mature miRNA: TCTTCATCATCATCATCTTCA species: Arachis duranensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|296566818|gb|GW951929.1|GW951929 Dur25.seed.ADAA-aab53e02.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): ATGAATGAATACTCATCTATCTGATCCTACCCCACCCACGCATCACGCATGGATTCATGTCAACCCCAACTCCCACCGGGATTCAGGTTCCACCCAACCGACGAAGAACTCATCGTTCACTACCTCAAGAGAAAAGCTTCCTCTGCTCCTCTCCCCGTTGCCATCATCGCCGACGTTGATCTCTACAAGTTCGACCCATGGGAGCTTCCAAGTAAGGCCACGTTTGGGGAGCAAGAATGGTATTTCTTTAGTCCGAGGGATCGCAAGTATCCGAATGGGGCTCGCCCAAACAGAGCAGCTACGTCCGGATATTGGAAGGCCACCGGCACTGATAAGCCTATTATTGCGTCTGATGGCCAACACCGACTCGGCGTCAAGAAAGCTCTCGTTTTCTATGGCGGCAAGCCTCCTAAAGGGGTCAAAACCAATTGGATCATGCACGAATATAGACTCACTACTACTCATAACAATAATTCTATCTCATCAAAGTCTTTTCCTTCTCTTCCTTCTCATCTTCCTTCCTCCAATCAGAAGAATAATTCCTTGAGGCTTGATGATTGGGTGTTGTGCCGAATATATGAAAAAAGCAACCGTGGCAATTTTGCAAGAACAGCGTTGATGGAGCACCATGATCATGATGATGATGATGACAATA | |||||||||
gi|296561358|gb|GW943638.1|GW943638 Dur25.seed.ADAA-aaa55b02.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): GGTGTTCATTTTCATTTTTCATATTAAGAGTAGTGGTGGCTGTGGTTCTATAGGATCCTAGGAACATTGAAAGTTGTTCATATCATATCATTCATTCTCTTATTATGGATGTGAAGGGTAATAATGTCACTCCAGATTTTTCTTCTTACATTCTCTTTGAGGCCAGTGGGGATTCTGAAGAAGCTGATTTTGATCACAACAAAATGGTTTGTGAGATTTCAAGGGTAGGTAGTTATGTTCATCATGGTCATGAAGATTATGACGATGATGATGATGCTCTATCTTGCAGCTATGATAGATCTGATTATGATGATGATGCATGTAATGTTGCTGAGGTCAATTGGGATGATGATGATGATGATGATGATGATGGGGAGAAGAAAGATGTTGTTTTTGGAACAACATATTGTGATGAAAAAGATGATGTTTAGCTTGATGGTCACTCTAAGTTGTCATATGTGTCATT | |||||||||
gi|296547272|gb|GW932806.1|GW932806 Dur25.root.ADAA-aaf21d12.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): ATTCACAAAAAACATAAAGAAGAATATATAATTATATATATTCCGCTAACTTGTTAAAAATCTAAGATGGCCAAGTTATCTTTGGGAAACATTCTCGTATTTGTACTTCTAGTTTCAGTTGTGTGGATGAAAAGTACAGTGGCCGATGATGATGATGAAGAAGAAGTATTGAGCCTCTGTGTAATAGATTGGGATGACGAAGATTGCAACAAAGGCATGTTTGAAAATTGTCTCAAAGAATGCGCAGAGAAATATGGTTCTATGGCCTATGATGCACATTGTGAAGAAGGACGATCCCGTTGTGCATGCATGTTTGAGTGTCCTGATATATAACCTATTAACCTTTAATTTGTTTATCAAAAATGAAAAAAAAAATCCCTGGTGGTAATTAATAATATTGATCAGTAGAGAGTTTTCCTAAGACTAGTTATTATGAAGTGTAGGAGTATGTGATTATTTCCCAAAATCCATGCATAGACAAGTTTGGCATAATAATTTTCTTTTAAACC | |||||||||
