| mature miRNA: TGATTGAGCCGCGCCAATATC species: Allium cepa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|34462270|gb|CF439580.1|CF439580 EST675925 normalized cDNA library of onion Allium cepa cDNA clone ACAAR67, mRNA sequence TGATTGAGCCGCGCCAATATC EST sequence (targeted fragment marked with yellow): CAACCCTTTCACTGCGCGTGAGATATTGGCGCGGCTCAATCAGCAGTTACCTCCTTCTTCCCTTGGGTTGAAACCCATCCTAAGATCCGCTTTCATCTTCAAAGACGTCCTCACCTCCATTGCCACCGGTTCACGTCTGAACCCGAATCCGTTATCAAACCCATGGGACGTCGTCTTCAAGCTCAGCTCATACAAGGCCTTCTCAGAGGTGTCACCATTGATCCATTTTACCGATTTCACGTGCACCCAGACTTTGCTAGAAGAAATAGGGTCCGATGACAGCATCCACATCGTGGATTTCGACATCAAAATCGGAGGTCAGTGGTCTTCCTTCATGCAAGAGTTAGCCCATCGGAGATCCAACAACGGCACAATTCCATTCCTTAAACTCACAGCAGTCGTCTCGGTTCCGGGTTTCCACCCATTAGAGCTCCAGCTAACCCGAGAAAACCTTTCTCAATTCGCTCAAGAACTCAGCATCCCTTTCGAATTCAACTTCATAACCATCGAATCGTTCGACCCGAACGAGTTCCTAGCCGCCAACGAATCCATAGCGGTTAATTTACCTATTGGGTCTCACTATGTTCATACTCTAGCCACGATCATCCGATTGGTCAAACAGATGAACCCGAAAATAGTTTTGTCAGTTGACCAAGGGTGCGATAGAAGCGACCTGCCATTTTCACACTACTTCCTACACACGTTTCAGTCATGCATGGGTTCTCTAGACTCCATAGATGCAGCAGGGACAAATGCCGACGTGGCAGCAAGATAGAGAAGTCTTGGTTCATCCGAAGGTT | |||||||||
gi|34463015|gb|CF440325.1|CF440325 EST676670 normalized cDNA library of onion Allium cepa cDNA clone ACAFI17, mRNA sequence TGATTGAGCCGCGCCAATATC EST sequence (targeted fragment marked with yellow): GGTTCAAAACCCATTACTGTACAACCCGACCCGACAACCCGATACCCACTACCTCGTTCCTCCGAACCCGAAACGCCTCCACTCAGCCGCATTTCCACAGAGCAACATCGTGCAGCAGCAGCGTCCTCCTCCAAAGCCGAAAGAAGAAACCGTAACAACAATAGGGCAGCAGCAGCAGGTCATCGTTGACCAGCTATTCAAGGCTGCGGAGCTTCTAGAAGCTGGCAACCCTTTCACTGCGCGTGAGATATTGGCGCGGCTCAATCAGCAGTTACCTCCTTCTTCCCTTGGGTTGAAACCCATCCTAAGATCCGCTTTCATCTTCAAAGACGTCCTCACCTCCATTGCCACCGGTTCACGTCTGAACCCGAATCCGTTATCAAACCCATGGGACGTCGTCTTCAAGCTCAGCTCATACAAGGCCTTCTCAGAGGTGTCACCATTGATCCATTTTACCGATTTCACGTGCACCCAGACTTTGCTAGAAGAAATAGGGTCCGATGACAGCATCCACATCGTGGATTTCGACATCAAAATCGGAGGTCAGTGGTCTTCCTTCATGCAAGAGTTAGCCCATCGGAGATCCAACAACGGCACAATTCCATTCCTTAAACTCACAGCAGTCGTCTCGGGTTCCGGGTTTCCACCCATTAGAGCTCCAGCTAACCCGAGAAAACCTTTCTCAATTCGCTCAAGAACTCAGCATCCCTTTCGAATTCACTTCATAACCATCGAATCGTT | |||||||||
gi|34461520|gb|CF438830.1|CF438830 EST675175 normalized cDNA library of onion Allium cepa cDNA clone ACAAN05, mRNA sequence TGATTGAGCCGCGCCAATATC EST sequence (targeted fragment marked with