mature miRNA: CCATCATCATCATCATCATCA species: Aquilegia formosa x Aquilegia pubescens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|74533285|gb|DT741734.1|DT741734 EST1175583 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1V165, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GTTGTACCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTTTCTCTGTGTGAAATTGTGAATTACAATTGCAATTGGTGGTTTGATTTGATTAATTTAGGATGATGGGTAGTGTTAGTAATACCGGTGGCGATGTTGAAGCAGGGTTTGCAAAGCTACAAGGGGAAGATTTCGAATACTACATGCAAACCTATTCGATAGTCCTCGGCCGCAACAGTAAGAAATCCAATGTCGATGTCGATCTCTCTAGCCTCGGTGGAGGTATGAATATTTCACGCCACCACGCTCGAATTTTTTATGACTTTCGTATGCGCCGATTTGCTCTTGAAGTTTTAGGAAAAAATGGTTGTATGGTCGAAGGTGTTCTTCATCTACCTGGTAATCCTTTAGTCAAACTTGATTCTCAAGATCTTCTTCAGATTGGGGACAAGAAATTTTATTTTCTTCTTCCTGTTCGTAGCATTCTTGGTGGTAGTAGTGGTGTTGTATCCACCGCTACCAATTCTTCTACTCTCCCTCGGACCCACCACCATATTTCTCACCCTTCTTCTGCTCGAATTACTCCTCCTCCGCCTCCCTTTGGTGCTGCTGCTGCTGCTGCTGCTGGTTCTTCTAGAAAAAGACAAGCTAAGGCACCAGCTAATGAGTACCTTGAAGAAGAGGAAGAAGAGGATAATGATGATGATGATGATGATGGGGAAGAAAATGATGCCATGGATGATGATGATGATGATGACAATGAAGACGACAATGATGAGGATGATGATGAGGATGGTGTTGGAGGGATGCAAAACAGACAAGAGCTCAACTATGGGTTCTGG | |||||||||
gi|71690618|gb|DR921255.1|DR921255 EST1112794 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1MI94, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CAGATAATATTACAAAATGAATTTGCATAAAACATAACATACACAGAATTTTACAACATTTGCCCTAAATCTACCAAAAAAAGTTTGCGAAAATGAGTCTTGGTGGTTTTCATTCTCCCCACTGCAAATCCCATTCCCACCCAAATCAGTCTCTCCCTTTAATCATCTTGAGTGTCTTCTTAGCACTGTTTGAGTCAAGTGGTAGCCTCCTCAGCTTTGGGCAACTTCTCACATCTATAGTTTCCAAGGATGGGAAAGACAATGCACTGGTATGGCTACATATGGACTGGAGATTGCGCAAACCCCATAATTCCAACCTTTTGAGATTTGAAAAAATAGTATTTTCATCACACGGATATCCTCCTCCTCCTGATTCCTCAGAAGAAGATATTATGTCTTGAAGACTACTACATCTCCATATTTGTAGTGTTTGTAGATTTGGAATGAGAAGAAGCCATGTAAGATTCACCATTGCGTTACACCCTTCAAGATGTAAGTAATGAAGTTTTCTGAAATGTGTACAATGGAGATTCCTTGCATCCCATGAGATAATTAATTTGGGGAGATTTCGGAGGAACATTGTCTCCAAGCTTTCAAATAACCCAATCTCTGGCTCATCATCATTTGTGATGCAATCAAATATCCACTCTTTGATCTCTGAACACTTAAAAATGTGAAGAAATTGCAGTTTTTGAAGACGTCCAAGAGATAAATGCGATGATGATGAAGAAGATGATGCTGAAAGTGTGGGT | |||||||||
