miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CCTCTTCCTCTTCCACTTCGA
species: Allium cepa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|34469318|gb|CF446616.1|CF446616 EST682961 normalized cDNA library of onion Allium cepa cDNA clone ACAIA69, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||.||||||||| |.|||
GGAGGAGGAGAAGGCGGAGCA

EST sequence (targeted fragment marked with yellow):
AAAACCCTAAGCCATGTCGACGCCCCGACAGCTCCGAACTCTGTCTCGCTACCTCCGCCCTCTTCTCTGTTCCTCCTCTGAAGTCCCCAAACACCAAACACTAACTCTCCGATCTATCGTAAGCACTAATGTCATCGCCACTAGAATCACTCCCCACTTCCAACCCATTTGCAGTCGCCACTTCTCTTCGGATCCTACCAACCCATCATCTGAAGACGACGACGACGATGACTTGGACGAAGAGGAGGGAGACGAGGACGAGGCGGAAGAGGAGGAGGATGACCTGGAGGACTGCAATGGATCCGTGAGGAAGTTTAAAGTGAGTGGGAAGAGTAAAGAGGAGAAGATAATCGAGGCGCAGGAGATTGGATATAGAGTGGTCGGACCGCTGGGGGATGATGAGCGACCTTTCAAGCCATATGAACCAGCCGTTTGCCGTGGTTCAGATTGGTTCGCATCAGTTTAAAGTTAGCAATGGGGATTCAATTTTTACGGAGAGATTGAAATTCTGCGAAGTTAATGACAAGTTAGTGTTGAACAAGGTTCTAATGCTGGGGTCACAAACACAAACAATCATTGGAAGACCAATATTACCAGAGGCCGCTGTCCATGCCTGTTGTTGAAGAACATGCTTTAGACGCAAAGGTGATCATTTTCAAGAAAAAGAGACGGAAAAATTACCGTAGAACAAAAGGTCATCGCCAGGAATTGACAAAACTGAGGATCACAGACATACAAGG



gi|34460112|gb|CF437422.1|CF437422 EST673767 normalized cDNA library of onion Allium cepa cDNA clone ACADT24, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||.|||||||||| | | |
GGAGGAGGAGAAGGTAATGGT

EST sequence (targeted fragment marked with yellow):
GCTCCAAATAAAAAATAAAAACGTCCCCTTTTCTTTCGATTTCAAACCCTAGCCCCAACCTCAGTTCGAGAATTACTCAGTTACAGCAATGGACAGACCACCTCCACACCACCGGGTTAACGACCGACCGAATGGAGGCAGCGACCATATCGTCGTTGGAGGTGCTGGAGTCGGAGATCACAGAAGAATGCCTACTTCACGGTGGTCCAACGACAACCCTAGAGGCGGCGGTGGAGATTTTTCCGCAGGCGGCGGCGGAGTTAGATTTCATCCGTATCAGAAGCAGGAGTTTGGTGGTAATGGAAGAGGAGGAGGGTTTCATGGTGGGCCGGACGGTGGTGGGTATGGTCCAATGGGTGGTCCCAAGAGAGGATTTCCTGGTAGAGGAGGTTTGTCTCCCGATTTTGCGGGTGGAAACAAATTTATAAAACTCTTTGTTGGATCTGTTCCAAGGACAGCGACTGAAGAAGATATCCGCCCCTTATTCGAGGAACATGGCAATGTCATCGAGGTGGCTCTGATCAGGGACAGGACGACTGGACAACAGCAAGGTAACTTTCAACGTTCTCATGAATCATCATGATTTGCAATTTTCTGTCTTCCAGGTTTACTGATGATTCAAGAAGCAGTATGGCATTTGAGTGATACGCTTCAAATATTTTAGTATTGGT



gi|34474475|gb|CF451773.1|CF451773 EST688118 normalized cDNA library of onion Allium cepa cDNA clone ACAEN17, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||| ||||||||||. | |
GGAGACGGAGAAGGTGGCGGT

