mature miRNA: CCATCATCATCATCATCATCA species: Arachis ipaensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|296578083|gb|GW960820.1|GW960820 Ipa.ADAB-aab83g12.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): TGGTGGTGGCAGGTGGAAATCAATGTCTGATGCTGATAAAGCTCCCTACCAGGCTAAGGCAGAGAAAAAGAAAGAGGAGTATGAAAGGACTATGCAAGCCTACAACAAAAAACAGGAGAGTAAGGGTGCTTCTGAGGAAGATGAATCTGACAAGCCAAAGTCTGAAGTAAATGATGATGATGATGATGAGGATGATGATGATGATGAGTGAATTTGCTTGGTAACACGGGAAGCTTAACATGGAAATGGGAGAAGCATTTTCGGATAATTAGGGTTCTATTTAGTATTCGATAGGATTCTTACCCAATTCCAATATCTTGCTTATTATTAGCTTTTTAATTCTTGTTATGTTCCCTCTTTAGGTTTAGATTAGTGAATGATGTTAATTAGGGTTAATAGTATCATGATTATGTACTTATAGTTAACCTCTCTAGTATCTTCAATCACATACTTGGTTTCTTTT | |||||||||
gi|296588043|gb|GW966549.1|GW966549 Ipa.ADAB-aac77h09.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): AACGCAACACAACACTACGCACTCTCTCACGAAATCACTAGTGACTCGGAAACCCTTGCGGCTCTGACTCGGACTGAGTCTGCGATTTCGCAACTCGTTCTTCATTCGATTTCGAGTCTTCACGATTCGCTATGCCGAAGGTTAAAGCCGACGCGAAAGCTGCTGATAGCCGGTTGAAGCGCAAGGGCGCTGGAACGGGAAGGAAGCAGGCTAAGAAAGCTAAGGATCCTAACAAGCCTAAGAGGCCTCCCAGCGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAGTACAAGAAGGAGCACCCAAACAACAAATCCGTTGCAGTTGTTGGCAAGGCTGGTGGTGACAGGTGGAAATCAATGTCTGATGCTGATAAAGCTCCCTACCAGGCTAAGGCAGAGAAAAAGAAAGAGGAGTATGAAAGGACTATGCAAGCCTACAACAAAAAACAGGAGAGTAAGGGTGCTTCTGAGGAAAATGAATCTGACAAGTCAAAGTCTGAAGTAAATGATGATGATGATGATGAGGATGATGATGATGATGAGTGAATTTTGCTTGGTAACACGGGAAGCTTAACATGGAAA | |||||||||
gi|296594008|gb|GW975387.1|GW975387 Ipa.ADAB-aae19g07.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): ACTCTTATCCTCAACCCAAACATGGCGACATTCTTTCACCTCTCCAAGTCACTCTCTTCCCCGCTTCCTTTCTTCCGCATTCCTCCGCCGCTTCGCTGGAAACATAGGCCTTCCACGGTGGCCCCCGCTCGTGCGGGCCCCAGCTCAAGTAGCATCGCCTTTGCCATCGGCCTCCCTCTCTCTCTCCTCGCTGTCACCGTCCTCACCTCCCTTCGAATTGCCAATAAACTCGACCAACAATTTTTTGAGGAGATGGCAATGAATGAAGCTATCATGCAAGCTGATGAAGATGACGATGATGATTACGAAGATGAAGATTATTATGATGATGCTGATGATGCTGATGATGATGATGATGATGAAGATGCAGAAACTCCTGTACAACAAGAACCTGCCCTTCCGCGTTCTCGCAACAGGCCTATAAGGGAAGCTTAACTTTCACCCTTTTGGACTTTGAATTACAATTTAATTCAGTGTTGATCTTGTT | |||||||||
gi|296605431|gb|GW989148.1|GW989148 Ipa.ADAB-aae72b10.b1 IPA1-seed Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): GCCGGGGACATGGTGGTGGTGATGATGATCAAGAACAAGAAGAACGCACCATAAGAGAAATTCATGCCTTAACACCGCCTAGACCCCCAACAACAACTAACCATGGGAATAGGAGAAGACAAGCTTGGGAAACTCATCACAGCCTCCGTTCATCTTCTTTGTCCATGGCAAGCACAGATGGAGGTTCATGTGAGAACTTCTCAAGCATGAGTATGGAGTTCAGTGCTCTTGTTCTTG | |||||||||