gi|296574158|gb|GW948233.1|GW948233 Dur25.seed.ADAA-aab09c02.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): TGGCTTTCGTGTTGTGTTGGATCTAATCACATAAATCCACTCAATTCATTTCATTTGATTTGACATAGCCATGACTGCTCAGACCCAAGAAGAGCTTCTTGCCGAGCATCTCGAACAGCAGAAGCTCCATCATGATGAGCCTGTAGTTGAGGATGAGGATGATGATGAAGAGGATGACGATGATGATGATGAGGATGATGACAAAGATGACGACGGTGAAGGGCATGAAGGTGAGGCTGGTAGGTCCAAGCAGACGAGGAGTGAGAAGAAGAGTCGCAAGGCAATGCTCAAACTTGGAATGAAACCTGTGTCAGGTGTCAGCCGCGTCACAGTAAAAAAGAGCAAAAATATCCTATTCGTTATCTCAAAACCAGATGTATTTAAAAGCCCAACATCCGACACATACATCATATTCGGGGAAGCTAAGATCGAAGACTTGAGTTCACAGCTACAAACTCAGGCAGCAGAACAGTTCAAGGCTCCCAATTTGGCTAATGCAGGACCGAAACCCGAATCTTCCAGCGTTGCCCAAGATGATGAGGATGTGGATGAGACTGGTGTAGATCCCAAGGACATAGAGTTAGTGATGACT | |||||||||
gi|296560962|gb|GW940483.1|GW940483 Dur25.seed.ADAA-aaa16f10.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): AGGTTATAATAGGTTTCTATTTGGCCGGTAGTGATGATGATGATGATGATGATGATGGCGATGGCGACGGCGACGAAGCTATTATATAGATAGACAACTAGTAACAGTAGACACAACTTGTGTCCTGTCCATCTATGGACTAATTTGCAGTTGTAGTTACAGGTTTAGACCTAACATAACAATAAAGAATTACAAGATGTCCGTTGCAGAGCTGAAGGAGCGTCACTTGGCGGCTACACAGACCGTTAACAACCTCCGCGACCGATTAAAGCAGAAGCGCCTCTCTCTTCTCGACACTGACATTTCCGGCTACGCCAAATCACAGGGGAGAACTCCGGTGACCTTCGGACCCACCGATCTGGTTTGCTGCAGAACCCTCCAGGGTCACACCGGCAAGGTGTATTCATTGGATTGGACTTGGGAAAAGAATCGAATTGTTAGCGCCTCCCAAGACGGTAGGCTAATAGTCTGGAATGCGCTGACGAGCCAGAAGACTCATGCCATCAAGCTTCCTTGCGCATGGGTCATGACCTGTGCCTTCTCTCAAACCGGTCAATCCGTCGCGTGCGGCGGCCTCGACAGCGTCTGCT | |||||||||
gi|296555511|gb|GW937045.1|GW937045 Dur25.root.ADAA-aaf87h06.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): AATGGAGTTAATCACGAGACAAAAGGAAACAAGCGCACACTTACTGAGGAGAGCTTTTTCAGTTGGTTCGGCGAAACTGAGCAGAAGGACCTAGCCGAGTTTACCGATGAGGTTGCTGAAATAATTAAAGAAGACTTATGGCCTAACCCTCTAAAGTACTTCAATAATGATGCCGACGAAGAGGATTCAGATGGTGAAGAAGACGCTGATGAGGAAAACGGAGATGACGACGAAGGCGATGATGATGAAGATGATAACAAGGAAGATAGCTAAGCCTTTTCTCGGTCGGCAGAAAACAAAACGGTTCCGTGTTCTCCGGTTAGTATCGATGAGCCTGGTTGGTTGGGAAGAGTTATATTTGTAGAAGGGTAGCTACTTTGTAGCTTGACACTGATAGAGGTTTTAGTTTTAGGTTTTTTCCTTTGGGGTGTTGAATCCTTAGGTTTGTTACTTAGCTTTTTGGACATTTCCATGCTTATATTGTAGGTTCTCAATCTTATCCTTACCATATGATTATAACCTATGAAACTCTTATTAGATGACTTTGTTCTTTATAAAATGTGATTATACCCT | |||||||||
