| mature miRNA: AGCTCGGTTCAGCTCGGTTAA species: Actinidia deliciosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|195262149|gb|FG449948.1|FG449948 010601KAFB002613HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGCTCGGTTCAGCTCGGTTAA EST sequence (targeted fragment marked with yellow): GAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAACCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTTAATCGAGCTCAGAACAACCTTCGTTCGCTTCAGTCCAGTTACACTTGGTAAAAAATGAAGTGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTNTACAAGTTAACTGGGTTCAATCG | |||||||||
gi|195238342|gb|FG449944.1|FG449944 010601KAFB002607HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGCTCGGTTCAGCTCGGTTAA EST sequence (targeted fragment marked with yellow): GAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAACCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTTAATCGAGCTCAGAACAACCTTCGTTCGCTTCAGTCCAGTTACACTTGGTAAAAAATGAAGTGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGC | |||||||||
gi|195194934|gb|FG413579.1|FG413579 000429KUBA003559HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA00355, mR AGCTCGGTTCAGCTCGGTTAA EST sequence (targeted fragment marked with yellow): GAGACAATGCATTCATCAAGATGGCTGACTATCAGAAATAGTTGGCGAAGTCTTTCAACCAGAAGGTGTAGCGTAGAGAATTTGGAGTGGGGGATCTCGTCCTTAGAAAGGTTGTTGGAAACACCAGAGACCCAACTGACGGCAAGTTAGGTCCGAACTGGGAGGGGCCATACAAAGTGATCAAACTAGCCGGGCGGGGTTCTTGCTACTTGGAGGACGCGGAAGGAAAAGAAGTTCTCAGACCTTGGAATGCCAACAACCTGAGAAAATATTTCCACTAGAACTTGTAATTCTGAACCGAATTTTGTTTTATGCGAAAAGTGATATGCTATCGAATTGCGCTTGACAAGCAACATATTTATACCTTCTTATTACGTAAAAACAGAAGTGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAG | |||||||||
gi|195301888|gb|FG415121.1|FG415121 000603KUBA010749HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01074, mR AGCTCGGTTCAGCTCGGTTAA EST sequence (targeted fragment marked with yellow): GAGACAATGCATTCATCAAGATGGCTGACTATCAGAAATAGTTGGCGAAGTCTTTCAACCAGAAGGTGTAGCGTAGAGAATTTGGAGTGGGGGATCTCGTCCTTAGAAGGTTGTTGGAAACACCAGAGACCCAACTGACGGCAAGTTAGGTCCGAACTGGGAGGGGCCATACAAAGTGATCAAACTAGCCGGGCGGGGTTCTTGCTACTTGGAGGACGCGGAAGGAAAAGAAGTTCTCAGACCTTGGAATGCCAACAACCTGAGAAAATATTTCCACTAGAACTTGTAATTCTGAACCGAATTTTGTTTTATGCGAAAAGTGATATGCTATCGAATTGCGCTTGACAAGCAACATATTTATACCTTCTTATTACGTAAAAACAGAAGTGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAGGAGTT | |||||||||
gi|195280399|gb|FG450287.1|FG450287 010601KAFB004068HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGCTCGGTTCAGCTCGGTTAA EST sequence (targeted fragment marked with yellow): GAAGGGGTTAACCGAGCTGGACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAACCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTTAATCGAGCTCAGAACAACCTTCGTTCGCTTCAGTCCAGTTACACTTGGTAAAAAATGAAGTGAAAGCTAGCCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAACCGAACTC | |||||||||
gi|195262356|gb|FG451073.1|FG451073 010602KAFB005013HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGCTCGGTTCAGCTCGGTTAA EST sequence (targeted fragment marked with yellow): CCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCACTCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCACTCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCACTCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAG | |||||||||
gi|195262356|gb|FG451073.1|FG451073 010602KAFB005013HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGCTCGGTTCAGCTCGGTTAA EST sequence (targeted fragment marked with yellow): CCGAACTCGAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCACTCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCACTCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCACTCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAACTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAG | |||||||||
gi|195245596|gb|FG449858.1|FG449858 010531KAFB003600HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGCTCGGTTCAGCTCGGTTAA EST sequence (targeted fragment marked with yellow): GGAGGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCACTCCAGTTACACTTGGTAAAAAATGAAGGGAAAGCTAGCCGAACTCGAAAAGGAGTTCCGAGCTTGTCCATTACTTTTTACAAGTTAATTGGGTTCAATCGCGAGAAGGGGTTAACCGAGCTGAACCGAGCTCAGAACAGCCTTCGTTCGCTTCAATCTAGTTACACTTGGTAAAAACTAAAGGGAAAGCTAGCCGAACTCGAAAGGAGTCCCGAGCTTGTCCTACATTATCCTATACTTTTTGTCGGCTCTATTTTATTTAATTTGAAGTCCAGATTGGTTAAATCAAGCTCGGTTCATGATTTTGAAGTCAGTTTGTTATCCAATTATATTTCGCGGAAGTGTAAATCA | |||||||||