| mature miRNA: GAATCCTGATGATGCTGCAGC species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159599483|gb|EY110758.1|EY110758 CAZI6968.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI696 GAATCCTGATGATGCTGCAGC EST sequence (targeted fragment marked with yellow): GAAATAGCAATAGGAAAGGGATCTTCAAATGTTTTTCCTTTGCAAGGGCTTTCAAACTTGGCCTGGCAAGTGCAGGTGCAAATGCAGATGCAAAATCAAATGCTAAGAAGCCCCGGTGTGGCTCTTCCGGTTCCTGTTTCCTTTTACGCAGCATCATCAGGATTTTTTTTTTCCATTCCCGTGTTTTCAAATTCCCCTTTCCAGTCAAATAACAAGACTTATCACAATTTTTCCATCCGAATGCCGACGGGTACTTCCTTATACTACCCAAATAATCATATTGGTTAAAACCATATGCCATTTGAGTACTGAGACCAGACACTGATTGTAAATTGCTTTCAATGGCAAAGCTCACTGGCATACCCCTAGTGGCACATAATTCATTTTCACTTTTGTGTGTAAAAACAATACAAAAGGGTGAAAATTTCGGTGATGAACATAAGCAGACCCCGTAACGTGTGATTATTGTTGGTTGGAAAAAAAAAAAAAAAAAAAAAGG | |||||||||
gi|159695094|gb|EY070158.1|EY070158 CATG2878.fwd CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA GAATCCTGATGATGCTGCAGC EST sequence (targeted fragment marked with yellow): GTTCAATACATATGTATGCAAATAGTGCTGCAGCATCATCAGGATTCCCACAACAGAGATTTAACATGAGACAACAAGCAGCTCCACCCCATACTCAAACATGGATGCACAACAATGGCTATAGTGCCACTTTATCATGAACCATACCCCAAAGATCTTATATGTAAAATATGCATGCACACCCTCAAGGCCTCAACTCTAGCTTCTGTTTTGTCTGTAAAGATCAATCATCAATGTTTTGTTTGAAGAATTGCTAGCTAGCTATACTAGGGTTCTTCATCTCTTGTATTGAATGTAACCAAAGGAAGAAGTGTTTTCTTTCCTTTCTTTCTTTGGATTTGGACGTTTAATTTTGAAGGAAAGCTGAAAGATGTTTTAGGATGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCT | |||||||||
gi|159757604|gb|EY077199.1|EY077199 CAZI12674.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI12 GAATCCTGATGATGCTGCAGC EST sequence (targeted fragment marked with yellow): CAAGGGCGTATGACAAAGCTGCCATCAAATGTAATGGCAGGGAAGCTGTTACCAATTTTGAGCCAAGCATATATGGGACAGATATAAGCTTGGAAGCTGTGGATGAAGGCGGTCATAATCTTGATCTCAACCTATCGGTTTCTTCCGTTGCAAACAGTCCGAAGCGGAATCACAATGTACAGAATCTGGATATGTGTTTTACAACCACTGAATTACCTTATGAGAAAAGACTGAAGGTTCAGCCTCATCCACCCACAAGTGTGCATGGACAAACAGCAGTATCTCATCATCATCCCCCCGCAAATGTACATGGACAATCAGCAGTATCCAAGCACTACCCTGTTTCACAGGTTCAGCATCATCCCCCCGCAAATGTACATGGACAATCAGCAGTATCCAAGCACTACCCACTATGGTCTAATATGTATACTAGTTCTACACCAAACTATGAGGAAATAGCAATAGGAAAGGGATCTACAAATGTTCTTCCTTCGCAAGGGCTCTCAAACTCGGCCTGGCAAGTGCAGGTGCAAATGCAGATGCAAAATCAAATGCTAAGAAGCCACGGTGTGGCTCTTCCGGTTCCTGTTTCCTCTTACGCAGCATCATCAGGATTCTCTTCTTCCATTCCCGTGTTCTCAAATTCCCCTTTCCAGTCAAATAACAAGACTTATCACAATTCTTCCATCCGAATGCCGACGGGTACTTCCTTATACTACACAAATAATCATATTGGTTAAAACCATATGCCATTTGAGTACTGAGACCAGACACTGTGATTGTAAATTGCTTTCAATGGCAAAGCTCACTGGCA | |||||||||
gi|159682433|gb|EY052859.1|EY052859 CATC3975.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c GAATCCTGATGATGCTGCAGC EST sequence (targeted fragment marked with yellow): ACTCACCATTCTAACTCGATCCGATTTGGATTTAGTCGACCTCCGGCGTCGGGGTCGGGTTGGTTTGACGGAAACAGAAGAAATGAAACCGAGACATTCCAACTTCTGAATCAGACACACCATCAGTCTCCTAACGGAATGTTTATGGGTAACAATGAAGGACATGGATACGGGCATTTCATTCGGACCACAAACCCGACCATGCTTCATACATTCAACCCAAGTACTGTTAACTCAATGAGTCATCAAATGCAGTTTACAAGCAGCACCAGCACCGCATACCCTGGAGGAAATAATCCATCTCTACACCAAATGTATGCAAATAGTGCTGCAGCATCATCAGGATTCCCACTTCAAAGATTTCACGTCCGACAACCCCCGTGATAACCATCTTTTCAATTGTCTAGCTTCACGTACAGTCATGATCAACAATTATTTTCCGAGTCAAGTGCATGCGCTTCTCCCTGTGCTTTTGTGACCTCATACGAAGATCGACATTTTTGAGTTAACCAATCTACCATTACGAGACAGTCGACCTCCTTAGATAGCTATCTTTTTGTTTTTCTTTTTTATTTTAGTATGGGATGTATAAAANAATATTTCATGTGTTAATGGTGGAAATTTTTATTAGATCTCG | |||||||||
