| mature miRNA: CCTGCACCTGCACCTGCACCA species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159619581|gb|EY091650.1|EY091650 CAZI2010.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI201 CCTGCACCTGCACCTGCACCA EST sequence (targeted fragment marked with yellow): CAAATGCAGATTGCAGGCCCAAGGGGCAGGTGCAAGTGCAAGTGCAGGTTCAGGCGTGGTGGCAGAAGCTGGTGCAGCTGTCACAGCTGCGGTTAAGTATGGTGGTCCAATGGACGTAGCAAAGCAGGTTTTGAGGACTGAAGGAGGTGTTAGAGGCCTTTTCAAAGGATTATTTCCCACACTGGCTCGTGAAGTCCCTGGAAACGCTACAATGTTTGGTGTCTATGAGGCTATAAAACAATATATGGCTGGTGGAACCGACACCTCTGGGTTAGGCCGTGGTTCACTGATGATGGCAGGAGGCTTAGCAGGAGGTGCATTTTGGGGGGCCGTTTTCCCAATTGATGTTATCAAGAGCGTGATTCAGATTGATGATTATAAGAACCCTAAGTATTCCGGGTCGATTGATGCTTGCAAAAAGATTCTTAAATCTGAAGGAATCGGAGGTTTGTATAAAGGTTTCGGACCTGCAATGGGTCGAAGTATCCCAGCTAATGCTGCTTGCTTTCTAGCTTATGAAGTCACGAGGTCAAGATTGGGCTAAACATGATCGACATTAATTTCTCATGATCTTTAACATTCATTGTAATGAATATTATTGCCATTGGAATAGTCCTTTTTTTTATGTAATGTAACCTCCAAATCCAGTGTTATCAT | |||||||||
gi|159640152|gb|EY108820.1|EY108820 CAZI5948.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI594 CCTGCACCTGCACCTGCACCA EST sequence (targeted fragment marked with yellow): CATTCCCTCAAAAACACAACCTCACAACTATGTTAATCCCAACATGAAAGAGCGTCAAAGATGGCAGCCTGAAGAAGACGCTTTACTCCGTGCTTACGTCCATCAGTACGGCCCAAAAGAATGGAACCTCATTTCTCACCGCATGTCCAAACCTTTGGACCGTGACCCAAAATCTTGTCTAGAAAGGTGGAAAAACTATTTAAAACCCGGTATAAAAAAAGGCTCCTTAACCCCTCAAGAACAGTCTCTTGTTATCTCGTTACAAGCTAAATACGGTAACAAGTGGAAGAAAATTGCCTCCGAGGTTCCTGGCCGTACTGCCAAGCGATTAGGAAAGTGGTGGGAGGTTTTTAAAGAAAAACAAGCTAAGCAACAGCTGCAAAATAGTAAAAAAAACAATATTGGGTCTTCGGGTTCGGATATTAGTACTTTACAAGGTGGTAATATTAGTACGTCTGTTGGGGCTGTGTCTGGGGAGCCTGAGAAAGCGGTTCAAGGTACTTACGATCATATATTGGAGACTTTTGCGGAAAAGTACGTTCAGCCGTACTTGAATCCAGCATCAGTAGTATCGGTACCAGTACCGGTACCCGTGATGCCGAATTTGAATTCTCCTATTTTGTCTCTAGGGTCAGGTGCAGGTGCAGGCGCAGGGAGTATTTCTGCGCCTGTTGCACCTGACCCTGGTTCCATGGTGGCAGCTACTCTGCCACCATGGATGAGTAACAGTAGTGCCTCCTCTTCGACTACTAAGTCGACTACACCCTCTCCATCTGTTA | |||||||||
gi|159732422|gb|EY104178.1|EY104178 CAZI3583.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI358 CCTGCACCTGCACCTGCACCA EST sequence (targeted fragment marked with