EST sequence (targeted fragment marked with yellow):
GAGGAGGCCGAGGTGGTAGAGGAGGAAGAGGTGGAGGTGAAGGCCGAGGTGGATTTGGCGGTGGAAGAGGCAGAGGAGCTGGTGGACGTGGAGGTGGCAGAGGAGCTGGAAGAGGTCGTGGTGGCGGTCGTGGTGGAGGAATGAAGGGAGGAAGCAAAGTAGTTGTTCAGCCACATAGACATGATGGTGTTTTTATTGCCAAGGGAAAGGAGGATGCACTTTGTACAAAGAATATGGTTTCTGGAGAGAGCGTCTATGGGGAGAAGCGCATATCTGTGCAGAATGAAGACGGAACAAAGGTGGAATACAGGGTTTGGAATCCATTTAGGTCCAAGCTAGCAGCAGCTATTTTAGGTGGTGTTGACAGGATTTACATTAAACCTGGTGTTCGTGTTCTTTATCTTGGAGCTGCATCAGGAACTACAGTTTCTCATGTATCTGATCTTGTTGGACCAACAGGAATGGTATATGCTGTTGAATTCTCACACAGAAGTGGAAGGGACCTTGTTAACATGGCAAAAAAGCGAACCAATGTCATCCCCATCATAGAAGACGCAAGGCATCCTGCAAAATATAGGATGTTAG



gi|34473145|gb|CF450443.1|CF450443 EST686788 normalized cDNA library of onion Allium cepa cDNA clone ACADD18, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
|||||||||||||| |.||
GGAGAAGGAGAAGGAGGAGGA

EST sequence (targeted fragment marked with yellow):
GAAAAAATTTAGTGGTCAAATCTCAGTTCGAGCTCATTTCCCCCGTCAAAAACCAAACTTGGTGGCAAAGATTGTATACTCGACTTATTGATTTTGCTCTATGGATATTGATTTGAATATGATGGAAGAGGAGGAGGAAGAGGAAGAGGCTGAAGCACCTGCTGTTTGTTTGGAGTTGTGGCATGCTTGTGCCGGCCCTTTGATTTCTTTGCCTAAAAAAGGAAGTGTTGTGGTTTATTTGCCACAAGGCCATATTGAGCATTTGGGGATTAATGTTTCTAGTAATAACTTTGAGGGGTTTTCTTGCAATGTACCTGCTCATGTCTTCTGCCGTGTAGTTGATGTCAAGCTTCATGCTGATGCTGCTACTGATGAGGTGTTTGCTCAACTCTCTCTTGTTGCTCAAGGAAAGGATATTGAGCTACATATGAATGAGAGCGAAATCGAAGAAAATGGAGTTGAAGAGTTAAACGGAGAGAATAGATCATATTTGATGCCGCATATGTTTTGCAAAACTCTTACTGCTTCAGACACGAGCACTCATGGTGGATTCTCTGTGCCTCCAAGAGCCGCCGAAGAATGTTTCCCTCCTTTGGGATACAAACACAAAGACTTTCGCAGAGCTGTTGCTAAGATTTGCATGGGACAGAATGGAAGTTAAACATATATATCGAGGGACACACGCAGA



gi|34465482|gb|CF442780.1|CF442780 EST679125 normalized cDNA library of onion Allium cepa cDNA clone ACAHG08, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
|||||||||||||| ||.|
CGAGAAGGAGAAGGTACAGTT

EST sequence (targeted fragment marked with yellow):
ATTAAATACCTTTGCACTCTGTCTGATCACCTTCACAGCCTTGCTTAGATTCCTTTTCTCTTCTCTATTTCTTCTTCTTCTTTTTTTGACATGGAAGAGGAAGAGCTCAATATAGAAGAAGATCAAGAAAATTGTAGCATCTGTTTCATCATACAATAAACAAAAGAGGATAATAGAGAGTTCAAAAGGAAAAAAATGGCTAGTTTAAGTCCTCAACAACATAGATCAAGATTTGGGGATACCACTTTGACTAAAGTATTTGTTGGAGGACTGGCATGGGAAACTCCTACAGAAGTCTTTCGAAATTATTTTGAACAATTTGGAGAAATACTTGAGGCTGTTATTATCACTGATAAGAACACTGGAAGATCAAAAGGCTATGGCTTTGTGACATTTAGAGACCCGGAATCAGCAAGAAGATCAGTAGCTAATCCAAATCCAGAGATAGATGGAAGGAGAGCAAACTGCAATATTGCATCTCAAGGTCGACCACGGCCTGACCCACCCAGAGTAAGAAATCAATCAATAGGAGGTGCAGAACAAGGCCCACCAGCACATGCTTCTGGCCCGTCATACAGAATGCGAGCTCAGATGCCACCTCCACCTCAATTTTATTACTCTACTCAATATGGGTACATGCCTTACCCAAGTGGGTATGGGATACAACAGGAATGTATTACCCTCAAATAGCAGCACAATACTACCAACAATATTATGCACAATCTTCGACTTCCAGCGGTGGGCCTCAGCCATATCCATACCCTTAT



gi|34460424|gb|CF437734.1|CF437734 EST674079 normalized cDNA library of onion Allium cepa cDNA clone ACAEB42, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||.|||||.||||| ||||||
GGGGAAGGGGAAGGGGAAGCT

