| mature miRNA: ATACTCCCTCTGTCCCAAATT species: Aquilegia formosa x Aquilegia pubescens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|71696117|gb|DR926754.1|DR926754 EST1118293 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1NG19, ATACTCCCTCTGTCCCAAATT EST sequence (targeted fragment marked with yellow): AGATTAAACAATATGTCAACCAAAAAAAGAAAAAGAGGGATCATTTTCCACATGTTGAAACCCTTTTTATAGAACAACTCACAGAACTTGGATGTAAAATTGTTTTTATTTTTTGGTAAGAGATGTAAAATTGTTGAGTTGAATCATATACTTTGATCCAAATAAATTCGTTTTGATCTATTTGCCCATAAAAAAAAACGGTTTGATCTGAGTTGTGTGAACATTTTCCCTTTCTTGACATTCCTTTTCAACCCTAACTCATTAGCCAACACTTTTTCATTGAAAACAAGGCAAAGGGGGATAAGCAGCCATGCTAATTGCTTTTCTACACCATACTTTGAATCCATTCCAGTGATGATTTTCATGCAATCTCATTTGGTTTTAGTTTTTATTAAAAAAAAAATACTATAAAAAAAATGGGGATAGAGGGAGTATGTATTTTATGAGCCCCGCCCTACATTGTAAATTCCAAGGCATGTCCCTAAATAATTTAGCTGTGCAACACATAAAATAACCAGCCAAATATCTCTTTGTTGGATTTGTTTGTAAATCCCTAAGAAGGTTTGCCTAGGAATTATCCCTTTGTATTCTTCTATGCTTTGGTCTTTCCTGACATGCTTAATATTCTCTCTTGGGATTCCTTTGTTTTACATACAGTACATTGTATACTTAATTAATACTACCTTATAATAAAATAAATACCACATGAGTGGCTGTTTAAGATAATGTATGAAATTATGAACATCATATTAGCTCCAAGAGGTAGGTTTTCTTTATAATGATTATCATTCTAGCTAGGGTTTTGAGGAAAAAGCCTAATTTTGCTTTTGTGGGGGTGAGCACCAGAATTTGATTTGTGTTGAAAAGAAGACCTATCATCAGTAAACAAGAG | |||||||||
gi|71690810|gb|DR921447.1|DR921447 EST1112986 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1MK18, ATACTCCCTCTGTCCCAAATT EST sequence (targeted fragment marked with yellow): TTTATTCGTTTGTCTACTAACTCTATTTTCTAATTTACCCCTATTTAATACTAAATACAATGTCTAACTTTTCATTAGAATAATTACTCTAATCCCAAAGCAAGGGTAGTATGGACAAATGAACCATTTAACTTAATTAATATGTGTTGAAAAGTCAAAAAGGTCATATAATTTGGGACAGAGGGAGTATTATTAGCATGTGTTTGGATAGGATATAATTTTCTTGGATATATTTTCTCTCTCTTGAGAATGAACATCGTATTCTTCCATGGTTTGCACCTTCCATGGTATGTGCAAACGGAACATTAAATTGCAGTGCACATTCTTATTGTGTAATGGTTAATGAATCACGACATAGCTACATGTAGTCCATACTTTATTCTTTGCAAATGATTTGTGTGACCTAGACCAGGAGTAGATGTTTTGTATTGAATATGTTTCCCGTAAGTGTACTGGGTTTTATTTTCTAAGAAAAACAATACAGGGACCTAGAAGTCTTGATTTTGTAATGAATCACGACATAGCTACACATAGTCCGTTTATTCTTCACAGATTGTGGTTGTGTGGCCTAGACCAGGTTTAGATGTGTTGTATTGAATATGTTTCCTTAAATTTACGGGGTTTTATTTTGGGTTTTTCATCATTAGTGGGGATCTATTATTAATTCATAATATGCCTCTGCATGCAGGGTCATATAGTTACGGATCAATATAATGCTACATATTGTTCTTACAGTTCAGACGTTGCAACTGGTTATGGTGTTGGCTCTTTCTTATTTCTTTTGTCAAGTGAATCGTTGCTCATGGGTGTCACCAGATGCATGTGTTTCGGAAGTCCTTTAGCTCCT | |||||||||
gi|74546395|gb|DT750134.1|DT750134 EST1183983 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1WO73, ATACTCCCTCTGTCCCAAATT EST sequence (targeted fragment marked with