gi|74542755|gb|DT747771.1|DT747771 EST1181620 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1WA41, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CAATCCAATATATCTCTTTATCCATCCATGGCTACTACTATTACTACTGAGGCACAACTATTAGGTCCACCAGAACTATATACACAACAAACAGATCTTACAACAACAACAACAGATCTCTCTGCAAAAGTTGCAGATCCCCTTGTTGTTGATGATGATGATGATGATGACGACAAAAGTTCTACTGATGATATCGATGATGAAGATGGTACTTCACCTGTGATGGGGTTTACAGAAAACTGTTCTGCGACTTTTCTCAAAACTGGTAACCCATGTCTTGATTTTTTCTTTCATATTCTTCCTGATACACCAAAGGAAAGTTTGATAGAAAAATTAGAATTAGCTTGGAAACATAATCCTATAATGACTTTGAAACTTATTTGTCATTTAAGAGGAGTTAGAGGTACTGGGAAATCTGATAAACAAGGGTTTTATGTTTCTGCATTATGGTTACATCAACATCACCCTAATACATTAGCTTTAAATATTAAGTGGTTTGCTGAGTTTGGTTATCTTAAAGATTTGCTTGAAATTTTATATCGATTACTTGGAGGTTTAGAGGTTAGAAAGGTAGAAAAAAAGAATAGAGAAACTAGTCTTTTGTCTTGGACAAGAGGCAAAAGAAAGGAGAAAACAGTGAAGGAAGTTGTTTATCGTAAAGGTAAAAGAGAGTTGGTTAATAAGAGTGCTTTTAAAGCTAGGAGAAATTCTAATCCTAGGGAGAAGAAGAGAATTAAGAAAGATGCAGAGGACCC | |||||||||
gi|75454395|gb|DT764700.1|DT764700 EST1198549 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1Z413, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): CTCTTACTTGTGTGTGATTTCTTTATTTCTTTGGAAAAAAAAAAAAAAAAGGCAAAAGCTTTAATTATTAGTAGTGGTAGATGTAATGGCGAATAGAGATAGAGATCGTGAACTTCTTGTACCAGTTGCTGATTCAGTTAGTGATGATGATGATGGTTCTTCTTCTAAACCATCTTCTTCTATGTCTGCTCAACTTGCCAGTAAAGAGGCTTTCGGAAAAGTTGTTCAGAGCTGGGCTTCCAAAAAGTTTATGACTGGATGTGTCATCCTATTTCCCATAGCTATCACTTTCTATATTACGTGGTGGTTTATATGTTTCGTGGATGGGTTCTTCTCTCCAATATATGCTCACCTTGGGATCAACATCTTCGGTCTTGGGTTTGTCACGTCTATATCATTCATCTTTATGGCTGGGGTGTTCATGTCTTCTTGGGTTGGTGCATCGCTTCTGGGAATTGGGGAGTGGTTTATCAAGCGAATGCCCTTTGTTCGGCATATTTACAATGCATCCAAGCAAATTAGTTCTGCCATATCACCTGATCAGAACGCCCAAGCTTTCAAGGAAGTGGCCATTATAAGGCATCCTCGTATTGGGGAATATGCGTTAGGTTTTATAACTTCATCTGTTGTTCTTCAGAGCTATTCCGGAGATGAGGAGCTCTGCTGTGTCTATGTTCCCACCAATCATATGTACATTGGAGACATATTCTTGATAAATTCCAAAGACATCATTAGACCGAATTTATCAGTTCGTGAAGGAATTGAGATTATTATCTCAGTGGGCATGTCAATGCCTCAGATCCTTTCAGCAATGAGCAGCCAGACAATCCAAATGGATAGGAGTGTTAGAATCGGCTGAAACTGGTGCCAAAGGTTTTGATAAAGTGTAGCTGCAGCTATCGGAACAGACACTGTCTATGGGTCTATGAC | |||||||||
