| mature miRNA: ATAGTACTCCCTCCGTCCCAT species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159584627|gb|EY047835.1|EY047835 CATB1121.rev CATB Artemisia annua, Tanzanian, from Sandeman Seeds,1.5-2kb Artemisia annua cD ATAGTACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): GAGCCTATCTTTTCGTTTCGATCTTTGAGCATCTTACTCAAAGTGAGAATTTGTTACACCCCACTTAAATGTACACCCAAATCGCCTTAGCCTACCTTGTATGCACTCACCTTTAGTGCATTATTGTGACAAAATTTGTTAAACCCTTTGTTAATTATCTAATCAATTACATGGTTGCTAAGTCGAGTCATATCCTTGTACATATTGTTTTGGGACGATTGAGACTCATGGGTAAAGTACTAGTGTAATAAAGTAATGGGGAAGAACAACATTATTACCGCCATATGTGCTAAATATTTTAAAAGTACTCAAAGTTTTTCAATTATCTTAATTCGAGTCATTAGAATAGTAATTGTAAAGTTATGTAAAAGTTCAAGTGTAAGGGGAGAACCGAGGCCCCTATGATGTACTCCCTCCGTCCCAATTTATTTGTCTACTTTTGACTTTTGAAGTCTTTCTTTCTCAACTTTGACCTTAAATTGTGTTGTTTATGTTATATAATACTTGATGGAAGTTATACCCAATGAAAATACATTTAAAACTCAATCAATTTATATATTTTGCATAAAGTATTATACAACACACAAAAGAATATTTGAGGTCAAAGTTGTAAAAGAAAGACTTCAAAAGTCAAAAGTGGACAAATAAATTGGGACGGAGGGAGTATTATTTTGGATGGTATGGTAAGAATGTATGCAAAAAAAAATCAAGAAAAATCC | |||||||||
gi|159651172|gb|EY066723.1|EY066723 CATF948.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cDNA ATAGTACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): AACCAAACGCCCACATAGACTGCTGAGCTTAAACTATAAGCCATGCATTTCACTCAGTGAGTAAACGAGCTGGTCCAAGATCGTGCTTCTTTCACATACCTAAATTTCATTTCGAATGTAACGACACAATATGCACATCCAAAAAACAGAACAGAAACAGGGGATGCTTTAATAATATACAGTTTGTGACTTTGTTCTTTCGAAGACTCTAGATTTACCATAGGCATCTGGCACACTTTCTTCCATATTTCTTAAGCAAGTTCGAATTTGAATATCATATGCTCTTATTTTTTAGGCTCGTCATCGCATAATGAACATAAAACTGAGTTAACATATCTTTGCCTATGTACTCGATGTTGACATGGCCTGGTACATGATTTCACCAATTCTTCCAAGAGAGTATATTGAGTTCCTTGAAACCAACTTATTCCCTCTAGTAATAATCATGATTACTACTCCCTCCGTCCCAAAATAAATGTCCAGTTTGACTTTTCCGAGTCAAACTGGTTCAACTTTGACCTTTAATATTTTCTTTGTGTTATATACTGTAATACTTAATGAAAAATTATACCAACAAAAAATACACTTAAAACCCAATTCATTCATATATTTTGCATTAAGTATTATATAACACCCGCAAAAATAAATAAAGTAAAAGTTGAACCAGTTTGACTCAGAAAAGTCAAACTAGACATTTATTTTGNGACGGAGGGAGTATTACTATTATTACTATAATTTTAGTTGTTGTTATCCTTT | |||||||||
gi|159663484|gb|EY052315.1|EY052315 CATC3671.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ATAGTACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): TTGTGGGTGTTATATAATATTTGATGCAAAATATATAAATGGGTTGAGTTTTAAGTCTACTTTTCAATGGTATAATTTCTCATCAAGTATTATATAATAAAATATATATATTTTTGGTCAAAGTTAAACCACTTTGACTTTGAAAATTCAAAGTGGACAATAATTTTGGGACGGAGGGAGTACAAGTTATGATTTGTTAAAAAGTGTATGGTCGTAAACTTGACTTCTGTAAGCCAACTAAGTTTGTTTGTGATTTAAGTTCATGCGCATATTCATGTTCAGAGCATCTCCAATGATATGGACTTTATCAATTCCATACCGTTGACCACCATTTTTTATCTTTACCCAATGTTTCCTTTATATCTTTATGTAGATGTGTTGGAATGGGCTGGTCGGGTAACATGTCAAATGCGGTTAGCGCAAAATTGGTACATTCTGATATAGTTTGAAACAGGTTGGATCAGGTTGACGGTTGACTCAAGGCGCTTTCTGGAAAAAAAAAA | |||||||||