EST sequence (targeted fragment marked with yellow):
CAAGGCGTTCTTCAGGAGACTGTATCTACTAAGAAATTTGGTCCGGATAGGAAGAGGTTCGAGCATCTGGCGTTTTTGAATCTAGCGCAGAATGTAGTCTGCTTGATTTGGTCGATTATTATGTTGACAATTTGGCCAAGTAATTCGAAGGGGAAGGGGAAGGGGGCACCTTTGCGAAGCTATTGGCTAGCAAGCATTTCAAATACGGTTGGTCCAGCAATGGGTATCCAGGCGTTGAAATATATTAGCTATCCAGCTCAGGTTTTGGCAAAATCATCAAAGATGATTCCTGTTATGCTTATGGGTGCTTTTTATTATGGAGTCAAATATACATTGCCTGAATATGTATGCACCTTCCTTGTTGCCGGCGGAGTTTCTGCATTTGCGTTGACAAAGACCAGTTCAAAAACCATGAGCAAACTTGCTCACCCAAATGCTCCTCTTGGCTATGGGCTATGTTTTCTGAACTTAGCACTTGATGGCTTCACAAACTCTACACAGGATTCTATTAAAGCACGGTACCAAGAAACAAGCGCATGGGAAATAATGCTAGGAATGAATCTATGGGGAACCATATACAATGTCATATACTATTTTGGCTTTCCCAGAGCTGGTGGATTTGAGGCGATTAAATTTTGTCAAGAACACCCTGAGGCTGCATGGGATATCCTATTGTTTTGCCTATGCGGAGCAGTTGGCCAAAATTTCATATTCCTTACAATTACCCGATTTGGTTCACTTGCTTACACTACTATAAACACCACACGCAAGGTTGGTTA



gi|34466627|gb|CF443925.1|CF443925 EST680270 normalized cDNA library of onion Allium cepa cDNA clone ACAHR23, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||||||||||| ||||.
GGAGAAGGAGAAGAAGAAGTA

EST sequence (targeted fragment marked with yellow):
ATTTCTGCTTACTGTTTACATTTGTTTATCCGCTGAAGATGAGTAAACAAGATGATGCAAATTTCCTCAAGATACAAACTTGTATTCTTAAGGTGCACATACACTGTGATGGATGCAAGCAAAAGGTCAAGAAACTCCTTCAGAAAATCGACGGTGTATACACAGTGACGGTGGATGCAGAGCAAGGAAAAGTGAATGTTTCAGGAAACGTTGATCCAAACATACTAATAAAAAAACTAAGTAAATCTGGCAAACATGCAGAGCTTATTTCACCCAAAATCAACAGTAACCCAAAAACAGCTGCTGCTAAGCAAACTAATAATAATGTTAAGCCACAGAATCAGAAGGGTGGAAATGTAATTAATGGCGGAGGAGGTGTAAAAGACCAAAAAGCCCAGACACAGATGAAGGGGCTCAACAAAGATGTGAAAGTTCCACAGTTGCCAGTGCAGAAAGATCCAAAATCTGTCAAGTTCGCTCTGCCTCCTGAAGACGAGGACAGTGAGTTTGATGATGAATTCGATGAAGAAGAAGAGGAAGAGGAAGATGATT



gi|34459160|gb|CF436470.1|CF436470 EST672815 normalized cDNA library of onion Allium cepa cDNA clone ACACG76, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||| ||||||||||| | |
GGAGATGGAGAAGGTGATGAT