gi|74541052|gb|DT746709.1|DT746709 EST1180558 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1W385, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): AAAAATATTACAGACCACCACACACAAAACAAACTCAATCATGACTGTAGGAGTCTGGAAACAAGATAATGTTCTGTCTTCATGTTCTATAATATCCTATCCTAAATCCTACTAATAAACAAAAGATAAGCCACGTCATCTTCCCCAAAATATCTTCTTCACCACTTGATCATGAATGCCTGGCTCTTTCATCAACGTCATTCAACACAAAGCGTTGACCTCAGCTTGATGAGTTGTTAATGATGATGATGATGATGATGATGATCCTTCCCATATCTCTTCACCACTTGAACTTAATCTACCATTTTGCAAACCTGCTCTTATAGCCATTTGATCATTATCAACTCCATTTTCTTCGTCGTCGTCGTCATCGTTATCGCCATCATCAAGATCATGGTTATCATCAGATGATAAAGGAACTAACAAACAACTGCCATGTAAATGTCCATTTACACAAACGAAGTACTCTAGTTTATCATGGTGGGACCCAAGTCTCGTAGCGGCACTTTTAGGCACAAGTTTAGCTGTTGTCATACTCCAAACACGTTGTCCACAATATGGACATCGAATTTGCTGTTCAAGCTCTATTTGCCGTTTGATTAAACAAGCTCTTGTTTTTGATTTCATAAAACCTCTAATTACTCCTCTAAAAATACCCAAATCATCAATATTACCTCGCATTGTATGTTCACATGGATCACTGATGTATAACAAATCACTTTGACATCTCTTCATCAAGAAACTCTGACCAGATGTTTTCGAAAACCGCGACAATTTCACAAAATGACCAGGTAAAGTTTGATCAATTCGAAAATGTCGACTTGGCACACATCCACAACAATAGAACAGAAGCTTTGCAAGTGCGTGCCATCCATCTCCGACTCGTAAATTT | |||||||||
gi|74535272|gb|DT742979.1|DT742979 EST1176828 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1VH46, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): TTCTTAACTAAACAAGAAGAAACTGTACAAAAAAAAAAAAAACTATGCAAGCAAGAAATTTGCAAACAAAAAAATGAATCTTGATGTATTAGAAAACTTCCAAACCATACAACACGCCAGCATACTTCTCAGGTCCATCATTTCCAAAGAAAGTATCTCTAATCTTCTGAAACGCATGCCATGTCAGCAAACTATCTGAACCAGCCTGGTGACATTTCCCAACTGCTCGATCCACATCAAGTGTTCTTGCAACTCTGTCTAACCCACCATACAAACTATTGCAATACCTCATCAAATGCTTCACATCATAAACTTTTCCAAAAAACACCCTCATCAGACTCAGAAATTCACCAATTTCCTCTGGCAAGTTCTTACGAGTTAAGATCTTGACTAAGTAACCAAAATCATAAGCACTGTGAAAAGTAACCCAACTCACTGAATCATTACAAACGAGTCCACTCGACATCATTAACTCAGCAAATCGGTATGAATCAATTCCAATTTCACGATTTTTATCAAAATCAATTCCTTGTCGTTTCAACAACTCAATTGAATCAGTAGCATGAACATCTTTAGTAACATCGAAATCTCGAAAGTTAAATTCCCAAATATATTGAAAAGCAGTTCCGAGATCTGGAAGATTTCCATTAGCATCAGTAAGAGTTAATCCAACTTGAATCAAATTCAAAGCATCAACATTTGTTTTCAAAAGCAAATAATGATCTGATGGTTGCAATCGATGAAAATACGTTTGTTGATGTTGTTGTTGTTGTTTGTTGATCGTAGTTATTGATGATAATGATGATGATAAAGAGTTCTCGAGATCTGAAGGACGATAAATGATACCAGGAAACTCAGTATCCATTGAAATGATAGGAAATTGATCTATTACATCTCGAATTAAATCAAATTCTTTTGAAAGATTTTCAGCATA | |||||||||
