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mature miRNA: AAAGGAGGCATCCAAAGGGAT
species: Artemisia annua
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|159651827|gb|EY075981.1|EY075981 CAZI12068.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI12

AAAGGAGGCATCCAAAGGGAT
|||.||.|||| ||||...||
TTTTCTTCGTAAGTTTTTTTA

EST sequence (targeted fragment marked with yellow):
TGGATGCACATACAGATAATAATGAAGCTTTTAAGAACGATAATTCTGTTGCTATACAAATGTTAAGTGTTGAAGAAACACAATGTTTTGGAATAATGATGGAAACACGTGGGAATATTAAAAGTGATTTTGTGTATCTTCAGTTTGGGATTTTGTTTTCGAATTTGTATCAAGCGGATATCACTAGGGTTATAACAGTTAGGTTACCGACAGTGGATAGTGTTTCGGCTTATCTCGATAGTGTTCAAGATGAGGTGGCCGCAGTTTTAGTCGCGAAAAGGAGTCTTTTGAGAGCTAAAAACTTTTCAGAAGCAATTGATGTGCGGAAAACAGTAGATGAAAGGATTAAAGATATTACTAATAAATTTGGAACACAAATGCCAAAATCAAAGCTTTATCAGTTTCCTAAGGAGTTGTCTCATTTGCCTGAGATATTGTTTCATCTTAGGAGGGGTCCACTTTTGGGTAGTATTCTTGGTCATGAGGACGAGAGATCTGTTTTGCGGGATATTTTTTTGAATGCTTCTTTTGACTTATCTTTACGAATGGTGGCTCCGAGATGTCTTATGCATCGTGAGGGAGGCACTTTTGAGGAGTTGCCAGCTCATGATCTTGCTATGCAATCTGATGCAGCTGTCGTTCTTGATCACGGGACAGATGTCTTCATTTGGTTGGGTGCTGAACTTGCTGCTCAAGAAGGAAGAAGTGCAGCAGCATTAGCAGCCTGCAGAACGTTGGCGGAAGAACTGACGGAGACGAGGTTCCCA