCCTTTGCAGAAGGGGGTAAAGGCTGATAAAGCATTGGAGGCTTTGAGGAACCACAGT | |||||||||
gi|195251096|gb|FG476776.1|FG476776 020909KALA007849HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): TTGAGGCCCAGAAGAGGAGAGAGAGGAGAGAAAGGAAGGAGGAAGGGTTTTTTTATAGGTACCATTTGCTCACACCCTTTTGAGGAAAAAGGCTGGTGATACACCGATGGGGCCACTGGCCATTTCTACACCACCTTTTGTTCTTATTCCCTGACCTTCAAGTATTTCTTCTCTTTCACTCCTACTCCTACTGCTATCTTCTCTCTCTCTCTCTCTCTATCTCTATCTCTCTCTTCTCCAAAATCTGGAGATACCCATTTGCCCCCTGAAGGGTCTCTACCAAACCCACGTGCAGGTTCTTACTTGTCGTCTGCAGGGTTTTGTTTAGATAAATTCTGCAATTTAGCATCATCAATGGGTTCTAGAGATTGGTTTAAGAATATTATACGCTCAAAGAAAGCAAAGGATGACATCTCAAAGGTATCTGCAGCACCTGATAAGTCAAACGGTGCCAAATACAAAAACAACTCTCAGAAAGCGTCTACCAAGTTTTCCAATGGGGCTTCTAATGGAAAACCCAGGTTTCTTGGTATGTCTGTTGACAACGTGGCAGCTACTCGGATTCAGACTGCA | |||||||||
gi|195229188|gb|FG441305.1|FG441305 010306KADA033200HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clon AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): GCGAAGGCTCCTCTCTCTCTCTCTCTCTAAAATCTTCATTGCTTCTCTCCCAATCTCAAAAATCCTATCGTTTCTCTGAAAACATCTCTTTCTCATCCTACATTCCCTACGTTCTCTCTCTGGAAAGCAATTTTTGTGATCTAGGGTTTTTGGTCATTTCAGATCTTGTATCCCATTTCCGATCTACGGTTTTGATTGGGGTTCAAGGGTTTTAGGGTTTGTCCCTTCCTACTTTCTATGGCGACTCCGTTTCACTTCCCCGTAACTGCGGCTCAGGTTGGGACATACTTCGTTGGGCAGTATTACCAGGTACTTCAGCATCAAC | |||||||||
gi|195274976|gb|FG447528.1|FG447528 010526KAEB001770HT (KAEB) Actinidia deliciosa dormant buds before hydrogen cyanamide treatme AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): GGGCCACTGGCCATTTCTACACCACCTTTTGTTCTTATTCCCTGACCTTCAAGTATTTCTTCACTTTCACTCCTACTCCTACTGCTATCTTCTCTCTCTCTCTCTCTCTCTCTTCTCCAAAATCTGGAGATACCCATTTGCCCCCTGAAGGTCTCTACCAAACCCACGTGCAGGTTCTTAGTTGTCGTCTGCAGGGTTTTGTTTAGATAAATTCTGCAATTTAGCATCATCAATGGGTTCTG | |||||||||
gi|195302039|gb|FG429522.1|FG429522 010422KABA018176HT (KABA) A. deliciosa petal Actinidia deliciosa cDNA clone KABAA01817, mRNA AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): GATAATTTGCATTGGATTCTTGATATCTTGATTGATAGACAGATTGCGGAGGATTTTTTGAAGACATGGGCATCGCAGTCGGAATTGTCTGATGCACACTCTAAAGTCCCTGCTATTCATAGGTATGAGGTTAGCAGAGTGACTGCGAGGCTGTTTGTTGGAATTGGAAAAGGGCAGCTATTGGCTTCAAAAGAAGCGAGGTGCTTGCTCTTGCAGACTTGGTTGGTTCCATTTTATGAGGATTTCGGATGGATGAGAAGGGCATCGAAAGGCCTTGACAGGCATTTAATCGAGGATGGTCTTAGCAACACCATTCTGACTCTGCCTCTAGCTTGGCAGCAGGAGATTTTGATGTCTTGGTTCGACCGATTTTTGAACTCGGGTGATGATTGTCCGAATATACAGAGAGGGTTTGAAGTTTGGTGGAGGAGGGCTTTCTGGAGACGACACGGTGAGCCTGAACGGCCCCGGCAGATGCGGATCACCACTGCAAGTATTGAGAACTCGTGAAGTTCTGCAATTCTAAAATGAGGAGGATAATGTGGTACCTACGGTTTTACTTCTTTTATCCCTTTAAAATCACC | |||||||||
