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mature miRNA: TAACGAACATGAAACTGATTT
species: Artemisia annua
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|159765208|gb|EY090348.1|EY090348 CAZI19336.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI19 

TAACGAACATGAAACTGATTT
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ATTGCTTGTACTTTGACTAAA

EST sequence (targeted fragment marked with yellow):
CACAACCTTACAATGCAGTTCCCCCATCCGGTAACATCCTAACACCACCACCTTCTGGTGGTGGTGGACATGACCACACTGTTGTCATTGCAGTGTGTGCATCACTTGGTGGTGTGTTCTTCTTAGCATTCTTAGCTGCCGGTCTCTTCTGCTTAGCTAAGAGAAAGAAGAAACCAATCTTGGTACCAGCAGCCGCTCCATACGGTCACGGCGGCGGTGAAGGACATGGTCATAAAGGTGGTGGTGCGGGTGGTGCTCATGGTGGTGGACACTCAAGCTACGGCCAATAATAAGCATAAATGATCACGCACGTAAGAAATGCATTATACATCCAAAAGGTGGTGCATGTGTGACAGTTAAAATTTTTATGAATAATATTTTATTAAAATTTGTTTTGTAAATCAGTTTCATGTTCGTTAAGGTTAAGTTGTGTGGGATTTAAACATTTTAATTTTCATGTTTAGCAACTTGTGTTCTACTTATTATAAGTTGCAAGTTACATGGAAAAAGTTGTTTACTTTTTAAGTAGGGTTCGTGAAATTCAATATTTG