gi|296558164|gb|GW946066.1|GW946066 Dur25.seed.ADAA-aaa83g03.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): AAATCCGACGTATACAGCCTTGGAGTGATCATCTTGGAGCTCCTAACTGGGAAGCCACCTGGGGAACCAACCAATGGAATGGACTTGCCACAATGGGTGGCTTCCATAGTTAAAGAAGAGTGGACTAACGAAGTTTTTGACTTGGAGCTCATGACAGATACACCAGCCATAGGTGATGAGCTTCTCAACACATTGAAGCTTGCCCTTCATTGTGTTGATCCTTCACCAGCTGCTAGGCCTGAAGCTCCGCAAGTTCTTCAGCAATTGGAAGAAATCAAGCCAGATTTGGCTGCTGGTGATGATGATGATGATGGAACTCTCAAGACTGCTGAATAAATTAAAAGTTTTTTTTTTTAAAATTTAATTTTGAATTAGTAGAGAAAGGTTCTTTCAATATTTCATTCTTTATTTATTTTTTGATTATTTTGTTTTTGGTGAAATTTGTTGATTCTCAGTGTATGTACATAATCAAGTGAGGAAGTATGCTAAGCAGTCTTGTATTGAATGTTATAGTGGTGTGATGACAATATGATACAAGAAGCTATTGAATGTAATAGTTAATTTATGTTTTGGATATAAAGAAAGTTCTTTCTTATTTTGC | |||||||||
gi|296552039|gb|GW931391.1|GW931391 Dur25.root.ADAA-aaf00a09.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): ATAGTGCAAACTAACGAACACCCCTTATTTCTCTCTCTTCCTTTTCCTCTCTCTCGCTATCTCTCCCAAACCCTACCTTCTCAACCCCATTTTCCACCTTCTGCTCCCGTCATGAAAGGTGCAAAGTCCAAAGCCGAATCCAAGAGAGGCGATGCCAAGCTTGCCGTGAATAAGAAAGGAACTCCGGCCACGAAGGGCGGTAGGAAAACCGGCAAGGGAAAAGCCGCCAAAGACCCTAACAAGCCAAAGAGGCCACTGAGTGCTTTCTTCGTTTTCATGGAAGAATTTAGGAAACAGTTCAACAAGGATCATCCTGAAAACAAAGCAATATCTGCTGAGGGCAAGGCTGCTGGAGCTAAATGGAAACAAATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCAGAGAAACGAAAGCAGGACTATGAGAAGAACATGAGAGCCTACAACAAAAAACAGGCTGAAGGTCCTACTGGTGGAGATGAAGAGGAATCAGACAAATCAATATCCGAGGTCAATGATGAAGATGACGATGAGGAAGGAAGCGGCGAGGAAGACGATGACGAGTAGGAGCTGGACTGAGAGTAGTATCTATCCTAGGTTGTTTTGGTGATTCGATCGTCTTCTGTAGATGGGTCTCATCACTTGCTGATAAACATGTTTCGTTCTTCCAGAAAACGTATTCCTGCTCCCT | |||||||||
gi|296551403|gb|GW934315.1|GW934315 Dur25.root.ADAA-aaf45c09.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): GGGAATTCAATCCACACCCAAAATCTCTCTGCAAGCAATTCACACCCATCTTCTTTCATTTTCATCTTCTTCTTCATCATCATCATCTTCATCCTCTTCTAATTCTTCTTCTTCCATGGCTACTTGCGTAGATTCCTCAACCTCCTCCCCTTTTTCTCAGAAGCCAAAAGGGTCCCAAACTGATGATTGTTCATATAACTACATCAAATTCTGCCGACCCACTTTCTCCGATCGTGTTTCCATTCCCAAGAACAAACCCCTGCATACACACACGGTTATTGAAGAGTCTGAGGCTAATGATGATGTTGACGATCGTGTTCATGATGAAGATGATGATGATGATGATGATCTATGGCGGAAGATGAAGGAAGAAGCGAAATCCGATGTGGAACAAGAACCTATTTTATCCAACTACTATTTCAGATTCAATCTTGTGCCACAAGTCTTTAGAAAGCGCGTTATCCAATCATCTTTCCAACAAATTATCCAGCTTGAATCTCAACAGCACCACTCTCGTTGATCTCTTCATGGGGATCTTGGAATCCAACGAAAAAAATCATGGCTTCCATGAAGGAAAATCTAAGAGC | |||||||||
gi|296560007|gb|GW939528.1|GW939528 Dur25.seed.ADAA-aaa03b04.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence TCTTCATCATCATCATCTTCA |