yellow): TGCAGATTGCAGGCCCAAGGGGCAGGTGCAAGTGCAAGTGCAGGTTCAGGCGTGGTGGCAGAAGCTGGTGCAGCTGTCACAGCTGCGGTTAAGTATGGTGGTCCAATGGACGTAGCAAAGCAGGTTTTGAGGACTGAAGGAGGTGTTAGAGGCCTTTTCAAAGGATTATTTCCCACACTGGCTCGTGAAGTCCCTGGAAACGCTACAATGTTTGGTGTCTATGAGGCTATAAAACAATATATGGCTGGTGGAACCGACACCTCTGGGTTAGGCCGTGGTTCACTGATGATGGCAGGAGGCTTAGCAGGAGGTGCATTTTGGGGGGCCGTTTACCCAACTGATGTTATCAAGAGCGTGATTCAGATTGATGATTATAAGAACCCTAAGTATTCCGGGTCGATTGATGCTTGCAAAAAGATTCTTAAATCTGAAGGAATCGGAGGTTTGTATAAAGGTTTCGGACCTGCAATGGGTCGAAGTATCCCAGCTAATGCTGCTTGCTTTCTAGCTTATGAAGTCACGAGGTCAAGATTGGGCTAAACATGATCGACATTAATTTCTCATGATCTTTAACATTCATTGTAATGAATATTATTGCCATTGGAATAGTCCTTTTTTTATGTAATGTAACCTCCAAATCCAGTGTTATCATGCTATTTATAACTTATATCTGACGTATTAAAACGTGGTATGTTC | |||||||||
gi|159640152|gb|EY108820.1|EY108820 CAZI5948.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI594 CCTGCACCTGCACCTGCACCA EST sequence (targeted fragment marked with yellow): CATTCCCTCAAAAACACAACCTCACAACTATGTTAATCCCAACATGAAAGAGCGTCAAAGATGGCAGCCTGAAGAAGACGCTTTACTCCGTGCTTACGTCCATCAGTACGGCCCAAAAGAATGGAACCTCATTTCTCACCGCATGTCCAAACCTTTGGACCGTGACCCAAAATCTTGTCTAGAAAGGTGGAAAAACTATTTAAAACCCGGTATAAAAAAAGGCTCCTTAACCCCTCAAGAACAGTCTCTTGTTATCTCGTTACAAGCTAAATACGGTAACAAGTGGAAGAAAATTGCCTCCGAGGTTCCTGGCCGTACTGCCAAGCGATTAGGAAAGTGGTGGGAGGTTTTTAAAGAAAAACAAGCTAAGCAACAGCTGCAAAATAGTAAAAAAAACAATATTGGGTCTTCGGGTTCGGATATTAGTACTTTACAAGGTGGTAATATTAGTACGTCTGTTGGGGCTGTGTCTGGGGAGCCTGAGAAAGCGGTTCAAGGTACTTACGATCATATATTGGAGACTTTTGCGGAAAAGTACGTTCAGCCGTACTTGAATCCAGCATCAGTAGTATCGGTACCAGTACCGGTACCCGTGATGCCGAATTTGAATTCTCCTATTTTGTCTCTAGGGTCAGGTGCAGGTGCAGGCGCAGGGAGTATTTCTGCGCCTGTTGCACCTGACCCTGGTTCCATGGTGGCAGCTACTCTGCCACCATGGATGAGTAACAGTAGTGCCTCCTCTTCGACTACTAAGTCGACTACACCCTCTCCATCTGTTA | |||||||||
gi|283961053|gb|GW328780.1|GW328780 AAFB_UP_010_B07_08SEP2004_061 AAFB Artemisia annua cDNA, mRNA sequence CCTGCACCTGCACCTGCACCA EST sequence (targeted fragment marked with yellow): GATCAGCAAACATCAAAATCCAAACAAACACCTTATCCACCAATCACACCTTCATTCATCAAATGAGTTACATCAACAGCATAAACAAAAAAACCAAAAAACAAGACCCACCCATATGGAAATTCAAGGGACTAAAACTAACCAACGAGTCAGAAAAGTATCACTCAGTAACCAGTTTCATTAACGAAAAAACAAAACTAGAAGACTCAGTTTTGGGCCCAGGTGCAGGTGCGGGTGTTGGGTGTGGAGCTGGAGTGGGTTTTGGGTTGGTGGGTGGAATGGGTTTTGGTGGGTCGGGTTGGAATCATTTAAGGGTTGCGTTTGGGTTTGGGATTGGGTGTGGAGTTGGAGCTGGGTTTGGGT | |||||||||
