| mature miRNA: TCCAAAGGGATCGCATTGATC species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159520095|gb|EY047964.1|EY047964 CATB819.fwd CATB Artemisia annua, Tanzanian, from Sandeman Seeds,1.5-2kb Artemisia annua cDN TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): AGAATTATTGATACTGTACCATACGGATATTGTACATAAAAATAAGTATAATTTGATTTAAATTTAATTGATAGTATATAAATATATTTTAGTCTAATTCTACACTGCGCTTATTTCTTTTTCAATAATTCTAGACAATACGCTCAGTGGAAAGAAGTCGGGGACGGAGATAGAGGGCGGACGGTCTATCATGACCGGGCTAGAAGCATTGCCATTGGAAGCCAGTGCCGCTGCAGTTCTGGGCTTGACTCTTCTCGAGATTTTGTGGTGGGTTCAGTTTAAGAGCCAGGAGCCGAGGATCCAATCAGTCGTGGACGGCATTCCTCAGCATATGATCGAGGACCATCAAATGCCTGCCTAAATTTTTCAACTCAGAGGTCTCGACTTTTTTTTTTTCTGGAATAACCCTTCGTTCACAAGAAATAGAAAGTAATGCTGTTGACAAGATTATGCGCTTAGGTTTATAAAGAATGAGATAGTTGCAAGGGTATGAAATGTTTTGTGAGTTATAAAGAAAATGATAGTTCTTAATGAGCTGAGAACAATGTTATGCCTTTGGATTTTTCCTAAGTGTCCCGGTTTTGAAGCGATACATAAGAGTGAAAGTTGTAAAAAAAAAGTGTGTGCGTAGTGACATTACTACACGCGGGATTTCAGTTTAAATAAACAATGTACGATTTTGAGCTTAAATCTCATCTCCGGAATAATGAGACTTAATTAGAAATCAAAGGCATATTTTTTCTCAGTTCATC | |||||||||
gi|159738019|gb|EY107523.1|EY107523 CAZI5298.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI529 TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GGCAACCAAAGGACGAGTGGGCCGTTGCTTGGCATTAATTCAAGCAGCATCAGATGTACAAGAACAAGGAGCCGTTGATGACCGGGATACATTTTTACATGGTGTCAGAGACCTTTTGAGCATCCATTCGAATGCTCAAGGCGGTCTGTCGACATATGTCTCGGCACCAGGACTGGTGCAGCAGATATCCAGCCTTCAATCGGACCTCATGGCCCTGCAATCCGACTTAGATAATGCCCTTCCAGAAGATAGAAGTAGATGCATCAACGAGTTGTGCACTCTTATCCAAAGTCTGCAACAGCTACTGTTTGCATCTTCCACCACTGCACAACCAATTTTGACTCCGCGGACTTTAATGAAAGAGCTAGACGAGATGGAAAAGGTGAATGCCAAACTGTCTGCTGCAGTCGAAGAAGTGACACTGGAGCACTGCAAGAAGAACGAGATTGTAAAACACCACTCTCAAGAAATGGCACTTCAAAGACAGGTTTTTGTGGATTTCTTCTGCAATCCTGACCGTTTGAGAAATCAAGTGAGAGAACTAACCGCACGAGTCAGGGCTTTGCAAGCATCGTAATTCAATGTTGTATGTATTATCCCATCTTTTCATTTTTTTTCCTGCGCCCTTGTTTCCAAGTGTTGGCATATTTAGTTATATCAATTGTTGTGCTACCTCATTAAGTCGTATCATCTCTTCGTATCAATGCTATCTCTTTGGTTGTTAATCATCGCTTATTAATGT | |||||||||
