miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CTATCCTCATCATCATCTTCT
species: Arachis duranensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|296577702|gb|GW959938.1|GW959938 Dur25.seed.ADAA-aad95f05.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
|.||||.|||| .|||||||
GGTAGGGGTAGGGGTAGAAGC

EST sequence (targeted fragment marked with yellow):
AATAAACTTCCAACGCAAAGTGGAACATCACAGGAGTTAATAGGCATACTCGGTCGGTAATCATAATCATAATTGAAGAAAAATGGCATCCATCTTTGCTAGCACCACAACTCCATCGATCACCCGCGTAGGTCTCTTGCCCAAGCGGGCTCTCGGGGTTTCATCCTCAACCGTTCTTGGGTTGCCAGCAATGGGGAAGGTGGGAAGAGTGAGGTGCTCCATGGAGGAGGGAAAGGCTTGTTCACATGAAAGCAAGTCGAAGATGGGGATGGGGATGGGGGCATCCTTGATGGCAGCTGCTATGGCTGCAAGCATGTCGAGCCCAGCCATGGCTCTTGTGGATGAGAGGCTGAGCACCGAAGGAACAGGGCTTCCATTTGGTCTGAGCAACAACCTCCTTGGTTGGATCCTGTTTGGTGTGTTCGGTCTCATATGGGCTCTCTACTTTGTCTACACCTCTGATCTTGAAGAGGACGAAGAGTCCGGATTGTCTCTCTAAAATAAAATGTTTAAATTCATTATATGCTGCTATTGTTGTGTATTGCTAAACAACCACTTCTGTATCGCTTCCAACTTCTAAATAATCTTCATTTTACTCTTCCTCTC


gi|296560337|gb|GW939858.1|GW939858 Dur25.seed.ADAA-aaa08a02.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 |||| ||||||||| |.|||
AATAGTAGTAGTAGTCGGAGA

EST sequence (targeted fragment marked with yellow):
ATTTACCCGAATCTGAAGTAAAGTCATTGCCTCTCAATCAGGAAAGAGAGGCTGATGATGATGATAATGACGAAGATGACTCTGATAATGAAATTCCTTCTTTTTCTGATATTGAGGCAATGATTCTTGAAATGGATTTATGTCCGACTGATCAAGATACAAGTGCAAGCAGAGAAGTGTTGAGATATCAACATGCTGAGACCAAGAGGACCATCATGAGATTGGAGCAATGTGCACAGTCCTTTATGCAAAGAGCCATTGCATCTCGGGGGGCATTTGCTGTATTGTATGGGCGTAATCTGAAGCAATATATTAACAAGAGCGAGGTCATACTTGGAAGAGGAACTGATGACCTACATGTTGATATTGACTTGAGAAGAGAAGGGCGTGCTAACAAAATATCTAGACGACAAGCTTTAATAAGGATGGAAGCAAATGGCTCTTTCATTATTAAAAATCTTGGCAAGAATTCTATCTTCTTGAATGGCAAAGAGGTTGCTCCAGGACAGCTGCGGGGTCTTAGTGCTAGTTGTTTGATCGAGATTAGAGG


gi|296566330|gb|GW951441.1|GW951441 Dur25.seed.ADAA-aab47e08.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
|||||||| ||||||| |||
GATAGGAGAAGTAGTATAAGT

EST sequence (targeted fragment marked with yellow):
ACAGCCCGCAAACTCAGCCTAGGCAAGAAGACCGTGAATTTAGCCCTCGAGGACAGCACAGCCGCAGAGAACGAGCAGGACAAGAAGAAGAAAACGAAGGTGGAAACATCTTCAGCGGCTTCACGCCGGAGTTCCTGGAACAAGCCTTCCAGGTTGACGACAGACAGATAGTGCAAAACCTAAGAGGCGAGAACGAGAGTGAAGAAGAGGGAGCCATTGTGACAGTGAGGGGAGGCCTCAGAATCTTGAGCCCAGATAGAAAGAGAGGTGCCGACGAAGAAGAGGAATACGATGAAGATGAATATGAATATGATGAAGAGGATAGAAGGCGTGGCAGGGGAAGCAGAGGCAGGGGGAATGGTATTGAAGAGACGATCTGCACCGCAAGTGTTAAAAAGAACATTGGTAGAAACAGATCCCCAGACATCTACAACCCTCAAGCTGGTTCACTCAAAACTGCCAACGATCTCAACCTTCTAATCCTTAGGTGGCTTGGACTTAGTGCTGAATATGGAAATCTCTACAGGAATGCATTGTTTGTCCCTCACTACAACACCAACGCACACAGCATCATATATGCATTGAGGGGACGGGCTCACGTGCAAGTCGTGGACAGCAACGGCAACAGAGTGTACGACGAGGAGCTTCAAGAGGGTCACGTGCTTG


gi|296561218|gb|GW940739.1|GW940739 Dur25.seed.ADAA-aaa20a03.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||||||||| ||
AGTAGGAGTAGTAGTAGTAGC