EST sequence (targeted fragment marked with yellow):
CGAGCAGCTAAAAGCCATCAAAGCAGAAGGTTAGGGCAAACAAAAAACGTAAGCGGCGTTTATCCTGGAAGTGACTTAAATAGCCATGGATGTTCTTAATCGCAAGGATTTTGATTGACTAATTAGTTGAAAAGAAGAAAAAGAAGAAAACATGCGAGGTGGTAGATCATATGAAGGTAGTAGTGGAAGAGGTAGAGGTAGAGGAAGAGGAAAGCGAAGTGGAAGTGGTAGGGGAGATGTTCGAAATCGTTCTCCATTTCGTCCAAATTATAGAACTTCAATTTCACCCCCATACAGGCATCACCCTCCCAGAAGCATAAGTCCAATCCCTAACAGACGTGGTCCACACCGAAGCAAAAGCCCTACTTTTAATAGACGGGCTTCTCGCTGCAGCCCTCTTTCTGATAGACGGGGTCCACCTGGAAACTTCAGTCCTCCTGATAGGCGTGGACCATCCAGAAACATCAGTCCTTATGATAGACAAGTGCCACTTAGAAACATCAGTCCTGATAGAAGGGGACAACCTAGAAACTTCAGCCCTCTTCCCATCGCTCATGGGCCACCCAGAAACTTAGGCCCTGTCCCTATTCATAACAGGCGTATTCTTCCCAGAAGCATAAGCCCTGTTCTCAATAGGCATGTCCATCCAAGAAGCAGAAGCCCTATTCGTAACAAGCATATGTCTCCTGGGAAGAGCATAAGCCCTATTGTTGAAAGGGGAGGGCCATTAAGAAAACATTAGCCATTGCGTAACAGACGAAGGTCACAGAGAAGCCGCTCAC



gi|34467637|gb|CF444935.1|CF444935 EST681280 normalized cDNA library of onion Allium cepa cDNA clone ACAGW88, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
|.|||||||||| ||||||
CGGGAAGGAGAAGAAGAAGCT

EST sequence (targeted fragment marked with yellow):
AAATCTTTCCTCAAAATTTAAAACATTAAATTCGAGCCATTTCTCCCAAAGAACCCTACTATTAGGGTTTCAAGTTAATGCTACTAACAATGAAGAAGCGGAAAAGATTAAAATCGAAGAAGAAGAGGAAGGGCGGGGGGAGAGCACAATGCCAGAGAGGTTTCGCTATCTTACTAAAGAAGCTCCTGATCCTCCTGTTCGATGGCCTTGGGCAATTGCATTAGCGCTACTCGTGTATTGCTGGCGTACTGTATTATGGGAACTCTCAAACTGGAAGCAAGGAGCACTAGCAGTCTTACGCTTCTTTGGTTACTTATCCAAGCTATCCCTAGCATTTGTATTCCATTTTCTTGGTGACCCGATCACTGGACTTATAAGAAGTATTGAATTTTGTCTCTATTCTATCCACCACGTTTACTCAAACATCGTAGCTTTCGCTCCTGTTCCAGAATTAACAAGAATCATTTTATTTACATCTACAATACTATCCATAGCAGAAGCTATAGTTCCTGAATCAGTCAGCAGTCAACCATATCTTCTTACTATTGCTGGAATAGTCTCATTTGGTGCTGTTAATGGCATCATTCTTGAGCCATTCTTTTATGTAATTCTATTTTGGTATGGTCTGCTATTCAAGGTTTATTAAGAAAAGAGATGTTGTTTCTGCTACGTTACCATTTGCAGCAGCAGTAACGGCAATAGGAG



gi|34463120|gb|CF440430.1|CF440430 EST676775 normalized cDNA library of onion Allium cepa cDNA clone ACAFK38, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||||||||||| ||||.
GGAGAAGGAGAAGTAGAAGTA

EST sequence (targeted fragment marked with yellow):
CGGTCTTCTTCCTATACTAGTGAAGATAGTGAAGAAAAAAACAGATTTGCCGGTTAGGGAGAGGATATTTCTTTTATTGGATGCTACTCAGACCTCTGTTGGTGGTGCCACAGGAAAATACCCTCAGTATTACGCTGCATATTATGAGCTGGTGGCAGCAAGAGTTCAATTTCCAGATCGTCCTAAGGTTCCACCACCTGAACCATCTCCTCCTAGGTTGCAAGTAAAAAATATTCCTGCTCAAGAACCCATTAAACAAAATGGAGCCATTGAAAAGCCACCTTCTCAGATTGTAACTGATGCAAGTGTGACCGAGAAGGCTGCCAGTGTCTTAGAAATATTGAATGAAGTTCTCAATGCCATGGATCCCAAAAACCCTGAGGGAGCATCTGATGAATTTGTCTTGGACCTTGTGGAACAATGTTCGTTTCAAAAGCAGCGAATCATGCATCTTGTAATGACCTCTCGGGATGAAAAGATGGTCAATCAAGCAATTGAACTTAATGAACAATTACACAAGGTATTAGTACAACATGATGCTCTCCTTTCAGTGTGTGCTGGTTCAAAACACATTTTCATGTTAATGGTAAAGATGAAGATGAAGAGGAAGAGGATGAAGAGCGCTTTTACTTGAGGTTACGGAAGGGAA