gi|296579017|gb|GW964698.1|GW964698 Ipa.ADAB-aac46a11.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): ACGATCAAGATCCAACGGTCCACAATGTACGGGGCTTCTTCTCCTTCTTCTCCGAGGTTTTAGAGCTCTAACGCCTCAGATCCACGTTTTTGGTCTCTAGATCTTCCTTCCTGGATAACGTTTTCTGGCTCGAGAAGGTATTAGTTGGTCTGTTGTACGGATATGGAAGCTAAGAACAGCTCAGTGACGGTTACGCTCAATTATGGCGCGTTGACGTGCGCCGCGGAAGCGCTCGCAACTACGCTAGCTTCTGCTCTCGTCAAAGCCACGCTTTTGTCTCCGGATCTGTATGGGCTGCTATTAACCAAAGAAGACGGTAAAGCCCCAAGTCAGGACAAACAATTTGATGCCGAGGGAGAAGATGGTAATGATGATGAAGGAGACGATGATGATGATGGAGATGGTGGAT | |||||||||
gi|296609339|gb|GW991934.1|GW991934 Ipa.ADAB-aaf14d04.b1 IPA1-seed Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): TACCATTAATAATCATCACATCAAACATTAATTACAATCCAAGATGAGGCGTGATTCAAGGTTCTTCCATGGCTTTCAGGAAGAGAAGAAGACAACGACAAAGAAGGCAGTGATCAATGGCCCACGGCCTTCTCCCTTGATGATCAACAAGGATTCCCATTTGATTCAGAAGCCTTCTTCAGAGCAGAGAAAACCAATCATCATATACACAGTCTCACCAAAGATTATCCACACCAAGGCCCAGGATTTCATGGCTCTTGTTCAGAGACTCACTGGCATGTCATCATCAAATTCCAATAATGAGGCCTCTGAGAATTTTGGGTCGTCTTTGTCAGATGTTTCCAACAACAGCAGCGGCATCAAGCCGCAGCAGATGAATGAAACTAGCTCAGCTCTTAGGAGGGATAATGATATTATTCATGAAGATAATGATGATGATTATGGTGATAATAAGAAACCGGGTGCAAGTATTCATCAGTATAGTCCCAATACTACTAGTCTCATGAATTTTGCTGATATGCCACTCTTCACTCCAAATTCTTCATCAGATATCTTCTGTTCATCAAGATCGCTACTCTTTAAACATTCCGATTCATCACCTTATGGGATTTGGGGTAATT | |||||||||
gi|296605295|gb|GW983966.1|GW983966 Ipa.ADAB-aab38e05.b1 IPA1-seed Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): AGAAGAAGAAACCTTCAATCATGACTGAAGAAACAAAGGGCACACACATGACAATAACAGGCTCCATGAATGAAGAGGATGACACAGTTTTCCTTAAAGTTCAAATTTCCAACCAAAGTGGGAGCACAAGAAACATATACTTCCCATTTGACACCATAAATGACACAGCCATTGATGTGGCAATGGAGATGGTTAAAGAACTTGAAATTAGTGACTTGGAACCAATGGAGATTGCTGAAATGATAGAAGAAGAGGTATCAGCTTTGGTTCCAACATGGAGGGACTTGGGAAATTCTATTAAGTATCAAAGACAACATAGCTTTAACTATGAACAAGAAGAAGATGATTATGATGATGATGATGTTAGCAATAATCACAATCCTTTCTTCTCATTGTCTTCTCCCTCTTCCTCTCATGGTTCTCTCCCAATGCTTTACCAAAATATTACACAAATTGGTGGAAACCATTACCCACTTTCTCATGATTTTGCCTCAAGATGATCCCCTTATGAATGATGATGCAAGCTCTCAAAGTTCTTTGG | |||||||||
gi|296591295|gb|GW974217.1|GW974217 Ipa.ADAB-aae01f01.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): AAACCCTCTTGTTGAACATCGGACAGATCTGGAGCTCCAACACAAGCGCAGATCATCCGCTTTCTCTCACCATCGCCGGCGCCATCTTCCTTTAGTTTCCTCGTACGTATGAGGAGGGGTCCGATTCCTGATGATGATGATGATGATGCTGCTGTTCCGAGGAAGGGGAAGGTTGTCACAACCACCGGGGGGTGGCCGGAACTGCTCCGCTGTGTCACGACAAAACCACCAACCTATCCTTCTGGACGAGCTCATAGCGGAAATCCTGCTGAGGATTACCCGGCGAGGGTCTCTCCTT | |||||||||
