miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATCTAACGACTCTCAGTTATC
species: Arachis ipaensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|296590257|gb|GW967291.1|GW967291 Ipa.ADAB-aac89d09.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence 

ATCTAACGACTCTCAGTTATC
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TAGATTACTGAGAGTCAATAG

EST sequence (targeted fragment marked with yellow):
CCAGCATATGCTAAGACAGCCCCCATGCTATAATTTGCGTAAAGAAAAGTTTTCTTTAAATTATTAGTAAAAATAGTAGAATACTATATTGTCAATAATAAAGTGAACGAGTTAATTAAATATCGATAGAAGAAAACTATAGAAATTGAGTAAAGCTAAATACTTATATAAAATTAGGTGGAAATTCAGGTCGACTTCACATTAAGTTGATAACTGAGAGTCATTAGATGATTTGATTGATTTGACTAAATTTTCATGTAACGGCTCTCAGCTATCAACTTCATATGAAGTTGAGTGTGCTTAAAATTTCACCATAAAATTATGTTAGGTAGACTCTTCTTAGTTTATATGTAAATAGAAAATAGTTTAAAGTACCTGGTGAGTAAATCTTTTTAGTTCTT