| mature miRNA: AGGGTAATTTTATTATTTTTG species: Actinidia deliciosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|195194820|gb|FG397307.1|FG397307 000502KSFA005148HT (KSFA) A. deliciosa small fruit 13d post pollination Actinidia deliciosa AGGGTAATTTTATTATTTTTG EST sequence (targeted fragment marked with yellow): GTTCAACCGGTCGAACGTGTTCTGCGATAAAAAGGAAGTGTAGTAGGGAGGCAGATATGACATCCAAACTTGATTTATTCTCATACATATCAAGGTATATCTAGCCTCACGTGATTGATATTGTATGGTTTACATGGCTTTAAGATCTGGAGAAAAAAATATTAAAATTACGCTTATGTTCGCGGGATACAATCCTTTTTAATACTGATGGGAGGCTACGGAGGGAGAAATCAAGGTCAGGAGGAAATAGGAATCAACTAGGTAATCCGGGGAACAAAAGTGGGAGTGGGAACGATGAGAAGTTGGGGAGAGTTTTGCTCTTGTGCCA | |||||||||
gi|195293970|gb|FG448677.1|FG448677 010514KAFB001929HT (KAFB) Actinidia deliciosa buds 3 days after hydrogen cyanamide treatment AGGGTAATTTTATTATTTTTG EST sequence (targeted fragment marked with yellow): GATTCATTTTAAATAATTTGGGTGACAAATAAGTTTTCTCACGCAAAATAAATACATTAAGTGACGAAATAACTTTTCTCACCTAAACAATTACCTTTTCTGAGAAACAATTTTCATCACCTATTATTTTTAAAAACTTTGGGTGACGAAATAAGTTTCCTCACACAATCACCTTTATTTTGTGAGAATTTTTTTTGTCACCTATTGGTTTTAAGTTTTGGAGGGCAAACATTAGTGACGAAAAATAATTAAATCCTCACCTAAACTTTTTTCGTCCAATTATTTAGTGACAAAATTTTTGTTTTCCTCACTAATGGACAATATATGGTGACAAAAAAATTTTTGTCACCGTAAAAGGTTGTTCTCCCATAATTGATGACAAAATAAGTTTTTTCTCACAAAATATGCATATTGGGTGACGAATTTTACCTTCGTCACGGGCATTTCGTCACTGTTTCACATTTTTGTTGTAGTGGTACCCTTCAATTCATCTAACAACACATCTATCGTAGGAATAAAAAAATTATCTTTGATAGTGATGGCATTAAGTGCTATATAATCGATACATTAAT | |||||||||
gi|195217963|gb|FG417698.1|FG417698 000719KUBA014947HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01494, mR AGGGTAATTTTATTATTTTTG EST sequence (targeted fragment marked with yellow): TGGGCAAAAAAGTACTTTGAAATTGTGTTATTCTTAAAGTATCTTTACAATACCCATAAATAATTTAAATAGAAAGGAATGCACACGAAATTCACATGCTTGTTTGATATATATGCAAAAAAAATTTTACATGCTATTTTTAGGGACTAAAGTGAAACTTTCATCAAACTACAAGGACTAATAATAAAAAAATTACCCTATAAAAAGACACTTTATATGCAAATAGTTAACAAGTATTGACGGATAAACTATTTTATAACTAAATTAAAACTATAAGCTACCAATTATTCAAATTAAAGCTGTAAGGACCAAAACTTTAGTTAAACTACAATTTTTTGCTTTTGCATT | |||||||||
gi|195275222|gb|FG429629.1|FG429629 010422KABA016344HT (KABA) A. deliciosa petal Actinidia deliciosa cDNA clone KABAA01634, mRNA AGGGTAATTTTATTATTTTTG EST sequence (targeted fragment marked with yellow): AAATCTAGATTCTAGACAACTAAAGAAACATATACCAAAAAACCTAGCCTAAATAGGAATTATATGGACCAAGTTATTAAAGAAATAATTTTTTTCTAAAACGGTAAAATTGCCCTTTTCGAGGCCTAAACGATGAAATTTACCCGAAATCCGACCTTGGTCATGGCAAGGTCTTGCTAGTTTGGCTGTTTCCCATCAGACTAGGGTCTTCCGGTCCAAATTTTATGGAACTCCAAATATGAATGGGACCGATCTGCATCATTCTCTTCGGGTTGAAAAAACTCGTCCTCGAGTTTAGATTCTGAAGACGTACTCTGAATTTTTCAACCTTAGTCACAACCTCCATCCAATTTGTCCATTGAGTCAAAATAAAATACTCCATAATCAACTTTTTGATAAACCAAGAAGAAGACTTGGTGCCTACAAAATTGAATGGATCTTCATAGTAATAATTTTCTTGGAAGTCTTCAAAGAAATCAACTCGAAGCATCTCTTTTCGCAAATATAATTCCTCACCATCTTACATTTTAGTTTCTTCTTCATATATATTTCTTCTTAAAATAGTTTTTGCTCAA | |||||||||
gi|195254227|gb|FG417522.1|FG417522 000719KUBA014283HT (KUBA) Hayward breaking bud Actinidia deliciosa cDNA clone KUBAA01428, mR AGGGTAATTTTATTATTTTTG EST sequence (targeted fragment marked with yellow): TGGGCAAAAAAGGTTTTTGAAATTGTGTTATTCTTAAAGTATCTTTACAATACCCATAAATAATTTAAATAGACAGGAATGCACACGAAATTCACATGCTTGTTTCATATATATCCAAAAAAAATTTTACATGCTATTTTTAGGGACTAAAGTGAAACTTTCATCAAACTACAAGGACTAATAATAAAAAAATTACCCTATAAAAAGACACTTTATATCCAAATAGTTAACAAGTATTGACGGATAAACTATTTTATAACTAAATTAAAACTATAAGCTACCAATTATTCAAATTAAAGCTGTAAGGACCAAAACTTTAGTTAAACTA | |||||||||
gi|195295147|gb|FG428754.1|FG428754 010423KABA015694HT (KABA) A. deliciosa petal Actinidia deliciosa cDNA clone KABAA01569, mRNA AGGGTAATTTTATTATTTTTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTAAAAAGAGGGCATATAATATATTATATATCATTAATCATATAAAAACTCTTGCAATAATCAAGCTGATTTTTGGCTAATAAAATTAATAAAATTATCTAAAGCAGCCTCAGAACTCGCCGGAAAACCGTGCTTGAACTTGCCGCCCAATGCGACCGCCCTCTTGTGCACCTCCTCGTCGGTCACTAGCCTCTCAATCCCCACCACAATGTCCTTCTCCACCACTTTATCACCACCACTTGATACCATGTACCCCACTTTTAGGTGGTGCACTACCAACTTGGCATTGAAAAATTGGTCACCCCTAATCGGCCACGCCAAAAGTGGGACCCCACGCCCGATCGCCTCCACAGTCGAATTCCACCCGCAATGCGATAAAAACCCGCCTGTGGATGGGTGGCTCAGTATCATCAATTGTGGTGCCCATCCGCGTATTATCAAACCCCTATCTCCAACTTTAGTATCCAAGCCATGAGGGTAGTAACTTTCTTCTGATGGATCCGAACAGGGTTGAGGTGGCCCGTGCCGACCCGACCCGGGTTGAATCACCCATATAAATGGCCACTTGGACTCTCCTAAAGCACCAGCTAATTGAACATATTCC | |||||||||