gi|34467253|gb|CF444551.1|CF444551 EST680896 normalized cDNA library of onion Allium cepa cDNA clone ACAGV75, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||||||||||| ||||.
GGAGAAGGAGAAGAAGAAGTA

EST sequence (targeted fragment marked with yellow):
CAAAAACAGCTGCTGCTAAGCAAACTAATAATAATGTTAAGCCACAGAATCAGAAGGGTGGAAATGTAATTAATGGCGGAGGAGGTGTAAAAGACCAAAAAGCCCAGACACAGATGAAGGGGCTCAACAAAGATGTGAAAGTTCCACAGTTGCCAGTGCAGAAAGATCCAAAATCTGTCAAGTTCGCTCTGCCTCCTGAAGACGAGGACAGTGAGTTTGATGATGAATTCGATGAAGAAGAAGAGGAAGAGGAAGATGATTTGGATGATATGGATGGATTTGATGATGATTTTGGCGACAATATCAAGAATTTGAAGACTAAACCTGCAAATAATGGCAACAACGCAATGAAAAGTGGAGGCAACCAGAAGAAGGCCGAGGTTCCTGTTCAGGTCAAGGGCATAAATGGAAACACTAGCAAAAAAGGCGGAGCTGATGATGGCGGCGGTGGTAAAAATGGCAAGGGTAACATCAAGAGTGCACCAAATGGTAAGAACAATGTGGGTCAACCTCAAATGGCCCCTGTGGGTCCACCCCAAATGGGCCAGATGGGCCCAGCTCAAATGGGTAACATGCTGCCACAGGCAGCGGTCCAGGGCCTGCCAGCAGGCGCTGTGGTGACACCTGGCTATTTTCAGGGGCAGGTGGCGGCACCAAATCCTTATCAGCAGCAGCAGTACATGCAAGCAATGCAGCAGCAGAGGATGATGATGATGAATGGTCAGGATCAGATGCATCCGATGATGGGGTATCCTAAAGCACCGCCTTATGCTATGTACATGCAGCCGCCACCACAGAACGTGCAGTACGCAGA



gi|34471171|gb|CF448469.1|CF448469 EST684814 normalized cDNA library of onion Allium cepa cDNA clone ACABN09, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
|||.||||||||| |||| |
AGAGGAGGAGAAGGAGAAGGT

EST sequence (targeted fragment marked with yellow):
CGAAAAAGCATGCTCCGACGCAAACCGAGCAAAATTGAAGTAAATCTCGACGAAGACAAAAAGGAGCTCCTTCTCCACCTCTCCGAGTCTCAAAACCGTCATTCAAACCCCAACCCTAATTCCCAAAACCCTACTAATCCCCTCTATAATCTCATCAACCCCCCATCCTCCTCCGCCAAATCCGCTCGCATCGGCCTCTCCAAACCCTAGCTCCCATGGAGGTCGAGATCAAGCTCCGCCTCCCCTCCTCCGCCGCCCACCAGCTCCTGTCTGACGCTCTTTCTCCCTTCCACGTCAAAACCCACCTTCAAGAAAACACCTTTTTCGACACCACGTCTGACAACCTCGCATCTTCCCGTGCGGCACTCCGAATCCGGTTCTATGACTCGGATTCCAAATGCGTGCTTTCGCTGAAAGCCCGTGCTAAGCTACAGGACGGCGTTAGCCGCGTGGAAGAGGAAGAGGAGGAGATCAGCCCGTTGATTGGGCGTGAAATTGTAAGTAATCCTTCCAGGATTTTAGATTTGTTGCCCGAATCTAAGATCATGAGGAGGGTTGAAAGCGAGATTGGGATTGATGGAGAATTTGTCTGTTTGGGTGGGTTTAGGAATGTGAGGGCTGTATATGAGTGGGTGGAGGGTTTAGTGTTGGAGTTGGATGAGACGAAGTATGATTTTGGGACAAGTTATGAGATTGAGTGCGAGACTATGGAGCCGGAGAGGTTTAAAGGGTTGAATGAAGGGGTCTTGAAGGAG