EST sequence (targeted fragment marked with yellow):
TGTGGCTTTCGTGTTGTGTTGGATCTAATCACATAAACCCACTCAATTCATTTCATTTGATTTGACACAGCCATGACTGCTCAGACCCAAGAAGAGCTTCTTGCCGAGCATCTCGAACAGCAGAAGCTCCATCATGATGAGCCTGTAGTTGAGGATGAGGATGATGATGAAGAGGATGACGATGATGATGATGAGGATGATGACAAAGATGACGACGGTGAACGACATGAGGGTGAGGCTGGTAGGTCCCAGCAGACGAGGAGT


gi|296551123|gb|GW934035.1|GW934035 Dur25.root.ADAA-aaf40h03.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||||||||||||
AGTAGGAGTAGTAGTAGAAGT

EST sequence (targeted fragment marked with yellow):
CCCGAGGGTGGAGCTGGTGGCGGGGCGGCAGAAGAGAATGGAGAAGAGGAGGAAGATGAAGACGGTGAAGGTGACGGTGATGACCAAGATGAAGATGATGATGAGGATGACGATGATGACGACGAAGAAGATGAAGGTGGCGAAGAAGAGGAAGAGGAGGGTGTTGAAGAAGAAGAGAATGAAGATGAAGAAGATGAGGAAGATGAGGAAGCCCTGCAGCCCCCAAAGAAAAGGAAGAAGTAAATTTAGTCTTAGTTAAGCCTCCTATCTGTATTATTGTGTACCAATTTGGATTCTAACTTCCATGCTTTTTTCTTCCTTTTTTTTTTGGTACTAAACTTCCACGTTTCAATTTTTAGTTTAAAAGGAGGCTTTTTGTAGATGTTTTAAACTCTTAATTGATATCTGTGTTTCCCATTGCAG


gi|296544044|gb|GW927352.1|GW927352 Dur25.root.ADAA-aae28d02.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||||||||||  |
AGTAGGAGTAGTAGTAGACAA

EST sequence (targeted fragment marked with yellow):
GGTTTACTGTAACCAGATTCGGACCGAAACCCATTGACTCTCTGCTTTCTACCTTCAGCTTCACACACTTTTTGCCAATGGAGGTTCTTCAGCTTCAGATTCCTTCTCTTCTGGCCCACACTGTCCTCGCTTCTGCCCAATCTCTCGCTCTCATTGGATATCTGCTGGGTCGTGTCGGTGATTCGGCATCTTCAAATTTGACTGATGCAAGGTTTCCTTTAGAAGACCTTCGTGAGAGGAAACATGCTTTCCTAGAAAACAAGAATAGTGAAACAGATGATGATGAGGATGATGACGACGACGACGATGAGGATGCACATGATGAGGATGATGATGGAGAAGAGGAATATTCAGGTGATGAAGGTGACGAGGAAGGGGGTGATCCTGAAGATGATCCTGACGCTAATGGTGCTGGAGGCAGTGATGATGGGGAGGATGATGATGACGATGATGGGGATGAGGAAGATGATGATGATGAGGGGGAAGAATGAAGAAAAAGAGGA


gi|296549344|gb|GW932968.1|GW932968 Dur25.root.ADAA-aaf24b06.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 | ||||||||||||||||||
AAAAGGAGTAGTAGTAGAAGA

EST sequence (targeted fragment marked with yellow):
AGAGAGAGAGAGAAAGAGAGAGAAGGTGCTCTGGTTTGAATTGAAGAAGATGATGATGAGGAAAAGCATAAGGTGCTGCATATCTTGCATTCTACCATGCGTGAGCCTTGGACGTAATAAGAATATTTCACTCCAATGGCAGGGTGGAGGAGATCAGCGGAGCAACCATCAGAGCCAGCGAAATCATGAAGGCACACCCTAAGCACGTGCTCAAGAAGCCATCTTCACCTTCCTCCGCCGCACCTCTTCCATACATCGTCGTCGTCCCTCCCGACGCCCTCCTCCATCGTGGTAAGATTTACTTCCTCATGCCACTCCCCTCCCCTCCTCCCGCCAAGAAAAACCATAACCGCCGCCGCACCTCCTCCACCA


gi|296574182|gb|GW948257.1|GW948257 Dur25.seed.ADAA-aab09e07.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||||||||||  |
AGTAGGAGTAGTAGTAGACAA

