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mature miRNA: TGCCTGGCTCCCTGTATGCCA
species: Aristolochia fimbriata
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|166931634|gb|FD760654.1|FD760654 Afi04_216_D09_C014.g1 Aristolochia fimbriata flower bud library Aristolochia fimbriata cDNA

TGCCTGGCTCCCTGTATGCCA
||| ||||||| .|.|.||||
ACGAACCGAGGAGCGTGCGGT

EST sequence (targeted fragment marked with yellow):
GCGTAGGGGGAGATTTTGCTTTTGGGATTTTGATGGGTTGTCCAAATCTTTGGCATTTAAAATAATAAAAGAGGAGATCTCTCTTGGCATGGGGGCTATAAATCCACCTTCTTCATCTCATTCAGTGGCCGCTCTATCTCTCTCCCTCTCATCAGTCTCTCTGCTTTCAATTCCCTCCCTCACATCTCGTCTCTCTCTTTCTCTTTCTCTCTCTCCCTCTCTTTCTCTCTCTTTCTCTCTTTCACTTTCTCTTTCTCTTCTCCTGGCCTTCGTATACCAGACTTGAGTTTCTGGGAAGGTTTTGCAGGGGGAGAAAAAGAAGAAGAAGAAAGAAACACAAAGAAGACGAACAAGCTAGCTACATGATGCAGAGCAGAGTACTTGTGATAAGGAAGGATGAAGGTGAAAAGGGCTGTGCCTGGCTCCCTGTATGCCACACGTAGAGACCCATCTGTTTATGATCGGCTACTGCGGGTGGCGTGCGAGGAGCCAAGCATACCTCCTCCCTCCTCTCTCTCTCTCTCTCTCTCTTGCCCCTCTCTCCATTTCTTTCCCTTTCGTTCTCTCTTTGTGACTCTTTCTCTCGTTCTTTTCTTCTCTTTCTCTTTTCATTTTCTGGGTTTGTTTTGATTTTTATTTTGTATTATGAAATCATATACTGAGGTACTTTCTCTGGTATGCAGATCTATGTACCCATCTCACTTTATATACGTTTAGTACTATATT