gi|34474023|gb|CF451321.1|CF451321 EST687666 normalized cDNA library of onion Allium cepa cDNA clone ACADO66, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||||| |||||| |.|| |
GGAGAAGAAGAAGGAGGAGGT

EST sequence (targeted fragment marked with yellow):
CTTCTCTCTTATTCTTTGCTTCCAAGGAGAGAGAATATGGCGAGTGGTAGCAATCATCAGCATGGTGGAGGAGGAAGAAGAAGAGGCGGAATGTTAGTCGCTGCGACCTTGCTTATTCTTCCTGCCATTTTCCCCAATTTGTTTGTTCCTCTTCCCTTTGCTTTTGGTAGTTCTGGCAGCGGTGCATCTCCTTCTCTCTTCTCCGAATGGAATGCTCCTAAACCTAGGCATCTCTCTCTTCTGAAAGCAGCCATTGAGCGTGAGATTTCTGACGAACAAAAATCAGAGCTGTGGTCTCCCTTGCCTCCACAGGGATGGAAACCGTGCCTTGAGACTCAATATAGTAGCGGGCTACCCAGTAGATCGACAGGATATATTCAAGTTTTTCTTGATGGTGGGTTGAATCAGCAAAGAATGGGGATTTGTGATGCTGTTGCTGTTGCAAAAATTTTAAACGCAACCCTTGTAATACCGCATCTTGAAGTGAATCCAGTTTGGAAGGACTCCAGCTCATTTGAAGAAATATATGATGTGGATCATTTTATCAATGTCTTGAAAGATGAAATCAACGTAGTCCGCACTCTACCTGATGAGTATTCATGGAGCACAAGAGAGTATTATGCCGTTGCTATTCGAGCTACGAGAATTAAAACTGCACCCGTCCAGGCTTCTGGCAACTGGTATCTGGATAATGTTACTCCTGTATTGGAGAGCTATGGAATAGCAGCCATCGCACCCTTTTCGCATCGCTTGGCTTTTGATAGCTTGCCTGCAGATATT



gi|34472698|gb|CF449996.1|CF449996 EST686341 normalized cDNA library of onion Allium cepa cDNA clone ACADA21, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||.||||||||| |.|||
GGAGGAGGAGAAGGCGGAGCA

EST sequence (targeted fragment marked with yellow):
GCAAAAACCCTAAGCCATGTCGACGCCACGTCAGCTCCGAACTCTGTCTCGCTACCTCCGCCCTCTTCTTTGTTCCTCCTCTGAAATTCCCAAACACCAAACACCAACTCTCCGATCTATCGTAAGCACTAATGTCATCGCCACTAGAATCACTCCCCACTTCCAGCCCATTTGCAGTCGCCACTTCTCTTCGGATCCTACCAACCCATCATCTGAAGACGACGACGATGACTTGGACGAAGAGGAGGGAGACGAGGACGAGGCGGAAGAGGAGGAGGATGACCTGGAGGACTGCAATGGATCTGTGAGGAAGTTTAAACTGAGTGGGAAGAGTGAAGAGGAGAAGGCAATCGAGGCGGAGGAGATTGGATATAGAGTGGTCGGGCCGCTGGGGGCTGATGAGCGACCTTTCAAGCCATATGAACCAGCGTTTGCTGTGGTTCAGATTGGTTCGCATCAGTTTAAAGTTAGCAATGGAGATTCAATTTTTACGGAGAGATTGAAATTTTGCGAAGTTAATGACAAGTTAGTGTTGAACAAGGTTCTAATGCTGGGGTCACAAACACAAACAATCATTGGAAGACCAATATTACCAGAGGCTGCTGTCCATGCTGTTGTTGAAGAACATGCTTTAGACGCAAAGGTGATCATTTTCAAGAAAAAGAGACGGAAAAATTACCGTAGAACAAAAAGTCATCGCCAGGAATTGACAAAACTGAGGATCACAGACATACAAGGCATACCAAAATCTGAAGGTTTAGCTGGTGCTGCTTGATATTTTTTTCCCTACATTTGCTTGGATTTC



gi|34471171|gb|CF448469.1|CF448469 EST684814 normalized cDNA library of onion Allium cepa cDNA clone ACABN09, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
|||||||||||||||| . |
GGAGAAGGAGAAGGTGCGCCG