EST sequence (targeted fragment marked with yellow):
TAACCAGATTCGGACCGAAACCCATTGACTCTCTGCTTTCTACCTTCAGCTTCACACACTTTTTGCCAATGGAGGTTCTTCAGCTTCAGATTCCTTCTCTTCTGGCCCACACTGTCCTCGCTTCTGCCCAATCTCTCGCTCTCATTGGATATCTGCTGAGTCGTGTCAGTGATTCGGCATCTTCAAATTTGACTGATGCAAGGTTTCCTTTAGAAGACCTTCGTGAGAGGAAACATGCTTTCCTAGAAAGCAAGAATAGTGAAACAGATGATGATGAGGATGATGACGACGACGACGATGGGGATGCACATGATGAGGATGATGATGGAGAAGAGGAATATTCAGGTGATGAAGGTGACGAGGAAGGGGGTGATCCTGAAGATGATCCTGAGGCTAATGGTGCTGGAGGCAGTGATGATGGGGAGGATGATGATGACGATGATGGGGATGA


gi|296563799|gb|GW944655.1|GW944655 Dur25.seed.ADAA-aaa67b07.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||||||||| ||
AGTAGGAGTAGTAGTAGTAGC

EST sequence (targeted fragment marked with yellow):
TGTGGCTTTCGTGTTGTGTTGGATCTAATCACATAAACCCACTCAATTCATTTCATTTGATTTGACATAGCCATGACTGCTCAGACCCAAGAAGAGCTTCTTGCCGAGCATCTCGAACAGCAGAAGCTCCATCATGATGAGCCTGTAGTTGAGGATGAGGATGATGATGAAGAGGATGACGATGATGATGATGAGGATGATGACAAAGAGGACGACGGTGAAGGACATGAAGGTGAGGCTGGTAGGTCCAAGCAGACGAGGAGTGAG


gi|296577770|gb|GW960006.1|GW960006 Dur25.seed.ADAA-aad96f05.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||||||||| ||
AGTAGGAGTAGTAGTAGTAGC

EST sequence (targeted fragment marked with yellow):
TGGCTTTCGTGTTGTGTTGGATCTACTCACATAAACCCACTCAATTCATTTCATTTGATTTGACATAGCCATGACTGCTCAGACCCAAGAAGAGCTTCTTGCCGAGCATCTCGAACAGCAGAAGCTCCATCATGATGAGCCTGTAGTTGAGGATGAGGATGATGATGAAGAGGATGACGATGATGATGATGAGGATGATGACAAAGATGACGACGGTGAAGGACATGAAGGTGAGGCTGGTAGGTCCAAGCAGACGAGGAGTGAGAAGAAGAGTCGCAAGGCAATGCTCAAACTTGGAATGAAACCTGTGTCAGGTGTCAGCCGCGTCACAGTAAAAAAGAGCAAAAATATCCTATTCGTTATCTCAAAACCAGATGTATTTAAAAGCCCAACATCCGACACATACTTCATTATTCGGGGAAGCTTAGATCGAAGACTTGAGTTCACAGCTACAAACTCAGGCAGCTGAACAGTTCAAGGCTCCCAATTTGGCTAATGCAGGACCGA


gi|296572259|gb|GW950967.1|GW950967 Dur25.seed.ADAA-aab41f01.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 ||||||||||||| || .||
TATAGGAGTAGTAGGAGTGGA

EST sequence (targeted fragment marked with yellow):
ATGGTAAAGTTTGTTCCTTTCTTTTTGTAATGTTTGTGGGTACCCCTTTGGATTTTAACCTTCATCCTTGATCGTCTGAATTTCGATGCCATTGTAGGCGACAATGAAAACCCTATGAATGTGGGAGAGTCCTCTGGTAGTGGTGACCTCTGCAAGAGTTCCACCTCAGGATCACTGAATTCAAACAATCCCAATGGTTCTGATGATATTTCAGGTGAGGATGATGAGGATATGATTGATGAAGGTGAAATGGATGAAGATCCTGATTATGGCTCTGAAGTTGATTACGATGAGGACTACTACGACGATGTTTATTCAAGTATGCAGGATCAATTTGACAATTTACCTACTGGGGTTGAAGCTTCACTGCCTTGGTTGAAGGATATTG


gi|296573181|gb|GW954020.1|GW954020 Dur25.seed.ADAA-aab78e01.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||| ||||||||.
AGTAGGAGTAGGAGTAGAAGG