gi|195274349|gb|FG466395.1|FG466395 011124KAKA001792HT (KAKA) Dormant kiwifruit buds one day before hydrogen cyanamide treatment AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): CGAAATTGGTGGAGAAGGCGAAGAAGGTAGTGGAGGAGAAGGTGGAGAACATTAAGAAGCCGGAGGCATGGGCGACCGGCATGGACCTGGCGGACGTTAGCAGTGACGCCATCACGTACATCGCCAAGGTCGCCGTCAAGAACCCTTACAGTTGCCCCATTCCCATTTGCGAGATCTCTTACTCTTTCAAAAGCAAAGGAAGGTTATCTTCCTCTCTCTCTCTCTAAGATCTAAACTTACGGCAAAATTGACAAGTTATGAGTCCAGCCTAATTTATATCGATAGTCTCAACGTTCATTTAGTAGAACTTATATATAATTATTTACAGTAATGGATCCATGATTCTTTCTAGATGGCTAACCTCTATAATTTTAAAATTATCTTTAAAAAATTTAAGAACTAATCTATAAAATTTTTGAATTATATTAAAATTTATAATATGATTAGTGATTTTTTTCAACTTTTGGTGCGATCGCCCTATCCAACCAGGGGCTAGGAGGGGCAGCCCCTCACTTTTAAAAAATTACAAAATTTGTTTTAGGTTTTTAATCTTTTTACATTTTAGCCCCTGAAATATATTATAAAAACTTTTTTTTACACTTTATAGCTTATTTAACCTAAAATCTTGG | |||||||||
gi|195291638|gb|FG471791.1|FG471791 011124KALA001897HT (KALA) Dormant kiwifruit buds three days after hydrogen cyanamide treatme AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): GGCCTCTCTCTCTCTCTCCTCCAAAATCCACCATTAACCTTCCAATCCCCACAAAATTTAGAGGAAGCTCTGCTATTAGAGACCACAAACCCTCTCATATGGAGTCGAGTTCTGGTGCTGGTGGTAACTCTAGTACTGTAAAAGGCGTGCTCACGCATGGCGGCCGATACGTCCGGTACAATGTTTACGGTAACTTCTTTGAGGTCTCCAACAAGTACGTTCCCCCCATAAGACCCATCGGAAGAGGCGCTTATGGCATTGTTTGTGCGGCTGTGAATTCAGATACACACGAGGAGGTAGCCATTAAGAAGATCGGTAATGCCTTTGACAACAAAATTGATGCCAAGAGGACACTCAGAGAAATTAAGCTTCTTCGCCACATGACTCATGAAAATATTATTGCCATCAAGGACATCATACGACCACCAAAGAGGGATGCTTTTAATGATGTTTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATAATTCGGTCTAATCAAGCATTGACGGATGACCATTGTCAGTACTTTCTGTACCAGCTGTTGCGTGGACTAAAATATGTACACTCTGCGAATGTTTTGCATC | |||||||||
gi|195252217|gb|FG403471.1|FG403471 000602KAAA001225HT (KAAA) A. deliciosa developing shoot buds Actinidia deliciosa cDNA clone AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): GCAGCCTTCCCGCAGATTCTCTTTCTTCTCTCTCTCTCTCTCTCTCTCTGAAATCTCTCTCTGCGTGGATCAGATCGATCTCTACGCTACGCATCCGAAGCGGAACCGTATAGTAACCATGACGCCTGGCTCAGGAGGATCGAGTGTCGTGGTCCCTCGAAATTTTAGATTGCTGGAGGAACTTGAGCGTGGAGAAAAGGGTATTGGAGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATCTACATGCGTTCTTGGACGGGAACTATTATTGGTCCTCATAATTCTGTACATGAAGGTCGCATTTATCAGCTGAAGCTTTTCTGTGACAAAGATTACCCAGAGAAGCCACCAAGTGTTCGGTTCCATTCTAGGATCAACATGACTTGTGTCAACCATGAAACT | |||||||||
