| mature miRNA: ATTTGGGACGGAGGGAGTAAT species: Aquilegia formosa x Aquilegia pubescens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|71716743|gb|DR947380.1|DR947380 EST1138919 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1R492, ATTTGGGACGGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): GTTGAAATACGCAGAAGAGAGAGTGAGAGACAGAGAGAGGGAGAGAGAACGCTGAACCAACGCTCGCTTTGTGGATGTGAAAGCGGGATTTATTCGTATTTCATAAAACCCTAGTTACAAACTTACAACTGTTTGTTTGGAAACTCTTTCTATCAATCTTCCCTCCTTCCCAAATCCCAATACTCTCTCTCTCTCTTTCTCTCTCTTCATCTCCACCGACAAACCACCACGCTCGCCGACGGAAGTGCAGCGGTGCTACCGTTCGGAGCAAAATCCCGCCAAACTTGAGATAATAATCAACCGCGCTCTTTTTACTCTCTCTTCGATAATCAGGTATTTAAATAATTGTATTGAATGTGATACTGATCTACTGGATCTGGAGCAACCATGTCTCAAAATGTAGAAGCATCGGTGGGAGAAGAACCTGATTTTACATGGGGAATAAAGAGAGGAATGGGTGGCAAGAAGAAAGAGGTCCAGTTTTACGAGTCTTTTACATATGACGGCATAGAATACTTTTTATATGACAATGTGTATCTTTACAACGAGGGCGAGCCAGAGCCATATATTGGCAAACTTGTGAAAATATGGGAGCAACCACAACAAAAAAGGAAAGTTAAGGTTCTTTGGTTCTTTCGCCCGGCTGAACTTCTTAATTGGCTTGGAGATGTTTCAACTCTTGAAAATGAACTATTTTTGGCTACCGGTGATGGTCGCGGTCTTGCAAATATCAATCCACTGGAATCGGTTGCTGGTAAATGTCATGTTGCATGCACATCAAAAGATAGCCGG | |||||||||
gi|74544282|gb|DT748715.1|DT748715 EST1182564 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1WG21, ATTTGGGACGGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): AAAATATTGTCAGTACAATCTTACATCTCGTTTCTATTGTACAAGGCCGGGCAAGAACTGCTACAGCCATTTTATTCCTCAGCTCTGAACATTCAAACCCCAACAGAATATTGGTGGGGGTGAAAGGCATGCAAAACAGCCATACAACAATTTGAGAACAAACAGCTATATATCCTTTCTGGTAGAGAAATGCTGTGATCAAACTCCTAGAGCTCAAAGGACAAACTCAATCACCATCAAAATTTTGACCAAACAATAAACAATCATCACTAACACTGCAATCTCCATCCGCGCTCAGCAATAGCTTCCCGTACCCGGCCAGCTGCTTCTGCAGTGTCATTAAGAGGTGGGTAGCTCCAGCTTTCAGCCATATCCTCTTTACCAGTGAATGGCCTAGCCAGACCTCGTTCCTGCAGGGACTTGTGAAAATCTAGAAACTTCCACTTACACCGGTCAGCTCCAGTAACATAGACAGGCTTCCCAGTGCCACAAGCCTCACTAAGCATACTAATTGAATCAGCCGTAATAATAAAAGCATCGGCCCAAGCAAGATGCCCCATGTGTGGATTTGGTTCTGCGAGTAACATAAGCAGAAAAGATGTCACACAATTGTCATAACCCTGAACAATGTGCTTTGTAATGTAACAATTTTGAAACTCAAATTACCTTCACCGTCCCAAATATAAACCTTTGAATGATGGCCTAATTCTTTTAATATTATGTCGTATACCTTATGAGGAGTCCTCCTGGAGAAAGAGATTCTCAAGCTTCCACAGGTTGCAAGCACATTCTGTAGGGAGACAGTCAACTGCTTCGCAAGGTCAGCTCCATAGCGACAGTGTCTTGTAGGCCCCCCTATGTTGACCACAACCAAGGGCTTGGGCAGAGGTGCCAACTCATCATGCCAAGCTGTAGCAGCATTCCGAAGTGCAGCAGCATCAGCCTGATGTAGAG | |||||||||
