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mature miRNA: ATCATGCTATCTCTTTGGATT
species: Artemisia annua
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|159668840|gb|EY070962.1|EY070962 CATG3473.fwd CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA

ATCATGCTATCTCTTTGGATT
||||| ||||| |||||.|..
TAGTAAGATAGTGAAACTTGG

EST sequence (targeted fragment marked with yellow):
CGGCCGGGGTTACTGTTATATCGATAAAGTGAAAATGATATTGTTACATGTAGTTGACGTAAATAGATCACAGGGACTTTGTATATATGTATGTTTTGATTCTAGTTAGTCTTGAATTCTGATGGTTATGAAGTAGTTGGCCAACACGTCAGCATTCTATTGGTTAGTTTGTTACATTAGTTAGTGTCTTTGCTAGCGTTACATGTGGTTCAAAGTGATAGAATGATAGATCATATGAAAACTTTGTGTTCCTTGAGGAAGTGTAAAATGTTTTGAAGATGTGTCAATGTGTGTTTAGTTATCAGTTATGTAGGTTTGGAATGGTTGTGATATGATTTTGAATGCTTGGGTGTAGGTTGCAGGGGAAACGGAAACAAAGGCTCAGATTAAGCTGCGTTTCAAGACAGCGGCAGGTAAAGATGTGGTGTGTATAAGATCGTTTCAGTTGACTCAGAAGGCTTCGAAGATGGAGTATAAGGCGATTGAGAGTGTCTTGCAGACTATAAATCCTCACACTGGCGAGGTACTTAAAATGGTTCTTTAACATCTGNGATTATTAGCTATGCATATTTGTAGCTGTTTGAGATTTTTATTGGATTTTATTTGTCTATGATGTATTGTTCTGC