gi|195240496|gb|FG396956.1|FG396956 000322KSFA002846HT (KSFA) A. deliciosa small fruit 13d post pollination Actinidia deliciosa AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): CCTGTTTATTTCCAGTTGTCCAAAGCTGGAGGCAGTGCTAGCAGAGGGGATGACAATTAATTGTCCATCTCTTGAAAAAATTATAATCAGATTTGTGATAACCTCAAAACCTTGCCCGATGTGATACAAAATCATGATCTCAGGAATCTCAATAGGTTGGCTATAACAGATTGTGATAATCTGGAATGTCTTCCGGAAGGATGGTTCCCCACAACCAATCTGGGGGATTTGATTATAAGCGGATGCAAGAAGCTCGATGCCAGGCCACAAAGTGCGTACAACAAGAACAGCAGCCTCACATCTCTCCGAAATCTGATCATAGGTTGTTCCCCTGCAGCG | |||||||||
gi|195258790|gb|FG442819.1|FG442819 001202KADA007555HT (KADA) A. deliciosa ripe fruit inner cortex Actinidia deliciosa cDNA clon AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): CCTTGCCGCAGATTCTCTTTCTTCTCTCTCTCTCTCTCTCTCTCTGAAATCTCTCTCTGCGTTGATCAGATCGATCTATACGCTACGCATCCGAAGCGGAAGCGGAACCGTATAGTAACCATGACGCCTGGCTCGGGAGGATCGAGTGTCGTGGTCCCTCGAAATTTTAGATTGCTGGAGGAACTTGAGCGTGGAGAAAAGGGTATTGGAGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATCTACATGCGTTCTTGGACGGGAACTATTATTGGTCCTCATAATTCTGTACATGAAGGTCGCATTTATCAGCTGAAGCTTTTGTGTGACAAAGATTACCCAGAGAAGCCACCAAGTGTTCGGTTGCATTCTAGGATCAACATGACTTGTGTCAACCATGAAACTGGAATGGTCGAACCAAAGAAGTTTGGAATTTTGGCAAATTGGCAGCGAGAGTGCACAATGGAAGATATACTGACGCAACTGAAGAAGGAGATGGCGGCTCCACATAACCGGAAGC | |||||||||
gi|195292839|gb|FG468422.1|FG468422 020213KAKA005726HT (KAKA) Dormant kiwifruit buds one day before hydrogen cyanamide treatment AGATTTTGGAGGGATGAGAGA EST sequence (targeted fragment marked with yellow): GTTTTGTTCGTTCTATTCAATCCCTTCTCTCTCTCTCTCTCTCTCTCTAAAATTTCAATCTCTATTTTATATTTATAAATCTCTATTTCAATGACACTTTACTATGTGTGATTTCACTGTGTAACGTTTATTGAAACCTGTCAACCAATAGAAATCTCCCCTGTTTTCTGGTTTTTATTATATTCTTTTCTGTGCTCACACACTCGTAATATGTTGATGATCTCTGACTTAATTACGTTTGATTTCGTGAATATTTTCCCGGATATTGATCAATATTTTCTGGGTTTCGATTAATTTTTTGTGGGTCGTGTTCGATTAGGTCCGTCATGGCGTCGATTGAGAACCAGAGCATCGAACCAGGCGATGACGAGATTAACAACAGCCACGACGATCTGTTGCCACTGGAATTTACCATCACGGCGGTTCCGTCGC | |||||||||