EST sequence (targeted fragment marked with yellow):
CGAAAAAGCATGCTCCGACGCAAACCGAGCAAAATTGAAGTAAATCTCGACGAAGACAAAAAGGAGCTCCTTCTCCACCTCTCCGAGTCTCAAAACCGTCATTCAAACCCCAACCCTAATTCCCAAAACCCTACTAATCCCCTCTATAATCTCATCAACCCCCCATCCTCCTCCGCCAAATCCGCTCGCATCGGCCTCTCCAAACCCTAGCTCCCATGGAGGTCGAGATCAAGCTCCGCCTCCCCTCCTCCGCCGCCCACCAGCTCCTGTCTGACGCTCTTTCTCCCTTCCACGTCAAAACCCACCTTCAAGAAAACACCTTTTTCGACACCACGTCTGACAACCTCGCATCTTCCCGTGCGGCACTCCGAATCCGGTTCTATGACTCGGATTCCAAATGCGTGCTTTCGCTGAAAGCCCGTGCTAAGCTACAGGACGGCGTTAGCCGCGTGGAAGAGGAAGAGGAGGAGATCAGCCCGTTGATTGGGCGTGAAATTGTAAGTAATCCTTCCAGGATTTTAGATTTGTTGCCCGAATCTAAGATCATGAGGAGGGTTGAAAGCGAGATTGGGATTGATGGAGAATTTGTCTGTTTGGGTGGGTTTAGGAATGTGAGGGCTGTATATGAGTGGGTGGAGGGTTTAGTGTTGGAGTTGGATGAGACGAAGTATGATTTTGGGACAAGTTATGAGATTGAGTGCGAGACTATGGAGCCGGAGAGGTTTAAAGGGTTGAATGAAGGGGTCTTGAAGGAG



gi|34459864|gb|CF437174.1|CF437174 EST673519 normalized cDNA library of onion Allium cepa cDNA clone ACADX54, mRNA sequence

CCTCTTCCTCTTCCACTTCGA
||||||||||||| ||||.
GGAGAAGGAGAAGTAGAAGTA

EST sequence (targeted fragment marked with yellow):
CCCAATTATATGCCGTCATGTTGTTGGAGATGCTAATGAACAATTGTGGAGATCATATTCATAAACAAGTGATCGATAACGGTCTTCTTCCTATACTAGTGAAGATAGTGAAGAAAAAAACAGATTTGCCGGTTAGGGAGAGGATATTTCTTTTATTGGATGCTACTCAGACCTCTGTTGGTGGTGCCACAGGAAAATACCCTCAGTATTACGCTGCATATTATGAGCTGGTGGCAGCAAGAGTTCAATTTCCAGATCGTCCTAAGGTTCCACCACCTGAACCATCTCCTCCTAGGTTGCAAGTAAAAAATATTCCTGCTCAAGAACCCATTAAACAAAATGGAGCCATTGAAAAGCCACCTTCTCAGATTGTAACTGATGCAAGTGTGACCGAGAAGGCTGCCAGTGTCTTAGAAATATTGAATGAAGTTCTCAATGCCATGGATCCCAAAAACCCTGAGGGAGCATCTGATGAATTTGTCTTGGACCTTGTGGAACAATGTTCGTTTCAAAAGCAGCGAATCATGCATCTTGTAATGACCTCTCGGGATGAAAAGATGGTCAATCAAGCAATTGAACTTAATGAACAATTACACAAGGTATTAGTACAACATGATGCTCTCCCTTTCAGTGGTGTGCTGGTTCAAAAACACATTTTCATGTTAATGGTAAAGATGAAGATGAAGAGGAAGAGGATGAAGAGCGTCTTTACTTGAGGTTACGGAAGGGAAAAGCTTGTGCTGAAGATATCCAAATGGCACTGCAAAACATTTTAAGGTCATTTCGGATGACAAATACAAAGACGATCATTCGACATTGTGCATACAGATCCTGACTCTAAGCACT