gi|74545150|gb|DT749233.1|DT749233 EST1183082 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1WJ32, ATTTGGGACGGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): ATCAATCTTCCCTCCTTCCCAAATCCCAATACTCTCTCTCTCTCTCTCTCTTCATCTCCACCGACAAACCACCACGCTCGCCGACGGAAGTGCAGCGGTGCTACTGTTCGGAGCAAAATCCCGCCAAACTTGAGATAATAATCAACCGCGCTCTTTTTACTCGAAGACTCTCTTCGATAATCAGGTATTTAAATAATTGTATTGAATGTGATACTGATCTACTGGATCTGGAGCAACCATGTCTCAAAATGTAGAAGCATCGGTGGGAGAAGAACCTGATTTTACATGGGGAATAAAGAGAGGAATGGGTGGCAAGAAGAAAGAGGTCCAGTTTTACGAGTCTTTTACATATGACGGCATAGAATACTTTTTATATGACAATGTGTATCTTTACAACGAGGGCGAGCCAGAGCCATATATTGGCAAACTTGTGAAAATATGGGAGCAACCACAACAAAAAAGGAAAGTTAAGGTTCTTTGGTTCTTTCGCCCGGCTGAACTTCTTAATTGGCTTGGAGATGTTTCAACTCTTGAAAATGAACTATTTTTGGCTACCGGTGATGGTCGCGGTCTTGCAAATATCAATCCACTGGAATCGGTTGCTGGTAAATGTCATGTTGCATGCACATCAAAAGATAGCCGGAATCCTCAACTTTCTCCGAAAGAAGTGGAAGTGGCTGACTACATATTCTATCGTACATTTAATGTAGAAAACTTTACCATATCAGACAAGATAGCTGACAAAATAGCTGGGGTTGAAGT | |||||||||
gi|74545823|gb|DT749722.1|DT749722 EST1183571 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1WM23, ATTTGGGACGGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): TCACCATTTCCCGATGTGACATAGACATTCTTTCTCTTTCTTTTATCTCCAGTCTTCTTCTTGACTCACTCCTTTCAATTATTATTATTGTTAAGTTTCTCTCCCGTCTCTCTCTCCCAAACCTTATTCATCTCTCCGTCCAAAATAATAATTTCTTTCTTCTTCTTCATGTTACCTGTTTCCAACATGAGAAGAATGGTGTCTTATTTCTTGTTCCACTGGACAAGTTAAAAAAAAGAGATGAAGTAGTTATCTAGTAGTATAATTATTAAAAAAAAAAAAAAGTGATGGAAGATCTATATAACAGGTTTATTGATGTTACTCCTACTTCAGAAAATAGTAGTAGTTCTGGATTTCTACTTCATCAATTTCAAACAAATAATGAAAGTGGATCTGAGATGATGAGCGATCTGATTAAAGCTCAAATTGCTAGTCATCCTCAATATCCAACTTTGGTTTCTGCTTACATAGATTGTCAAAAGGTTACTTCATTCTCTCTTTCTTAACACATAAAACTCTACTTTTGTTTATCTATTTTCTAACTAGTTTTAATCTATGTACAGATCGGTGCGCCACCAGAAGTTGCATCACTTTTTGAAGAAATTAGCCGAGAAAGTAGGCCAAGTAGCAATAGTTTTAATAGTGAGATTGGAGATGATCCCGAGCTTGATGAGTTCATGGAATCTTATTGTAAGATATTGGTTGGTTATAAAGAAGAGTTAACAAAGTCATTTGACGAAGCAGCAACATTCTTGAGCAAGATTGAAACACAACTTAATCATATTTGTAAAGGAATGTCTACTACTACCATATCTGGAAACTATGATCAATCTGATGAAACGGTTGGGTCTT | |||||||||