gi|159709801|gb|EY095003.1|EY095003 CAZI22004.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI22 TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): GAACACAAAAAAAAAAACCAAACATTTTGCTCAAGAAACAATGTCAAAAGATGGTTTCTTCAACACACTCCCACAATCTTGGAATTCCATGTTTGGAATGGAACTTGACTCCCAAGTTAATGAAATGAACCTTTTTAATCATAATTGGGAGAATTCAATGGATCAGAGCGATCCCTTTGAATCCGCATTAAGTTCTATAGTCTCATCGCCAGTAAACAGTCATCCTGGGACAGGTGTACGTACACCTGTCCCAGGGTGCCATGCTGGCGGTGAGAGTGTAGTTTTGAAAGAACTTATTGGTAGATTAGGAAGTATATGTAATTCTGGCGAAATTTCGCCAGAATCATGTATACATGGAAATAATACTAATAATAATAGTACTAATACATCATGTTACACTACTCCGTTAAATTCGCCACCTAAGCTTAATCTTTCGATAAATCATAGGAATCATCATCAGTTGCCTATGATTCCTAGTGATCCTGCATTTGTTGAAAGAGCTGCGAGGTTTTCGTGTTTTGGTGCTAAGGAAAGTGAGTTTCAACATATGGTGGAATCTGGAAAGATGTCTAGAGTGTCGAGTAATCAGTCTTTTATTAAGACGGGTGGATCGGTTAGTAGATTGTCGATGAATTTGAATTCGGATAATAAGGAAGTGGATCATTCTGTTGAGGTATCATCTTTGTCTGAGCAGATTAATGGCTCGGAAACCGGAATTAAAGGTAGAAAGAGGAAGGTGATTTCCAAAGGGAAATCG | |||||||||
gi|159649677|gb|EY095725.1|EY095725 CAZI22370.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI22 TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): CCAAGAAGCTAGACATGCTTTCCATAGCTTTTGCAGGTGAGAGTGATTTAGGATTGCATCATGTTTTATCAGGGTGTGATAGCCTAAGGAAGCTGGAGATACGGGACTGTCCTTTCGGGGATAAAGCATTGTTAGCTAATGCTTCTAAATTGGAGACAATGCGATCCCTTTGGATGTCTTCGTGTGGTGTTAGTTTTGGAGCATGTAAGTTACTTGGTCGGATGATGCCTGGTCTTAACGTTGAAGTTATTGATGAGAGGGAAAACTTAAATTCAATTCCTGAAAACGTCCCGGTTGAAAAGCTTTACATTTACCGCACAGTTGCTGGACAAAGGTTTGACATGCCGGATTTTGTACGCACAATGGGCAAAGATGAGGTACGCGCTGCATACCACATGCTATAAATTTCATTTTCATAAAAGGTTCTCAGTTCTCAAGCGAAATCTCAAATCTATGAAAAAGGTCATATTGGCAATATTTGACAGTTGACATGGCTTTCGGTACCTAGGTTCCAATAAAGAATTGAAGCTCTTGTAGTGTTCCGATATGGCACATTGGGTCCAGTCAACAACGGTGTATGAGTTGTAGAATGTATTTGTATTTTTAGTCTCTCTAAATAAAGATTATTTGAATTATGCGACATCACTGTTTCTCATCTCTTTACTTGAATCGGAAAGACTTAATTATTGGTATTTGTTGCG | |||||||||
gi|159652249|gb|EY085882.1|EY085882 CAZI17102.