gi|159773634|gb|EY076219.1|EY076219 CAZI12187.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI12 CCTGCACCTGCACCTGCACCA EST sequence (targeted fragment marked with yellow): TTTTTAAATTTCATATGGGAATTCATTTATAAGATATACCCATTTGTGGATTGTTTGAGTTATTGGAGGAAATTTTATTTGATCAATTTCTAGTGGGCTTATCAGATAATCTGCAAAGATGGGTGAGGTAGCAAAGGACTTGGCCGCCGGGACAGTTGGAGGTGTAGCCCAATTGGTAGTTGGACACCCGTTCGATACCATTAAGGTCAAACTACAGAGTCAACCTACTCCACTACCGGGTCAACTCCCCAAATACTCTGGTGCGATAGACGCTGTCAAACAGACATTAGGCGCTGAAGGTGCAAGAGGGCTATACAAAGGAATGGGTGCCCCACTTGCCACTGTGGCAGCCTTCAATGCTCTCTTGTTCAGTGTTAGGGGTCAAATGGAAACAATTTTGAGGTCTGAACCGGGTGCACCCTTAACCGTGCAACAGCAAGTGATTGCTGGAGCTGGTGCTGGAGTCGCTGTCTCCATCTTAGCCACCCCCACCGAACTAATCAAATGCAGATTGCAGGCCCAAGGGGCAGGTGCAAGTGCAAGTGCAGGTTCAGGCGTGGTGGCAGAAGCTGGTGCAGCTGTCACAGCTGCGGTTAAGTATGGTGGTCCAATGGACGTAGCAAAGCAGGTTTTGAGGACTGAAGGAGGTGTTAGAGGCCTTTTCAAAGGATTATTTCCCACACTGGCTCGTGAAGTCCCTGGAAACGCTACAA | |||||||||
gi|159762940|gb|EY107338.1|EY107338 CAZI5206.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI520 CCTGCACCTGCACCTGCACCA EST sequence (targeted fragment marked with yellow): CAAATGCAGATTGCAGGCCCAAGGGGCAGGTGCAAGTGCAAGTGCAGGTTCAGGCGTGGTGGCAGAAGCTGGTGCAGCTGTCACAGCTGCGGTTAAGTATGGTGGTCCAATGGACGTAGCAAAGCAGGTTTTGAGGACTGAAGGAGGTGTTAGAGGCCTTTTCAAAGGATTATTTCCCACACTGGCTCGTGAAGTCCCTGGAAACGCTACAATGTTTGGTGTCTATGAGGCTATAAAACAATATATGGCTGGTGGAACCGACACCTCTGGGTTAGGCCGTGGTTCACTGATGATGGCAGGAGGCTTAGCAGGAGGTGCATTTTGGGGGGCCGTTTACCCAACTGATGTTATCAAGAGCGTGATTCAGATTGATGATTATAAGAACCCTAAGTATTCCGGGTCGATTGATGCTTGCAAAAAGATTTTTAAATTTGAAGGAATCGGAGGTTTGTATAAAGGTTTTGGACCTGCAATGGGTCGAAGTATCCCAGCTAATGCTGCTTGCTTTCTAGCTTATGAAGTCACGAGGTCAAGATTGGGCTAAACATGATCGACATTAATTTCTCATGATCTTTAACATTCATTGTAATGAATATTATTGCCATTGGAATAGTCCTTTTTTTATGTAATGTAACCTCCAAATCCAGTGTTATCATGCTATTTATAACTTATATCTG | |||||||||
gi|159669215|gb|EY095098.1|EY095098 CAZI2205.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI220 CCTGCACCTGCACCTGCACCA EST sequence (targeted fragment marked with yellow): TCAAATGCAGATTGCAGGCCCAAGGGGCAGGTGCAAGTGCAAGTGCAGGTTCAGGCGTGGTGGCAGAAGCTGGTGCAGCTGTCACAGCTGCGGTTAAGTATGGTGGTCCAATGGACGTAGCAAAGCAGGTTTTGAGGACTGAAGGAGGTGTTAGAGGCCTTTTCAAAGGATTATTTCCCACACTGGCTCGTGAAGTCCCTGGAAACGCTACAATGTTTGGTGTCTATGAGGCTATAAAACAATATATGGCTGGTGGAACCGACACCTCTGGGTTAGGCCGTGGTTCACTGATGATGGCAGGAGGCTTAGCAGGAGGTGCATTTTGGGGGGCCGTTTACCCAACTGATGTTATCAAGAGCGTGATTCAGATTGATGATTATAAGAACCCTAAGTATTCCGGGTCGATTGATGCTTGCAAAAAGATTCTTAAATCTGAAGGAATCGGAGGTTTGTATAAAGGTTTCGGACCTGCAATGGGTCGAAGTATCCCAGCTAATGCTGCTTGCTTTCTAGCTTATGAAGTCACGAGGTCAAGATTGGGCTAAACATGATCGACATTAATTTCTCATGATCTTTAACATTCATTGTAATGAATATTATTGCCATTGGAATAGTCCTTTTTTTATGTAATGTAACCTCC | |||||||||