gi|159737470|gb|EY107505.1|EY107505 CAZI529.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI529 GAATCCTGATGATGCTGCAGC EST sequence (targeted fragment marked with yellow): TCTGAATTTAAGCTTGGGAATTTCAACATCTTCTCCCGGAGTGGGATCAAGTAAAAATCGAAATGTAGAACCATCCCACTTGAATTATATGCAGGACACTCGAAGATTACAGCATTTGGAGAACCCTGTTTTAACGACAGCAGGTATAACACCTTTTAAGGGACTACCATTTACTTCAGGACACTTTCCTTCATGGAACGGTGTATACAATACATTTGTTCCCAACTATGAGGGAAATATGACAAGTGCTGGGACCATAACGGGGCCGTCGCAAGGACCGTTTAATTGGGGGTGGCAACTGCACGGTCACAATCACATGTCAGTTGCATCAGCAGCAGCATCATCAGGATTTTCAGCTCCGGTAGCCACTTCTATCTTGCCATTTGGCAGCCATCACCCAAGAAATACCGTTTCAGTGGCGGCTTTCAACAGTCATTATCCTCCGTCCATGGCCGCCACAAGCTCTTCCCAATACTATTACCAGATAAGGCCACCACCTCCACCTCCTCCACCTTAATTTTTTGTACATGAATGATGTTCATATTGACCGATTGACTGATTGTTTCATATAATTATTGTTGCTCATGGCCATTTCTATATAGGGCCCATGGTGCTAAGTAGCAAAATGTCTGATATATGTGTGTTTTTGTGTGTAAAAGACAATGAATCAATGAGCACTATGTTTTGCTACT | |||||||||
gi|159695093|gb|EY070157.1|EY070157 CATG2878.rev CATG Artemisia annua, Tanzanian, from Sandeman Seeds, 2+kb Artemisia annua cDNA GAATCCTGATGATGCTGCAGC EST sequence (targeted fragment marked with yellow): GTTCAATACATATGTATGCAAATAGTGCTGCAGCATCATCAGGATTCCCACAACAGAGATTTAACATGAGACAACAAGCAGCTCCACCCCATACTCAAACATGGATGCACAACAATGGCTATAGTGCCACTTTATCATGAACCATACCCCAAAGATCTTATATGTAAAATATGCATGCACACCCTCAAGGCCTCAACTCTAGCTTCTGTTTTGTCTGTAAAGATCAATCATCAATGTTTTGTTTGAAGAATTGCTAGCTAGCTATACTAGGGTTCTTCATCTCTTGTATTGAATGTAACCAAAGGAAGAAGTGTTTTCTTTCCTTTCTTTCTTTGGATTTGGACGTTTAATTTTGAAGGAAAGCTGAAAGATGTTTTTGGGTGGG | |||||||||
gi|159623690|gb|EY098033.1|EY098033 CAZI23537.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI23 GAATCCTGATGATGCTGCAGC EST sequence (targeted fragment marked with yellow): ATGGTCGTTTTGTTAAGGATCGTCATTCTGACTCGATCCAGCTTGGATTTAGGAACACGGGATTAATAAGTGAGGCAACATCATCACAATTTCTTAGCCATACAGTTCCCGAGTCATATACAAATCACCATGAAGTACACGGATACAAGCATTTTATGAGACATGGTGACCCGTCTATACATCATGTGATGGATCCACCGAACTTCAACTCACTGAATCATCAATTATTAAGCAGCACAATGGAAGGAGTAACTGATTTGTCTGTAGCTTCATATGAAAACAATGTTAATAGCAATGGACCTCTTCTACACCAAATCTATGCTAAGAGTGCTGCAGCATCATCAGGATTCCCACATCAAAGATTCAATATTTGACTCACCCCACCACCATCCCATAAATGCTGCACAAATTTGGTCGTACATGGTATAACTTAACTTTCTTATGAATCATCATATATCCACCTCCTAGAAAACAACAAAAAAGAGAAGAAATGCATACACTAGTTAAGGTGATCATAGTTTTGTTTATGGATTGGAAGTATATATGCTAAGCAAGTAGTTGGTCTTTTCATTTTGTATGAGTTGTGAAGACCAAGGTTATGTTTTATGGATATATAGAATCGAACGATGGTGATAAAAAAAAATGTGTTATTCCATAGTTGGCTAACGTTTCTTGATCTTTAAGTAGTGAAACAATTTTGTGTATATCTGTTAACTACACCATCGAGTTGTTAGGTTCTCGTTCATAAAGCATCAACCAAGAAATGAATGTGAAGAAACCCGGCCATGTACTCAAGTAGGTTATTTAACATTTATGTGTTAAATGAATTAGTCTTGTTTC | |||||||||