yellow): ATGGGTTGAAAGTCAAAAGCGACATATATTTTGGGACAATCTAAAATGGAATAAGGTACTTATAATTTGGGACAGAGGGAGTATTATGTTTCCTTTATGATTTATCTAGAATAAAAAATACACGCATACAACATTACAAACTAAAAAAATGAATAAAAACTAAAGCTGCTGCAGCCATCCAACAATGACTACACTAGCAACCCAACAAGCTCCTTTTGATACAGCCTGAGATAAGATGTTGCCTTTCATTAAAATCATTATATGCAGTTCAGGGTAATAACCATCATGGGTCTTTATTTTATTGATTCCTGAAGTTGTTCCAATGCAGTTACTACCACATCCATATTTGGCCTCAACTTTGCTTTGTTTGCTAGACATTGGACCGCGAGGTGAACTACCTTTTGAGCCTTTTCCAGTGAATATTGACCGTCAAGACGGCTGTCTACAAGACAGAAAATCCTTTGATTGTCGCTTAGGTAAAGCATGACCCAATCCACCAGGTTCTGTTGATTTGATGGCCACAGCATGTCCTTCGCTCTTCGACCAGATAGAATTTCTAGGAGAACTACTCCAAAACTGTAAACATCACTCTCGGCAGTCAAACGACCTGTAGCTATATACTCAGGGCAAGCATAGCCATAAGTCCCCATTACACTTGTATAGACATGGCTATTATCACCAGTAGGGCCATCCCTAGCTAACCCAAAGTCAGAAAGCTTTGCGTTGTAGTTCCAATCAAGAAGGATATTAGAATTTTGACAACCCCGATGTATAACATTGACTTCAGCACTGTGAAGAAAGGCAAGCGCCTTTGCAGCCCCTAGTGCAATCTTCATACGAATGCTCCAGGAAAGTTGGCAGTAAGAATTGCTC | |||||||||
gi|71695587|gb|DR926224.1|DR926224 EST1117763 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1ND02, ATACTCCCTCTGTCCCAAATT EST sequence (targeted fragment marked with yellow): AAAATTCTGTTTTGATTTCAGAAGTCGAACCAATATCAACTTACACAGATTTTGGAGAGAGGGAGTTTCTTGTGGCGGATAAGAGAGGATATGAATTCTTGCTCTATAAAATGGCCCAAACGTTCCTCCGTTTTGCACCTGAAGATAAAATCATTGACAGTCGTCTTCAGCTGAATAAGGTTGTCAAGGAAATAAAGTACTCAGGAAATGACGTTACTGTGAGAACGGAAGATGGATGCAAATATGTGGCCGATCATATGATTTTGTCAGCTAGTATTGGAGTCCTCAAAAGCGACCTCATTACATTTCAACCTCCTTTACCTAAATGGAAAACCGAGGCCATAATGAAATGTGATGTGATCGTGTACACAAAAATTTTCCTTAAGTTTCCATACAAGTTTTGGCCCTGTGGTCCTGGTACGGAGTTTTTCATATATGCACATGAGAGACGTGGTTATTACACATTTTGGCAGCACATGGAGAATGCATATCCAGGCTCCAACATTTTAGTAGTTACATTGACCAATGAGGAGTCCAAACGCGTGGAGGCGCAAGCAGATGATAAAACATTGGAGGAGGCAATTGGAGCACTTAGGGACATGTTTGGACCAAATGTACCTGTGGCCGAACAAATTCTTGTTCCTCGTTGGTGGGAGAACCGATTCCAGCGTGGTAGCTATAGCAACTACCCTGTTTTGTCTACTCGGAAGGACTTTGTGGACATCAAGGTCTGGTATCTACAGAGGCACCAGTTGGACCAATCTTTTTCAGTGGGGAGCACACAAACGAGAGATTTAATGGTTATGTCCATGGCGCCTACCTT | |||||||||
gi|74516272|gb|DT731979.1|DT731979 EST1165829 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1TA91, ATACTCCCTCTGTCCCAAATT EST sequence (targeted fragment marked with yellow): TTGGGACAGAGGGAGTATTATGTTTCCTTTATGATTTATCTAGAATAAAAAATACACGCATACAACATTACAAACTAAAAAAATGAATAAAAACTAAAGCTGCTGCAGCCATCCAACAATGACTACACTAGCAACCCAACAAGCTCCTTTTGATACAGCCTGAGATAAGATGTTGCCTTTCATTAAAATCATTATATGCAGTTCAGGGTAATAACCATCATGGGTCTTTATTTTATTGATTCCTGAAGTTGTTCCAATGCAGTTACTACCACATCCATATTTGGCCTCAACTTTGCTTTGTTTGCTAGACATTGGACCGCGAGGTGAACTACCTTTTGAGCCTTTTCCAGTGAATATTGACCGTCAAGACGGCTGTCTACAAGACAGAAAATCCTTTGATTGTCGCTTAGGTAAAGCATGACCCAATCCACCAGGTTCTGTTGATTTGATGGCCACAGCATGTCCTTCGCTCTTCGACCAGATAGAATTTCTAGGAGAACTACTCCAAAACTGTAAACATCACTCTCGGCAGTCAAACGACCTGTAGCTATATACTCAGGGCAAGCATAGCCATAAGTCCCCATTACACTTGTATAGACATGGCTATTATCACCAGTAGGGCCATCCCTAGCTAACCCAAAGTCAGAAAGCTTTGCGTTGTAGTTCCAATCAAGAAGGATATTAGAATTTTGACAACCCCGATGTATAACATTGACTTCAGCACTGTGAAGAAAGGCAAGCGCCTTTGCAGCCCCTAGTGCAATCTTCATACGAATGCTCCAGGAAAGTTGGCAGTAAGAATTGCTCCAAAAGAGATGATTGTCCAAGCTCC | |||||||||