| mature miRNA: TCTCTCCCTCAAGGCTTCAGA species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159640626|gb|EY038822.1|EY038822 CAIY4041.fwd CAIY Artemisia annua leaf Artemisia annua cDNA clone CAIY4041 5', mRNA sequence TCTCTCCCTCAAGGCTTCAGA EST sequence (targeted fragment marked with yellow): GTTCTAGATCGCGAGCGGCCTTATATACCACAACGGTGGCTGCTAGGATTCTTGCGAATTTGCTTGTATTGGGTGGTGGAATCTTGGCCAGGGGAATGGTTCAAGCTTATCGCCAAGCCTTGCAGAATGCCTCAAAAACAGGTGTTGCGCAAGAAACTATGCAAAATGCTGTTCGTAGAGGAAGCAAAGCTATGACTGAACTAGAGGCTAGACAAATTCTTGGTGTGACCGAAAAGGCATCATGGGAGGAAATTGCACAGAAATATGATAAATTATTCGAGCGCAACGCTACGAACGGGAGTTTCTATCTGCAGTCGAAGGTTCACCGGGCCAAGGAATGTTTGGAGACAGTTTATCAACCAAAAGATATGCCAGGTGGTCCAATGGGCTGACTTAAACTTTCTATTTTGACCTAAAGACTTTTGGAAAAGACTATTTGGCAACATATGTATATTATTAGTCTGGTATTTTGAGGGAGAGAAATTTTTGTATTCTTGAATCTGTTTCTGTAAGCCATTATTGGCTATCTTTGTGTCACATGTTGAATGGACTACTGTAATACGAGTACTAATAAGTTCACAATCTTAAGCCGTTATTGCTTATGTTCATTAAGAACATAAACCGATGTAAGGCTTCAGATGTTACCTGANAAAAAAAAAAAAAAAAAAAAG | |||||||||
gi|159687713|gb|EY093156.1|EY093156 CAZI21082.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI21 TCTCTCCCTCAAGGCTTCAGA EST sequence (targeted fragment marked with yellow): CGATGTTGAAGTCATGAATGCAGACTCAAGATTGGTTCTTGGTGACCAAGATTCCTTGCCTAGTCCCAGTAACGTTGCCCGAGCGCTCTCTTCTTTGTACAAAGAGATAACTGATACTGTCCGCAAAGAGTCAGCTACCATCATGGCTGTATTTCCTTCTCCAAATGATGTCATGTCAATTTTGGTACAGCGAGTAATGGAAGACCGAGTTCCTAAACTTCTAGAGAAGCTATTGGTGAAACCATCTTTAGTAAACCCACCTCCGATGGCAGAAGGTGGTCTGTTGCTATACCTCAGAATGTTAGCAGTGGGATATGACAAGACACAAGAACTTGCCAAAGATCTACGCAGCGTGGGTTGTGGTGACTTGGATATTGAAGGCCTAACAGAATCCCTATTCCTTGATCACAAAGATATGTACATCGAATATGAGCAAGCTTCTTTAAGACAACTCTACAAAGCTAAGATGGACGAACTGCTTTCTGAGAGCCAGCTATCTGGAGAATCAACAGGTTCGATTGGACGTTCAAAAGGAGCTTCAATATCATCTTCCCACCAGCAGATATCTGTTACAGTGGTCACAGAGTTTGTGCGTTGGAATGAAGAAGCAATTACAAGATGCACTTTGTTTTCACCTCAGCCTGCCACTCTTGCAGCCAACGTCAAAACTGTCTTCACTTGCCTTCTAGACCAAGTCAGTCAATATACAACAGAAGGGCTTGAAAGAGCTAGAGATGGTCTCACGGAAGCAGCAGCTTTGAGGGAGAGATTTGTGTTAGGCACTAGTGTTA | |||||||||
gi|159763237|gb|EY114711.1|EY114711 CAZI8999.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI899 TCTCTCCCTCAAGGCTTCAGA EST sequence (targeted fragment marked with yellow): GATCAATATACAACAGAAGGGCTTGAAAGAGCTAGAGATGGTCTCACGGAAGCAGCAGCTTTGAGGGAGAGATTTGTGTTAGGCACTAGTGTTAGTCGAAGAGTGGCTGCTGCTGCCGCTTCCGCAGCAGAAGCTGCTGCTGCAGCTGGTGAAAGCAGTTTTAGATCTTTCATGGTTGCTGTACAACGTTGTGGAAGCAGTGTTGCTATTGTTCAGCAATACTTTGCCAACTCCATTTCAAGGCTTTTGTTACCAGTGGATGGTGCACATGCTGCTTCATGTGAAGAAATGGCAACAGCCATGTCCAGTGCAGAAGGTGCTGCCTATAAAGGACTTCAACAATGCATTGAGACAGTTATGGCCGAGGTGGAACGATTGCTTTCAGCTGAGCAAAAAGCTACCGACTATAAGTCACCAGATGATGGCATTGTTCCTGATCATCGCCCTACAAACGCATGCATAAGAGTTGTGGCATATCTCTCCCGTGTGCTTGAGGCAGCATTCACCGCTCTTGAAGGTCTTAACAAGCAAGCTTTTCTAACCGAATTGGGGAACCGCTTGCACAAAGGCCTAAGCAATCACTGGCAGAAGTACACTTTTAATCCAAGTGGAGGATTAAGGTTGAAACGTGACATCACTGAATATGGGGATTTTGTGCGAAGCTTCAATGCTCCTACAGTTGACGAGAAATTTGAATCATTAAGCATCATGGCCAATGTATTTATTGTTGCCCCTGANAGCTTGTCGAGTCTTTTTGA | |||||||||
gi|159599792|gb|EY038582.1|EY038582 CAIY3923.fwd CAIY Artemisia annua leaf Artemisia annua cDNA clone CAIY3923 5', mRNA sequence TCTCTCCCTCAAGGCTTCAGA EST sequence (targeted fragment marked with yellow): GGACAATCCATCGATTTCTTTGGGGCATTGAGGGCGAGAGTGTATGATGATGAAGTGAGGAAGTGGATTGGTGAAACTGGGGTTGAGGGCATTGGGAAGAGACTTGTGAACTCAAGGGATGGCCCACCCACATTCGAACAACCCAAGATTACCATCGATAAGCTCTTGGAGTACGGAAACATGCTGGTTCAAGAACAAGACAATGTCAAGAGAGTCCAGTTGGCCGAGACCTATTTGGACTCAGCCGCACTTGGGGATGCTAACAGAGACTCCATTAGCCGAGGAGAGTTCTATGGGAAAGCAGCCCAACAGGTTCAGGTTCCTATTCCAGAAGGGTGCACTGACCCTGGTGCGGAGAACTTTGACCCAACAGCTAGGAGTGATGATGGAAGCTGCACTTACACTTTCTAAATTTAGAAACTTTAAGGGAATTACAAGAAGTATTTGTCTAAGGATGTGAGGATGTTAAACAGTTCTATTTATATGGATTGTTGCGACCTTTGTGATTTTGTTTGTTGATTATTATCAAATAAGTTATTTTTGGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||