gi|74521306|gb|DT734781.1|DT734781 EST1168631 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1TT78, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): TCTCTCTCTCTTTCTTGTTCTTTCTCTCCAAAACCCTAAATCCGAATACATATAGAGAGAGAAAGAGAGATGTTGGAAGCAGAAGAAATCGAAGCAGTTTTAGAGAAGATTTGGGATATTCATGATAAACTAAGTGATGCAATTCATTCAATTTCAAGATCGCATTTTCTTAATACAATCAAAACCCTAAAGAATTCTTCTGAAGAGATTTATTTCTCTACAGATAAGAAGAAGATTAATAATAATAATAATAATAATAATAATAATAAAGGTAGTAATGGTGGTGATGATGATGATGATGGAAGTGGATTTGTGTTTACGAAAGATGTAAGAATCGATGATGAAGAAGTTATTGCTGAAGCCAAGAGTTTAAATGCTATTCGAACTGCTCTTGAGAACCTTGAAGATCAGCTTGAGTTTTTTCATACTGTACAATTGCAACAGCGGGCTGAAAGAGATGCTGCCATTGCACGATTAGAGCAGAGCCGCATTGTTCTTGCAATGAGATTAGCAGATCACCATGGTAGGAAGTATAAAGTCATTGAAGAAGCTTTGGCCTTTGTTGGTGATGTACACAATTCCAGTCGCTTTATTTCACCAGAACATTTATTCGAATCTAGAAGCCAATCTGGTGAAAGCTCGAAGGGTCATGAGGAGAAGTGGTCTAGCAATCTGATGCAAGTTCTGGTATCTAGTTATGCCTTTGCTAAGAGATGGCTTAAGCTGGAGCAAATGGGAGGGCTTTTAGGCCAGACTGCACTGGTTGCAGTGAGCATGGGCGCATTGTTGCATCTGCATCAAGTTTCTTCTAAAACAAATTTTGTTTTGGAGGTTCCACAGATTAAAGAGGATTTGTATTACAG | |||||||||
gi|71723312|gb|DR953949.1|DR953949 EST1145488 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1SA56, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): TTGAGATCTTGACCATAGCGATAAATCGGCATAATGATTCGATCTTCATAACTAAACCCATCTTTTTCTTAATCTTTCAATAAAAACCCACTTCTTCAATTCTTTAATTTCGCATTAATTTGTCTTAATTCATCACTATGTCAATTGCTTTTGACACTAGTAATAATAGAATTGAAAGTTCAGGATTCATTCGTGGTTTATCTTGTATGATCTTTGAATCACCGGAAAAAACTAGACCTATGGCTGTCGTCGGTAGTGATGGTGGTGGTGGTGATCAGAGATTTCCGGGGGCTAAAGTTGTTGTTCATCATGATGATGATGATGATTGTTGTAGTTCTTCTTCGATTGGAAGAAATAGTGATTCTGATGGTGATGATGATGATGATGATGATGATGGGGAAGTTCAGAGTTCTTTTAAAAGTCCATTGGATACACTTGATGCTTTGCAAGAAGTTTTACCTATTAAGAGAGGAATCTCAAAGTTTTATAGTGGTAAATCGAAATCCTTTACCAGTCTTGCTGATGCATCCTCTGCCTCCATCAAAGAAATTGCCAAGCCAGACAATGCATATACAAGGAAACGGAAGAACCTTCTTGCTACCAGTATTTTATTGGACAAGAACCATAATAATCCTTTGAGACAGAGTGTTGGAGGGATTTCAAAACGACGCACCTTCAATCTTTCTGGTACCCCTTCAAGCAGCTCGGAAAGCATTACAAGTGAGAACTCAAATACATCATCTTCATCACCACCTCCACCTCGGCTTCCTCCTCTCCACCCTCAAACAAAACCATCTTCTGACAA | |||||||||
gi|71704032|gb|DR934669.1|DR934669 EST1126208 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1OY61, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): TAATTTCTTGACAGAAAAGGCGACGAAAAGAAATAAGACTACCAAAGGCCTAGAAGCAAAAGATGTTGATGATGATGATGATGATGAAACAAAGAAGAATTCAAAGACTAGTGGAAAAGACAGCAAACATCCAACATACAGAGGAGTACGAATGCGTAGCTGGGGTAAATGGGTGTCAGAAATTCGCGAACCAAGAAAGAAATCAAGAATATGGCTTGGAACATTTTCCTACACCAGAAATGGCTGCTCGTGCTCATGATGTTGCAGCACTCACAATAAAAGGTCATTTCTGCTCATCTAAATTTTTCCTGACTTGGCACCATTGTTACCACGCCCGGTTAGTGCTTCACCTAAAGATATACAAGCTGCTGCTGCCAAGGCTGCCACATTTGGTGAACCTAAGTCTATTGAACCAGTCGAAAGCTCGGTGTCCCAATCATCATCAAGTCCTAGTCCTACTACTACTACAACATCCAGTGATACACAAGAATCAACAAATTTCTGAGTCTAATAATGACTGCGATGAAGCGTTTTTTGATTTGCCTGATCT | |||||||||
gi|74518199|gb|DT733057.1|DT733057 EST1166907 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1TH46, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): TCTTAATACCAAATCTTGGGCTGATGTTGATGATGATGACGATTATTTCGCTAGCACTGCACCACCTCCAATCTGGGGCGGTTCTAATGATCCACCTAAACATAAGGAGACCACTACTCCTCTCGAGGAAAGTGAGAGTGAAGAAGATGGTATAGATGAAGGTGATGATGATGTTGAGGAGGACCATGAGCATGAACCTGAAACTGAGGCCCCTGTCCAAACAGAACCAGCTGTGAAGAAACTTCCACAAGCTCCCGTGGCCAATAAAGAAACGGAAAGGCAGCTTTCAAAGAAGGAATTGAAAAAAAAGGAGCTTGCTGAGCTTGAGGCTGTCTTGGCTGAGCTAGGAATTCGAGACAAATGAGCAAGATGGAACACAAGAAACTGCAGA | |||||||||
gi|74526134|gb|DT737415.1|DT737415 EST1171264 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1U938, CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): AGGTTACATTCCTGATCAGCCTACAATGTAGCGTCAGGTAAAGATACAAGATCAGTGTGAATAAGAGTTTCACACAGTACATTGACACACAATGGACATACAATACAGGCCAGAGCCTTTGCTAAAACTTGTCTCCACCTTCATTTCAGATCACTCATCCTTGTTTCGCCTCCATAGAGCGTAAGTTCACATGAAGGCATCAATCTAAAGAGTCACCAACGAACTCCAGTCCGTAATCAGACTCACAAAATGGCATCCCTTGTTTCTTGCTTCACCACCTAACCAAAACCATAGAGTACCTTTGATTCTATTGCATACCCTGCCCATGTCGAAATATTTGTTCTCAAAAACTATCTATTTCCGGGTTTTGTAGTCTTCTTTGGAGTACGATCCATACAAAGAATTTAATTTTGGGTGGAAGCTTAATGGGCCAGGCAAGCTTATGGGGGAAATCATGAAGAATAGTACCATGTACCAGTCTATTTTCTTTCTAAATGAACTCTGCAAAGCTGGAAACTGATAAAATACATTTCTCCTCCAACTTCCACCACCACTGGTCGTCTCTATCTCCTATTTATGCTACTGCAGTAGCTGTGTAAGTTGCTGAATTTGCTACACCTCCCAATCTCTGGGTTCTCTCCTGAGATTCAAGTTCCAGTTCACAGTTCTGTCAGCCACATTGAAGTGATCAACAACTGAGCCATTCCTCCTTGATGCAAACCTTGAAACCCTAATTTCGCCCAAATTCAGTGGCGATGACGATGATGATGATGATGATGATGTTGTGCAAATTGAAAACCCCAATTTCGCCCAAATTCAGTGGCGATGATGATGATGTTGTTGTTGTAAAGATTGAAAACTCCAATTTGATTTCTTCTGAATTTGATAAAAAACCTAACTTGAACTTGACGATGAAGAGAGAAACCCCAACAACCCCATT | |||||||||
gi|71718407|gb|DR949044.1|DR949044 EST1140583 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1RE79, CCATCATCATCATCATCATCA |