| mature miRNA: ATAAATTGGGACGGAGGGAGT species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159656418|gb|EY060961.1|EY060961 CATF12489.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ATAAATTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): ATATTGTTGAAAATGTTTGTGATATGTTTGATAAATCGATTGGTTCGTTTTGGTTTGCTTTTATAATGGGTTTTCATAGTGGATAAGATTTGTTTTTTTTCTCTCTCTTTCGTAAAATAAACCGTGATTTCTTTTTGGTGTTTATAATAAAGTTAATTACTATATACGGAGTAGTTTGAGTTTAGGACCTTTAAGAAATGATAGATTAATATACGACAAAAATAAAATACTCCCTCCGTCCCAATTTATTTGTCCACTTTTGACTTTTGAAATATTTCTTTTGCAACTTTGACCTCAATTATTTCTTTTTGTGTTGCATAATACTTTATGCAAAGTACATGAATTGATTGAATTTTAAATGTATTTTCATTGGGTATAACTTCCATCAAGTATTATATAACACACACAACACAATTTAAGGTCAAAGTTGAAAAAAAAAAGACTTCAAAAGTCAAAAGTGGACAAATAAATTAGGACGGAGGGAGTACTATTTTACTCTCGGTAGAACTATTCACTAAGAAAAGGCACTACCACACTTGTGTTGGAATTTAAAATCACGTCCATTTTAAGTAGTTGAAAATCAGTTATTTTTTTTTTTTTGAAAGGCAAATTATATAANACGCGCAATAGCGCCACCAAAAACAAACCAAGGCATCCACCAAAACCAAATAGATGCACTAGAAAGATAATGTGTAAATAAACTTGTTCTGTGATACT | |||||||||
gi|159653307|gb|EY066750.1|EY066750 CATF9492.rev CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cDN ATAAATTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): AACCAAAATGATGAGCTCTATTTCAAAACCAATTTCTTCACAAATTCATGCCCACTTTAATCCCCCTTCAATATCACATAAAACTTCACTAATCCCGTCTCAATCACACCAATTTAATCTCGTAAAACCAATAAATTTAATTAAAACAAGGCTTAATTCACCACCCAAAGCGAGCACTAGTGGCTTTTGTACAACGTCGTTTTCTGAGGAGACGTTGTACGAGTTGTTAGGTATCTCAGCGAGTGTTTCAGTCTCTGAGATCAAAAGTGCCTATAAACAAATGGCTTTGAAGTACCACTCTGACGTATCACCTCCTGAGCGAGTTGATGAGTATACTACAAGGTTTATAAAGGTCCAAGAAGCGTATGAAACTTTATCGGACCCTGAAGCTCGAGCTATGTATGATAGCTGCATGGCTAAGGGTTTACACTTGGCGTTTTCCGGGAAAGCTGGATCGCGATTTCAAGCAAGATCGGATGAGAAACAACGGTGGAAAACGTCGTGGGAGGCTCAGGTGAACGAGCTGAAAAGACGTAGCGCAGTGGATGAGGGAGGGAGTATGTCGTGGTCAGCCCGAGTACGAAAGCAAAGGAGTGGAAATGGGTTGAACCCAGGTGAATAAGGGTCGGGCTAAGTATGTTAATAACATTTTCTTGTATGATTAGCTGATTATAAATGTTATCTAATACTACATCCGTCCCAATTTATTTGTC | |||||||||
gi|159717788|gb|EY061736.1|EY061736 CATF12923.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ATAAATTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): TTTGGTGGGTTTTGAGGAGGTTTTCTATTTTAATTCAATTAAATAACTTTTTTTATTCTTTCAAAATTGGTCAACCACATGTTTAATCTAATTAATTTTTATCATTTTCATTAACTATTTTTTATATTATATTTTACTTCAATTATCATATAAATAATTTTATTTTCAAAATAATCGTTACTTTTCTCTCTCCTCATCTTCTTTCAAACCAATTCAAATTCAAATTCAAATCCTAAATCCATGTACAAACCAAACGGCCCCCAAATGTACCAAATTGTTCAAAGTAGGCCACAGTGTTAAATGAGACGATGAGTAAAATGGCTTTTACAAGGTGGCCCAATAGGGCCTAATAACCAGCCCATGATCCATTTTATAAACACACAAAGAGTATATATAAAACCCATACGAAGATGCAAACATAAACCCTGATATTATTACCAACTTATTGTCCAAGAAACAATAACCGGTTGAAGATGGACAAGAACAAGATTAAGGTTGTTGAAGATCTGAGTTCATTTACAGCTGAAGATGATGCTCGAATGGCTGTCAAGATCGATCAACTTCATATACGTGACAGGTTCTCTTTTCTCACTAACAATGTGTGTTTAAATAGAGCTAGGCCTTAAATATTACTCTCTCCGTCCCAAATTATAAGTCCATTTTCTACTTTTTAGTGTCC | |||||||||
gi|159656417|gb|EY060960.1|EY060960 CATF12489.rev CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ATAAATTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): TTAGGAATTGTTGGTTTATTTTCCGCCAAAAATAAAATCCTCCTTCCGTCCCAATTTATTTGTCCACTTTTGACTTTTGAAATATTTTTTTGGCAACTTTGCCCTCAATTATTTCTTTTTGGGTGGCATAATCCTTTTTGCAAGGTCCAGGAATGGATTGAATTTTAAAGGTTTTTTCATGGGGTTTAACTTCCTTCAGGTTTTTTTTACCCCCCCCACCCCAATTTAGGGTCAAAGTTGAAAAAAAAAGGCCTTCAAAAGTCAAAAGGGGCCAATTAATTTGGGCCGGGGGGGGTCTTTTTTTCCTTTCGGTGGAACTTTTCCTTAGGAAAGGGCCTTCCCCCCCTTGGGTTGGAATTTAAAATCACGTCCATTTTAGGTGGTGGAAAATCGGTTTTTTTTTTTTTTTGGAAGGGCAATTTTTTTAAAACGGGCAATGGGGCCCCCAAAACCAAACCAGGGCTTCCCCCAAAACCAAATGGATGCCCTGGAAGGTTAAGGGGTAAATAAACTTGTTTTGGGATATTAGGGGGCTTGGGTTTTAACGGTTTTTCTTGTTTTGGGGGGGGCTTTCCAACCAAAGGATTGGGGGTTCAAGTCCTGTTCGGAAAATGGGGGATAATTTTGGGGTTTAATTTTTGGGCCAGTTGGTTGTCGTTGG | |||||||||
gi|159653308|gb|EY066751.1|EY066751 CATF9492.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cDN ATAAATTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): AACCAAAATGATGAGCTCTATTTCAAAACCAATTTCTTCACAAATTCATGCCCACTTTAATCCCCCTTCAATATCACATAAAACTTCACTAATCCCGTCTCAATCACACCAATTTAATCTCGTAAAACCAATAAATTTAATTAAAACAAGGCTTAATTCACCACCCAAAGCGAGCACTAGTGGCTTTTGTACAACGTCGTTTTCTGAGGAGACGTTGTACGAGTTGTTAGGTATCTCAGCGAGTGTTTCAGTCTCTGAGATCAAAAGTGCCTATAAACAAATGGCTTTGAAGTACCACTCTGACGTATCACCTCCTGAGCGAGTTGATGAGTATACTACAAGGTTTATAAAGGTCCAAGAAGCGTATGAAACTTTATCGGACCCTGAAGCTCGAGCTATGTATGATAGCTGCATGGCTAAGGGTTTACACTTGGCGTTTTCCGGGAAAGCTGGATCGCGATTTCAAGCAAGATCGGATGAGAAACAACGGTGGAAAACGTCGTGGGAGGCTCAGGTGAACGAGCTGAAAAGACGTAGCGCAGTGGATGAGGGAGGGAGTATGTCGTGGTCAGCCCGAGTACGAAAGCAAAGGAGTGGAAATGNGTTGAACCCAGGTGAATAAGGGTCGGGCTAAGTATGTTAATAACATTTTCTTGTATGAATAGCTGATTATAAATGTTATCTAATACTACATCCGTCCCAATTTATTTGTCAAAAA | |||||||||