EST sequence (targeted fragment marked with yellow):
AAAAAGCAATTGGGACTGAAATTCAATGGCACCCAGGGAAATGCTTGACGCAGAAGATTCTTAAGAAAAAGCCCAAGAAGGGTTCAAAGAACGCAAAACCTATTACAAAGACTGAAAACTGTGAAAGTTTCTTCAATTTCTTCAATCCACCACAAGTTCCTGAAGATGATGAAGATATTGATGAAGATATGGCCGAGGAACTTCAGAATCAGATGGAACAAGACTATGACATTGGGTCAACAATAAGGGATAAGATTATACCCCATGCCGTGTCATGGTTTACTGGTGAGGCCATTCAAGGCGAGGAGTTTGGAGACCTGGAAGATGATGATGAAGACGACATTGAGGAGGATGATGAAGAGGATGATGATGATGAGGAAGATGAGGATGAGGATGATGAGGATGAGGATGAAGAAACCAAGACCAAAAAGAAGCCATCACATAAGAAGGGTGGAAGAGCGCCGGCTGGTGAAGGTCAACAGGGTGAGCGACCTCCAGAGTGCAAGCAGCAGTAGAAGTTTATCTATTATGATTTATGCAGTAGCTGAAAGCTTTCTTGTTGGAGAATGTCTGTTGAAATAGTGGGGTTCATGCGGTTTTGTTTTATGATGCTTAATTCATTTTTCTCTTTTAAGGTCTTGGTAGTTTGAATT


gi|296563033|gb|GW947449.1|GW947449 Dur25.seed.ADAA-aaa99h11.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
|.||||||||| ||| ||||
GGTAGGAGTAGAAGTCGAAGT

EST sequence (targeted fragment marked with yellow):
GGACTCATCGCTGTACTTGTCGACGGCCGCCAGCATTACCATGTTGGTTGCATATTTTGCTTACCTTATCTTTCAGCTGTGGACACACAGGACATTGTTTGAAGCTGAAGATGAGGATGGAGATGGTGAGAATGGTTCAGATGATGAAGAAGCTGTTATTGGAGTGTGGAGTGGTGTTGCATGGCTGGCTGGGATGACTGTCTTCATTGCCTTGTTATCTGAATATGTGGTGGACACAATTGAGGAAGCATCAGAGTCATGGGGTCTCTCTGTAAGCTTTCTCAGCATAATTTTGCTACCAATTGTTGGCAATGCAGCTGAACATGTTTTTTTTATCATATTTGCTTTCAAGAACATGCTGGATATCACGTT


gi|296576723|gb|GW958959.1|GW958959 Dur25.seed.ADAA-aad83b08.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||.|||||||||||||.
AGTAGGGGTAGTAGTAGAAGG

EST sequence (targeted fragment marked with yellow):
ACACTGGTAGTAAATAGTGAGTGTTAGTTACTATTAAGCATTAACCCAGAAAAGAGAAAACTCACAGAATGTGATGATCAAGTTTCTGCTCTAGTTCTAGTGTTGTTCTTTCTCCTATCTCATATAAACAATAAAACCCTTCATCATCTTTGTATCGGTCTTCAATGGCTGCCTCAGCTTTGGCACTAGCATCATCTACCTCCCCATTATGTTTAAGAATGCCCTATCAAAGGATTTCACTTTACAATGCCCGTTCCTTCATCTTACATGGAAAACAATTCCTTCCTCACACTCGTACGAACCTTGAACCTTCTTTCCATGTTAGAACCCCTCTTGCGGCCGTTCCTTCTTCCTTGCTCCAAAGGGGTGGTTGTGCTTTTTCTTCGGAGGAAGATGATGATGGGGATGATACCAATGATAAAATTTGAAAGTTTCTGCATTTTGAGGATAAGCCAATGAAATTCGCTTTGCTGGTTCTGTTTTGGGCTTCTGCCTCCCTGGCTTGGTTTTCTTTT


gi|296545711|gb|GW925459.1|GW925459 Dur25.root.ADAA-aad59e06.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||| ||||||||.
AGTAGGAGTAGGAGTAGAAGG