gi|296594008|gb|GW975387.1|GW975387 Ipa.ADAB-aae19g07.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): ACTCTTATCCTCAACCCAAACATGGCGACATTCTTTCACCTCTCCAAGTCACTCTCTTCCCCGCTTCCTTTCTTCCGCATTCCTCCGCCGCTTCGCTGGAAACATAGGCCTTCCACGGTGGCCCCCGCTCGTGCGGGCCCCAGCTCAAGTAGCATCGCCTTTGCCATCGGCCTCCCTCTCTCTCTCCTCGCTGTCACCGTCCTCACCTCCCTTCGAATTGCCAATAAACTCGACCAACAATTTTTTGAGGAGATGGCAATGAATGAAGCTATCATGCAAGCTGATGAAGATGACGATGATGATTACGAAGATGAAGATTATTATGATGATGCTGATGATGCTGATGATGATGATGATGATGAAGATGCAGAAACTCCTGTACAACAAGAACCTGCCCTTCCGCGTTCTCGCAACAGGCCTATAAGGGAAGCTTAACTTTCACCCTTTTGGACTTTGAATTACAATTTAATTCAGTGTTGATCTTGTT | |||||||||
gi|296588923|gb|GW973317.1|GW973317 Ipa.ADAB-aad90h07.b1 IPA1-root Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): TCCTTCACAAGCGCATTCTCGATCTGCCTCTTCACTCTTCACACTCACTAGAAACCGCAACCGCCGCAGCCATTCCTTTTCTTTAAGATGGCAGTTACATTGTATGACCTTGGCTCTGCATCTGGGTTGAAGAAGCTTGATGAGTACCTTCTCACCCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACCTTACAGTGTATGCAGCTTTATCAAAAGTTCCATCTGCTGAATATGTGAATGTGTGCAGGTGGTACAAGCATATCGATGCATTGTTGAGAATCTCGGGTGTTTCTGGTGAGGGATCTGTTGTCACTGTGAAGTCTTCTCTCGTCGCTGAAGCTGTTGCCACTCCTCCACCAGCTGACTCTAAGGCTGCTGCGGCTGATGATGACGATGATGATGTGGATCTCCTTTGGTGAAGAAACTGAGGAGGAGAAGAAGGCTGCCGAGGAACGTGCTGCTGCCCCTAAAGGCATCTGGGAAAAGAAAAAAGAGTCTGGGAAAATCATCCTGTTTTTGATGGATAATCAAGCCCATGGGGAATGATGGAAACTGAC | |||||||||
gi|296597122|gb|GW977261.1|GW977261 Ipa.ADAB-aaa30h10.b1 IPA1-seed Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): TTCTTGGCGATCGTCTCGAACGGCTGAAGCTCCATCTTGATGAACATGTAGTTGAGGATGACGATGATGATGAAGAGGATGACGATGAGGATGATGAGGATGATG | |||||||||
gi|296594680|gb|GW979371.1|GW979371 Ipa.ADAB-aaa66c08.b1 IPA1-seed Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA EST sequence (targeted fragment marked with yellow): ATCTGCCCCATAATAAAGAGCACCAACGATTTTAAAGATGGAAAATGATAGAAGAGGGTCCATTATCCCATGGTGACAATAAGAGTGATGATGATGAGGTTGGGATGATTCCATGTTTGGATTTTTCCTTCTATAACATACATATTATTGGGTTGGGATCTCTAGAAGAGTGGAAGATCATGATGAGCAATAAAGTGATCAGAAACATGTGAAAAGCATGGTTACTTTGTGTTAGTGTGTGATGATGATGATGATGAAATATTTCCCAGGGTTTTAAGATAATGTATGGTGATGGGGTTAAAGGAATTGTTTGATTTACCTGAAGAAACAAGAATGAACCACCTAAGCACATCTTAGCCATATAGTATCTACACTATTGATTGCCCTGTTATTCCTCTCAATCATACCTTTGGTGTTTGTGATAGCCATGTCTTCCATGTTTCTCTTCAATTCTCCAGTCTCATGTGGCCTCATGGCAACCCATCTTTCTGTGAGACAGTGAATTCCATAATTTCCAAGTTGCTGGAACTGACTTACATGATCTTGAAGATGATTGACGAGGGTTATGATCTTCCAAAGCACTACATTGACATT | |||||||||
gi|296596018|gb|GW976123.1|GW976123 Ipa.ADAB-aaa09b02.b1 IPA1-seed Arachis ipaensis cDNA 5', mRNA sequence CCATCATCATCATCATCATCA |