gi|159613021|gb|EY051270.1|EY051270 CATC3061.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ATAAATTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): CACTGATTTTTGGCCACTTTTTTCCGATCTCAGACTATAGTGTGTCGTTTGGCAAATTCAAAATTTGAAGTCACTGAATAGAGCATCGACAGGGAACCTCCAAAGTGCGGAGATCTGGCGCTTAGTGGAGAGAATCAATTTAAGGAGTCGGACATGGACAAAATTACTAAAAATGTAAATTTGGATTCATTTAATCGTCAAAAAACACACTATAAAGGGCGATTCTTGTAAGAAATTTTACAATAAAACCAATAAAATTATTTTAAAACCTCTACGTTGCGATTATAAACAAAGATATATGCACTTAAAGTTGCGATGCTATGTCCGGCCACTTCCATTGGCTCGTTCCACTGTGATGGCACTGCTGAGCGCGAGACTGAATGGATAATTGGCAATTTGATGTTTCAGAGAGACCGTACATCAAATCATTAAAACTCCCAATTCCGACTCAAGTTGTTCTCTCCAATTCTTTCATCAATTACTTATTCCTAGCGCTGCACTTCTTGGGTCCCAATTTATCCAGTGAATTCAACAAATTGCCATAATAATGCAGCGCAGACAATTCATACCCGTTATGAAATTACATTCACGAAGGGGAAAATACCGTATTCAATTTCGCGATTCCTTATTCTCGGTTCCATTTCTCTATTCCCTTTNATGAGAGTCCCGTTTCG | |||||||||
gi|159584627|gb|EY047835.1|EY047835 CATB1121.rev CATB Artemisia annua, Tanzanian, from Sandeman Seeds,1.5-2kb Artemisia annua cD ATAAATTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): GAGCCTATCTTTTCGTTTCGATCTTTGAGCATCTTACTCAAAGTGAGAATTTGTTACACCCCACTTAAATGTACACCCAAATCGCCTTAGCCTACCTTGTATGCACTCACCTTTAGTGCATTATTGTGACAAAATTTGTTAAACCCTTTGTTAATTATCTAATCAATTACATGGTTGCTAAGTCGAGTCATATCCTTGTACATATTGTTTTGGGACGATTGAGACTCATGGGTAAAGTACTAGTGTAATAAAGTAATGGGGAAGAACAACATTATTACCGCCATATGTGCTAAATATTTTAAAAGTACTCAAAGTTTTTCAATTATCTTAATTCGAGTCATTAGAATAGTAATTGTAAAGTTATGTAAAAGTTCAAGTGTAAGGGGAGAACCGAGGCCCCTATGATGTACTCCCTCCGTCCCAATTTATTTGTCTACTTTTGACTTTTGAAGTCTTTCTTTCTCAACTTTGACCTTAAATTGTGTTGTTTATGTTATATAATACTTGATGGAAGTTATACCCAATGAAAATACATTTAAAACTCAATCAATTTATATATTTTGCATAAAGTATTATACAACACACAAAAGAATATTTGAGGTCAAAGTTGTAAAAGAAAGACTTCAAAAGTCAAAAGTGGACAAATAAATTGGGACGGAGGGAGTATTATTTTGGATGGTATGGTAAGAATGTATGCAAAAAAAAATCAAGAAAAATCC | |||||||||
gi|283962979|gb|GW333249.1|GW333249 AAGST_UP_046_E03_31OCT2005_023 AAGST Artemisia annua cDNA, mRNA sequence ATAAATTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): AAATCACCTAAATTCAAAAGTTAAAAGAAGAGCTGAAACAAAATAAGAATAAACATAATTCAAAAAAGTGAAAACAAACAAATCACTATAGTAAAAAAAGTATGGATGAGAGCTTGAAAAAAAAAAAAAAAAAAACTGTTTAATCTAAACTCTCAAGTTAATACCAAAAAAATTAAATTAAATCATATCTAGAGAAAAATAAATACTCCCTCCGTCCCAATTTATTTGTCTACTTTTGACTTTTGAAATATTTCTTTTACAATTTTGACCTCAAATATTCTTTTTGTGTTGTATAATATTTGATGCAAAATATATGAATTGATTGAGTTTTAAATGTATTTTCATTGGGTATAACTTCCATCAAATATTATATTACAAACAACACAATTTAAGGCCAAAGTTGAGAAAGAAAGACTTCAAAAGTCAAAAGTGGACAAATAAATTGAGACGGAGGGAGCAACTTATAAGGAAAAAATCACTTCAAAGCTCCTCTAAAAAAATCATCAAATGAAAATCAAATTTAAC | |||||||||