EST sequence (targeted fragment marked with yellow):
CCCAAGAAGGGTTCAAAGAACGCAAAACCTATTACAAAGACTGAAAACTGTGAAAGTTTCTTCAATTTCTTCAATCCACCACAAGTTCCTGAAGATGATGAAGATATTGATGAAGATATGGCCGAGGAACTTCAGAATCAGATGAAACAAGACTATGACATTGGGTCAACAATAAGGGATAAGATTATACCTCATGCCGTGTCATGGTTTACTGGTGAGGCCATTCAATGCGAGGAGTTTGGAGACCTGGAAGATGATGATGAAGACGACATTTGAGAGGATGATGAACAGGATGATGATGATGAGGAAGATGAGGATGAGGATGATGA


gi|296553457|gb|GW932097.1|GW932097 Dur25.root.ADAA-aaf10c07.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
|||||| |||| |||| .|||
GATAGGTGTAGAAGTACGAGA

EST sequence (targeted fragment marked with yellow):
ATCAGAGAGAGAGAGAGTCCTGCAACTACACTGCTCTCTGCCATCTCCTGATTCCTTTCTCCTTGGTTGCCAAACCCGAACTCGCTTCCTTCCTCGCTCGCAGCTACAGGGAAGAGAAATCCTTCTAGAAACAAAACAATAGAAACGCTTCACCTTCTTGTATCGTGGACCAACGCCTCTACTCTTGTTTTCTGCATGTCCATCCATTGGCCACTCCAAGCAGCATCATAATAGTAGTAGAGTCTGAAGATGAAAATGGAGGGTGATCTGAAGCAGAAGCTGCTGCTGCCTTCTTCAGGAGGGGTAGAAGAGGAAGAGGGCTTGTCACTGGTTAGGAGGGTGTGGGAAGAGAGCATGAAGATGTGGATAGTGGCGGCGCCAGCCATATTCACAAGAGCTTCCACTGTTGGAATCCAAGTTA


gi|296574158|gb|GW948233.1|GW948233 Dur25.seed.ADAA-aab09c02.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||||||||| ||
AGTAGGAGTAGTAGTAGTAGC

EST sequence (targeted fragment marked with yellow):
TGGCTTTCGTGTTGTGTTGGATCTAATCACATAAATCCACTCAATTCATTTCATTTGATTTGACATAGCCATGACTGCTCAGACCCAAGAAGAGCTTCTTGCCGAGCATCTCGAACAGCAGAAGCTCCATCATGATGAGCCTGTAGTTGAGGATGAGGATGATGATGAAGAGGATGACGATGATGATGATGAGGATGATGACAAAGATGACGACGGTGAAGGGCATGAAGGTGAGGCTGGTAGGTCCAAGCAGACGAGGAGTGAGAAGAAGAGTCGCAAGGCAATGCTCAAACTTGGAATGAAACCTGTGTCAGGTGTCAGCCGCGTCACAGTAAAAAAGAGCAAAAATATCCTATTCGTTATCTCAAAACCAGATGTATTTAAAAGCCCAACATCCGACACATACATCATATTCGGGGAAGCTAAGATCGAAGACTTGAGTTCACAGCTACAAACTCAGGCAGCAGAACAGTTCAAGGCTCCCAATTTGGCTAATGCAGGACCGAAACCCGAATCTTCCAGCGTTGCCCAAGATGATGAGGATGTGGATGAGACTGGTGTAGATCCCAAGGACATAGAGTTAGTGATGACT


gi|296561726|gb|GW944006.1|GW944006 Dur25.seed.ADAA-aaa59e08.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence 

CTATCCTCATCATCATCTTCT
 .||||||||||||||| ||
AGTAGGAGTAGTAGTAGTAGT

EST sequence (targeted fragment marked with yellow):
GGGGTTGCTGTGTCAGCTTTCGTGCTTGTTGTGTTGGATCTACTGTCTCCGAAAGACGATTCATTTGATTTGATATAGCCAAGACTGCTCAGACCCAAGAAGAGCTTCTAGCTGAGCACCTCGAGCAGCAGAAGATGCATCATGATGAACCTGTAGCTGAAGATGATGATGATGATGAGGATGACGATGATGAAGATGACGAGGATGACGACATTGCTGAAAGACATGAAGGTGATGTTGGTAGGTCCAAGCAGGACACGGAGTGAAAAGAAGAGT