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI17 TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): ATTGCTAAAACCAATCACGGCTATGCTCGTCTTCGTCACATTGCTAAGGTCATTGGCACCTGGGATGATCATGATTATGGTTTAAATGATGCTGGTAAAGAATTTAAGCATAAAGATATCAACCAAAAGCTTATGTTGGACTTCTTGGATGAACCCCCGAATAGTCCAAGGCGCAAGCAGGCTGGTGTTTATGAATCTTACACATTTGGTCCCGAGGGAAGGCGGATCAAGGTCATTCTTTTGGATACTCGATACCACAGAGACCCTCTGCGTAGTGATGGAACCATTTTGGGAACTGCACAATGGACATGGTTAGAAAGAGAGTTAAATAGCCAACCATCAGAAATAACCGTAATTGGTTCATCTATTCAGGTTATATCCAATCTTTCAGCATGTACTGGTCCTTTATTTTACATGGAAAGCTGGGGACGTTTTCCAAGCGAAAGAAAACGTCTTTTCAAATTGATATCCGATAGCAAGAGAGATGGCGTTTTCTTCATTAGTGGAGATGTACATTTTGGAGAAATAACACGCTTTGATTGTGCCACTGGATATCCCTTGTATGACATCACCGCAAGTGGTCTTACTCAGGCTGTTGAGAAGGTAATTCCTTCATTTTTACATTTCGTTGTAAGATTCTTGGCTTGGATTACACCTACTACCATGAGAGTTATCAACAACAACTGTAAACGTAAATCATGCACTTATGGACAACCTAATTTTGGAGTAAT | |||||||||
gi|159728261|gb|EY092511.1|EY092511 CAZI20766.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI20 TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): TCACAGACCGTGTATTCGAGTACATCGGGAAACATGCCAAAAAACTAGAAATGCTTTCTACAGCCTTTGCCGGTGATAGTGATTTAGGCCTACATCATGTGTTGTCGGGATGTGACAGCCTCAGGAAGCTTGAGATTCGAGATTGCCCGTTTGGAGACAAGGCTCTTTTGGCTAATGTTTCCAAGTTGGAGACAATGCGATCCCTTTGGATGTCTTCATGCGCAGTTAGTCTTGGAGCATGTAAGCTGCTAAGTCGGAAGATGCCTAGGCTCAATGTTGAAGTGATAGACGAGCAGGGAGACTTAGATTCCAGACCCGATAACTGTGCGGTTGAGAAACTTTACATATACCGCACAGTTGCTGGCCCAAGGCTCGACACGCCTAGCTTTATACAGACTATGGGTCAAAATACTGCGTACAGACTTCCTTGAGTCACATCCCACTTGTGGATTGAAGTCTCATGAGGAAAATTAGGAGTTAGGACGATCAGTCGCTGCGCTAAGGAACAAAAAGACATATATTGCGGGTCTTTTAGAGGTGTAGCTTCTAGTTTAAAGTTTTATTCAGACCATCTTAGATCACATTTCTATAATTAAGCTTTGTTTCGCTAGTCAGCTGTTCAATACATTATGAATTAGTCTGTATCCATTGATTTAAAAGTTCACAAGTGTATTTGATTTGATTGATGGTCAACTTGTGGGTGATAAGCAATTACTCTTAGACTGTTGAAGATTCTGGCAATGTCAAAATCCAAAGTTTTTATGC | |||||||||
gi|159766284|gb|EY105664.1|EY105664 CAZI4354.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI435 TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): CACAAAGTCCCGATCTTACAAAGATTGTTAGCCAGTGTCATAAGTTGCAGCGGCTATTGGTATTAGATTACATCGAGGATACGGGTCTCAATGCCCTTGCTATGTCTTGCAAGGACCTCAGAGAACTGCGTGTATTCCCTTCCGATCCCTTTGTTGCTGATGCAAACGTGCTTTTAACTGAAGAAGGCCTTGTTTCCGTTTCCGAGGGTTGCCCAAAACTTCATTCCGTTCTGTATTTCTGTCGACAAATGACAAATACCGCATTGATTTCCATTGCTAGAAACCGTCCTAACTTTACATGCTTCCGCTTATGCATTCTCGAACCTCGGGCTCCAGATCATCTCACATTCGAACCCCTCGATGCTGGTTTCGGAGCCATAGTAGAAAACTGCAAAGATCTTCGACGTCTTTCAATGTCGGGTCTCCTCACAGATCGTGTATTCGAATACATCGGAAAACATGCCAAGAAGCTAGACATGCTTTCCATAGCTTTTGCAGGTGAGAGTGATTTAGGATTGCATCATGTTTTATCAGGGTGTGATAGCCTAAGGAAGCTGGAGATACGGGACTGTCCTTTCGGGGATAAAGCGTTGTTAGCTAATGCTTCTAAATTGGAGACAATGCGATCCCTTTGGATGTCTTCGTGTGGTGTTAGTTTTGGAGCATGTAAGTTACTTGGTCGGATGATGCCTGGTCTTAACGTTGAAGTTATTGATGAGAGGGAAAACTTAAATTCAATTCCTGAAAACGTCCCGGTTGAAAAGCTTTACATTTACCGCACAGTTGCTGGACAAAGGTTTGACATGCCGGATTTTGTACGCAC | |||||||||
gi|159709483|gb|EY051561.1|EY051561 CATC3233.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): AAGTCTTTCTTGTTCTTCCTCTTCACATCTCTCTCTAGTTCTCTATCTCTTTCTCACACACAAACACGCTCACTCGATCAGAGAACGCTTCTATGTAGATCTCGACGGCAAGTAAAGGAGGCATCCAAAGGGATCGCATTGATCCCAAATCTCATATATCAATAGGTTTGTGTATGTGTATATATAACGAGTTGGGATCATGCTATCTCTTTGGATTTCTCCTTCGGTTGCTTCCAACTTTATAACCATCATAATATATATCCACCCAAGAAAAACCGTAGATTGAAGAGAATAGACGTACGTACGCTTTCTTCATTTTCTTAGAAAGATTGGATCTACAATCGTTAGCTCGAATGTGTGGCGTTTTCTCCAAGTACATGTAAGTATGGTTTCATGTATCTGCCGGATGTTTTAGGTAGCTTGTATTTGCCCTTTCAACTTTATGTATGGTCGAATTTATTCTTATAATCATCTTTTCTTTTTGGCTTATATTGAATGTCAAGAACAAATACGCATACATTGAGTTTTGTTCATGTTCCCTAAGATTTTCGATATCATATATGAGAATCTGGTTGGGCTTTCTTAC | |||||||||
gi|159729213|gb|EY072041.1|EY072041 CAZI10014.rev CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI10 TCCAAAGGGATCGCATTGATC EST sequence (targeted fragment marked with yellow): CTCCTCACAGATCGTGTATTCGAATACATCGGAAAACATGCCAAGAAGCTAGACATGCTTTCCATAGCTTTTGCAGGTGAGAGTGATTTAGGATTGCATCATGTTTTATCAGGGTGTGATAGCCTAAGGAAGCTGGAGATACGGGACTGTCCTTTCGGGGATAAAGCGTTGTTAGCTAATGCTTCTAAATTGGAGACAATGCGATCCCTTTGGATGTCTTCGTGTGTGTTAGTTTTGGAGCATGTAAGTTACTTGGTCGGATGATGCCTGGTCTTAACGTTGAAGTTATTGATGAGAGGGAAAACTTAAATTCAATTCCTGAAAACGTCCCGGTTGAAAAGCTTTACATTTACCGCACAGTTGCTGGACAAAGGTTTGACATGCCGGATTTTGTACGCCCAATGGGCAAAGATGAGGTACGCGCTGCATACCCCATGCTATAAATTTCATTTTCATAAAAGGTTCTCAGTTCTCAAGCGAAATCTCAAATCTATAAAAAAGGTCATATTGGCAATATTTGACAGTTGACATGGCTTTCGGTACCTAGGTTCCAATAAAGAATTGAAGCTCTTGTAGTGTTCCGATATGGCACATTGGGTCCAGTCAACAACGGTGTATGAGTTGTAGAATGTATTTGTATTTTTAGTCTCTCTAAATAAAGATTCTTTGAATTATGCGACATCACTGTTTCTC | |||||||||