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mature miRNA: TGCCTGGCTCCCTGTATGCCA
species: Aquilegia formosa x Aquilegia pubescens
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|71715431|gb|DR946068.1|DR946068 EST1137607 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1QW76,

TGCCTGGCTCCCTGTATGCCA
||| ||||||| .|.|.||||
ACGTACCGAGGAGCGTGCGGT

EST sequence (targeted fragment marked with yellow):
CATGAAATTAGCTGAGTTTTATAGCTAAGTCAAGAGAAAGAGCTTCCCCCCCCACCAAAAGTAGAAAATTAGAAATGTTGTGAAGAGTTGATGAAGGTGCCAAAGCAAAAGGTAGTTTTGTTTGTGAAAGCAGAAGCTTGTGGGGCATACCAATTCATTTCATATGCACTTTAGACTCTTTGAGAGAGTTGATTTGATTTTCAATTAAAGCTTCTTTCTCCCTTTCTTGAATAGATATATACTTGATTCAAGTCCTCTCCAGCTTCTTCACTCTCCACACATTACTATATTACTTCTTCTTATAAGTTTGGTGGTCCTTAGCTTCTCTTCAGCAAGCTAAGGTAACTAGCTATAATGGAGTTGTGGATTTTCTTCCTTCTTGCTACTTTCTTGATGATGGTGAAGTAAGTTATAAAGAGAGATGTTGGTGTTTGATTAATTACACACACATATATATGTAGCTAGCTAGCGCTACATGCATAAGTGCTCTATCATGTATGCCTGGCTCCCTGTATGCCATTTGCTTAGTCCATTTAGTATTAGATGGCCTTTGTGGATGGCGTGCGAGGAGCCATGCATATTGTTGTGCATGTTGTATACTATATGTTGTTGTGATTATATCACCAACCCTCTTTCAGCTCCCTCTCTCTCTCATTTTATTATTTCAGAGTATAATTTGATGCTTTAGTTAATTGTGTTTTAGATGTGAAGAATTTTGTATATGACAAGCTAGAATAATGAAGAATTTCCTATGACTTGACAGTTTGTTTGACTTATTGATTCATT