gi|159656418|gb|EY060961.1|EY060961 CATF12489.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ATAGTACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): ATATTGTTGAAAATGTTTGTGATATGTTTGATAAATCGATTGGTTCGTTTTGGTTTGCTTTTATAATGGGTTTTCATAGTGGATAAGATTTGTTTTTTTTCTCTCTCTTTCGTAAAATAAACCGTGATTTCTTTTTGGTGTTTATAATAAAGTTAATTACTATATACGGAGTAGTTTGAGTTTAGGACCTTTAAGAAATGATAGATTAATATACGACAAAAATAAAATACTCCCTCCGTCCCAATTTATTTGTCCACTTTTGACTTTTGAAATATTTCTTTTGCAACTTTGACCTCAATTATTTCTTTTTGTGTTGCATAATACTTTATGCAAAGTACATGAATTGATTGAATTTTAAATGTATTTTCATTGGGTATAACTTCCATCAAGTATTATATAACACACACAACACAATTTAAGGTCAAAGTTGAAAAAAAAAAGACTTCAAAAGTCAAAAGTGGACAAATAAATTAGGACGGAGGGAGTACTATTTTACTCTCGGTAGAACTATTCACTAAGAAAAGGCACTACCACACTTGTGTTGGAATTTAAAATCACGTCCATTTTAAGTAGTTGAAAATCAGTTATTTTTTTTTTTTTGAAAGGCAAATTATATAANACGCGCAATAGCGCCACCAAAAACAAACCAAGGCATCCACCAAAACCAAATAGATGCACTAGAAAGATAATGTGTAAATAAACTTGTTCTGTGATACT | |||||||||
gi|159747753|gb|EY059305.1|EY059305 CATF11518.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD ATAGTACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): CAAACTGGTTCAACTTTGACCTTAACTATTTTTGTGGGTGTGATATAATAGTTGATGAAAAATATGTAAATAGATTGTGTTTTAAGTGTACTTTTCAATGGTATAATTTTTCGTCAAGTATTCTATACCACATAAAAAATATTTAAGGTCAAAGTTGAACCAGTTTGACTCTGAAAAGTCAAATTGGACACTTATTTTGGGACGGAGGGAGTATTATTTATCAACTTCGGAAAACGGGCCGTTGATAAATGTACTATAAAGACAACTAGTGAAGAATAATAAAACATTACTCATGGGAAATCGATCCTCCTAGAAAAAAAAATAATTAATCGAGACAGCCGTCACTTTCATTCCCGCAAAAAGTTCTGGTCGTTTCTTATTAATTCTCACAGATTGTTGTTTGTATTCATTAACCCAATATAATTACTCCACCTCATCCAATAAAGCCCATGCAACTCATGCAAATAATATATTGAATGTGCACCTTGTTTACACGATCTACAAACAATAAAATCAAACCCTTCAACATCTCNNAAAAAAAAAAAAAAAANAAAAAAA | |||||||||
gi|159752947|gb|EY053269.1|EY053269 CATC4212.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c ATAGTACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): ATGTTCATGGATAAATATTACTCCGTTTTTCATAATATAAGCGTCCGCATTACTACCTCTGGCCCACATTAAGTGTCCACTTTTACTTTTCAAAGTCTTTTTCCTTTAACTTTAACCTTAAATATATTTGTTTGTGTTATATAAAAATTAATGAAAATTATACAAATAAAAATACATTTAAAAACTTCATCCATCCATATATCTTGCATCAAGTATTACATAACACGAACAAAAAAATTTAAAGTCAAAGTTGAAGACAAAAGACTTAAAAAAGTCATAGTGGACACTTAATGTGGGACGGAGGGAGTATTATTTTAAGATATTTTAAAATAAATGAAACTGTAGTTAGTAAAATTTTATGTTTTCTGAAAAATAAACGCTAGTTATGAGATGAAAGGAGTAATATATTTTTGTCAAAAGTACAAAAACGTTTAAGTGTGGTGTGATTTGTATGTGAAAGAAGATACTTCTTGTGCCACAGTGCAAAATTAAAGGATGTTTGAATTAACTTACTTCAACGGTTTACAGGGTTATTAGGTTTGTCAGAAATAAAATTTGCTTTGACCCGAAACCCCCTTGAAATGACACGCTGGCTGATGACATCAAAATTTTATCTCATTCTTAGATTTCTAGTAGA | |||||||||
gi|159632149|gb|EY069305.1|EY069305 CATG2270.rev CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA ATAGTACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): TTTCATATCACAGTAACTCATGCTTACCATTTGATATTTATATTCCCGTTACTAATAATTTAGCCGTATTTAATATTCAAACCCGTGTATGCATAAATTAAACTTTTAGATAGAATAACATGAGTCCTTATTTAAAAAAATATTCTAATGGATGAAAGTCTACAACTAACACTATTAAAACTAATTCGCATATTTACAAAATTTTCTAATTTAAATAGATGAAAGTCTGAAACTAATACTAATACTCATGTCATTTTAAATAAAGTTCATATTATAAAGTATAAGGGGTATAAAGTGTAAGGGTTTATTTGTGTTTTTTTTAAGTTATTAAAAAACATGGAAACTTGTAATTTTACAATTAGCTCAATATATTTTATGTAAAATTCAACCACTAAAGTTTTATTAATTACTTTCTCTTTTTTTTAATTTTTTATTTTCATAAATTTGACACCTATATTTTTATGCATTTTTTTTTTCTTAACCAAATTTATCCACCAAATTTATTAAGTTTGACTAAAACCAATTCAATTTTGACTTTCTATTGACCAATCATATTGCTCGATTTCGTCTACGTGGCAAAATCGAGCTCTCCTATTGGTCTAATTTTTTTTTTTCAATGAGAAAGGTTTTGCAAAAACACTTCGAAATGATGTAATTCTTTTATTATATAAAAGATATAAAAAAAATAATAATATTTACACTTATTATGGGACGGAGGGAGTACTTCAATATTATTATACATTAAATGGAAAGCATGCATATGCTACGCCG | |||||||||