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mature miRNA: CTTGTCGCAGGAAAGATGGCA
species: Artemisia annua
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|159645219|gb|EY109636.1|EY109636 CAZI6380.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI638

CTTGTCGCAGGAAAGATGGCA
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GAACAGCGTCCTTTCTACCGT

EST sequence (targeted fragment marked with yellow):
TACTTACTAAACCGTGAGGGCATAGATGAAGATATCTTGTGGGCGTCCATTTCAAATAACTCCTTGATGTCTATTGCTGCGCTGTTAAAGCAATGTTCATTTTTAGTTAAAGGAAAGGGCCAATTTAAGGATGAATTTGTCACAGCTGGAGGGGTTCCATTGTCCGAGATCTCATTGAAAACTATGGAGAGTAGGATTCGACCACGTCTGTTTTTTGCTGGAGAGGTGCTGAATGCGGATGGGATTACAGGAGGTTTCAATTTCCAGAACGCTTGGTCAGGTGGGTATATTGCTGGAACAAGTATAGGCAAGATGGCAGCCACATCAGCACCTGCTATTTTGACGGAACATGCTGTGTGAAACTTCGATGGATCAAACAACGCAGGTTTTCATCTGCAACCGTAGCATGAATGGTTTGAGGACCATCTGCATTTTTGACCTGTAAGTTGTATTAAACATAGTTAATCTCTAATAGAAGGTGTTGACAACTCGAAACTGTACATACCTTTTATAGAAATGCCACAAAAGTGCTAACAAGTAACAACACACACATTGGGCTGAAAACATACGAGGAAAGGAATATAAAAGAATTCATGTAGCAGGAAAATGGCACTTGTTTCTGTCATGATAATTTTAGCTGGCCGAAATTGTACATGCAGCGCTAAGTGCCATCTTTCCTGCGACAAGAATTCTTTATCTCCTATTTTTCTTCTTTC