yellow): AAACAACATCCCGTTTTAAACTGGAATAATGTTGTTTTGAACCAAAATCGGTTTGAGTTTTCCAATCAAAATCCATCCTTTTTTCTTCCATTGTCTCAATTCGATGCTCCTTCAGAAACCCATAATGCGCAATTTGTTGATTCTAGTATGGCTGCTAGCAACAATAGCAATTACAGTGATACCAATGGTAGTCTTTTTCTTAAAAGAAACCAACTTCAAAATGGTTATGCTAAGAATAAAGATGAATTAGCAAATCAGCAGCAAATTCTAGTGAATCAGTTGTTTAAAGCAGCGGAATTCATTGAAGCTAGTAATAACATATGCGCAAATGAGATATTGGCGCGGCTCAATCAAATTTTCCCTTCATTACCTATGGTAGGGAAACCAATATTTAGAACTGCTTTCTATTTTAAGGAAGCTCTTCTACAACTTATTAATAATATTCCACTTTTCACTACTGCATTATCAACACCAATGGATGTTATTCTTAAGCTTAATGCATATAAAACCTTTTCGGATATTTCTCCTATAGTCCAATTCACAAACTTCACTTCTATTCAAGCAATACTCGAAGAGGTCAATGGTTACAATAGCATTCATATTATTGATTTTGACATAGGGGTTGGTGCTAAATGGTCTTCATTCATGCAAGAATTTTATCAGTAGAGAAGTGAATGTGATATCTA | |||||||||
gi|34465691|gb|CF442989.1|CF442989 EST679334 normalized cDNA library of onion Allium cepa cDNA clone ACAHI95, mRNA sequence TGATTGAGCCGCGCCAATATC EST sequence (targeted fragment marked with yellow): CTGATTCAAGTGGGCATGACCAGAGTTTTCTACACTGGATTAGTGGTGGTGTTGGTACTGGTACCAATGTACAAGATCATGATGGAGATGGATCGACTTTTGGGTTAATGGATAATCCATATAGCACCGAACCAATTGGAGCTCCGTTACATCTACCAAACCCTTTGTTCTCACAAGAAGCCATGGAAGAGAAATCACTTGATTTCAATCAAAATATAATGTTCCCAAATCAAAATCCTTCCTTTTTGCTTCCAGTGCCTCAGTTTACCAATCAACTCCAAACCCATTTCGTAGATTCTGCTAATTATGCTCCTACTGCTAACACTAGTAGCTTGTTTCTTCGAAGAAATCAGCTTCAAAATGCAAGCTTTATGAACCATAATGCGGTTTCTTTGAATACAAGCGATGATTTAGCTGGTCAGTTGTTCAAGGCTGCTGAATTCATCGAATCTAGAAATATTATAGGCGCCCGTGAGATATTGGCGCGGCTCAATCAATGCTTCCCTTCTCAACCTATCATAGGGAAGCCTCTATTTCGCTCCTCCTTTTATTTCATGGAGGCTCTTCGTCTTATCATCAACAACTCTCTTCCTAATATGACCTTATCTACCCCATTTGATGTTCTTCTAAAGCTTGGAACTTACAAATCCTTTACCGACATCTCCCCTATTGTACAATTCACAAGCTTTACATCAATTCAAGCAATACTTGAAGAAACAATGGCCATAGCACATTCATATTATTGATTTTGATGGTGGGGTTTGGGTGGACATTGGTCTTCTTTTATGCAGAACTAGCTCATAGTCGA | |||||||||
gi|34470658|gb|CF447956.1|CF447956 EST684301 normalized cDNA library of onion Allium cepa cDNA clone ACABG67, mRNA sequence TGATTGAGCCGCGCCAATATC EST sequence (targeted fragment marked with yellow): GCTTCCAGTGCCTCAGTTTACCAATCAACTCCAAACCCATTTCGTAGATTCTGCTAATTATGCTCCTACTGCTAACACTAGTAGCTTGTTTCTTCGAAGAAATCAGCTTCAAAATCCAAGCTTTATGAACCATAATGCGGTTTCTTTGAATACAAGCGATGATTTAGCTGGTCAGTTGTTCAAGGCTGCTGAATTCATCGAATCTAGAAATATTATAGGCGCCCGTGAGATATTGGCGCGGCTCAATCAATGCTTCCCTTCTCAACCTATCATAGGAAAGCCTCTATTTCGCTCCTCCTTTTATTTCATGGAGGCTCTTCGTCTTATCATCAACAACTCTCTTCCTAATATGACCTTATCTACCCCATTTGATGTTCTTCTAAAGCTTGGAACTTACAAATCCTTTACCGACATCTCCCCTATTGTACAATTCACAAGCTTTACATCAATTCAAGCGATACTTGAAGAAACAAATGGCCATAGCAACATTCATATTATTGATTTTGATGTTGGGTTTGGTGGACATTGGTCTTCTTTTATGCAAGAACTAGCTCATAGTCGAGGAGGAGGTAATTGTTCTCTCAAAATTACGGTTTTTGCCTCCAATTCATCACATCATCCTCTCGAGCTTCATCTCACCAAAGAAAACCTCTCTCATTTTGCGGCTGAGCTCAACATCTCATTCGAATTCAACGTGCTAGGTCTTGATTCCTTTGATGCATCTACACTGCTTTTCTTGACATCACCAACTGAAGCTATTGCAGTTAATTTGCC | |||||||||