| mature miRNA: AAGATACATCAGTATCTAGTG species: Avena barbata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|240317612|gb|GR328764.1|GR328764 CCOT1280.b1 CCOT Avena barbata leaf, grown under high rainfall (L) Avena barbata cDNA clone AAGATACATCAGTATCTAGTG EST sequence (targeted fragment marked with yellow): GATTAAGAAGAATGAAAGCATAAATGGTCATTGCAAAAATGTATCCTTCGTATGTGCTGATGTTACATCTCCGGATCTGGTGATTGAAGATAACTCCATCGACCTTATATTTTCAAACTGGTTGCTGATGTATCTTTCAGACCAGGAGGTTGAGAAGCTAGTACGAAGAATGGTAAAATGGTTAAAAGTTGGTGGGCACATCTTCTTTAGGGAATCATGTTTCCATCAATCTGGAGACTCAAAAAGGAAAGTGAATCCGACACATTATCGTGAACCAAAGTTTTATACTAAGGTGTTTAAAGAGGGCTTTGCAATTGAACAAAGTGGGGGATCCTCTGAACTTTCTCTACTAACTTGCAAGTGTGTTGGAGCTTATGTGAAAAACAAGAAGAATCAAAACCAAATATGTTGGCTATGGGAAAAAGTCAATTCAACAGAAGATCGTGGCTTTCAAAGATTTTTGGATAATGTGCAGTACAAAACCAGTGGAATATTACGCTATGAGCGTGTTTTTGGGGAAGGTTTTGTGAGCACTGGTGGAATTGAGACTACAAAAGAATTCGTGGACTTGCTGGATCTTAAACCTGGGCAGAAGGTGCTTGATGTTGGATGCGGAATAGGGGGTGGTGATTTTTACATGGCTGAAAACTATGATGTTCATGTTGTTGGTATTGATCTCTCCATAAACATGGTTTCATTTGCACTCGAGAATGCTATTGGGCGCAAGTGCGCAGTTGAGTTTGAAGTTGCTGATTGCACACAAAGACATACCCAGACATACGTTCGACGTTGTCTA | |||||||||
gi|240345511|gb|GR347491.1|GR347491 CCOX3220.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A AAGATACATCAGTATCTAGTG EST sequence (targeted fragment marked with yellow): ACCTTGGAATTAACGATAACCAGTTGGTTGAGCTGGTCAGCAAAATCTTCATTGTAGCTGTCTCTGCTGTGGCTCTTCTTGGTTTTGCAGTATATGGTGGAAGGCTGTTTGTCTTGCTGAGACGTTTCCCCATTGAATCAAAGGGGAGGAAAAAGAAGCTTTATGAGGTCGGGACTGTGACGACAATCTGCTGCACCTGTTTCCTAATAAGATGCATTGTGGTGGCAGTATCTGCATTCGATGCTGATGTTTCTTTGGAGGTTTTGGATCATCCAATCCTAGACTTCTTCTATTATTTGCTGACAGAGATACTGCCTTCTGCCCTGGTCCTTTTCATCCTCCGGAAGCTCCCACCTAAGCGGGTGTCGCCGCAGTACCATCCAATTAACTAGAGGTCGTGTGCTTCTGTATGCTACTATGCTAAGAATAATGGATAAACTTGAAATGTACAAAGAAACTCTACACGTCTGGTGCG | |||||||||
gi|240347282|gb|GR347985.1|GR347985 CCOX3497.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A AAGATACATCAGTATCTAGTG EST sequence (targeted fragment marked with yellow): GTCATAAAATCAAAAGATCAAGTGACGATCAAAACTTTTTATGAATACGTTGAACCCTATGTCAGGGATTATACAGAAGATGATGTCAATTTCTGAAAGAAAGGGAAGATGACCTAACATTGTATATTATTCCGAAACTGGGGAGAAACTATGCTGAGGTTTGGGCTGAAGAAGAACGTAACCTCTTCCCACAAACTCCCGAGGAACTCGAGGCAAGACACGTTGACACGGTGGATGGACAACGCCGGACACAGGAATTGGATATTGATGGATCTTGTGGACCTTTGACCGAGAGGTTACTCGCCGCTTTCTTGGAGAAAGAAGAGCCCGTGACCGTTATTGATTCTCCAGAGGAAGTCCAAATAAATGGAAATCATAACGGTGCTGGTGTGCATTCACCTGATGACACGCAAATTAATGGGTATCACCAAGAAACGGTCGATGAACAAAGGGAGATATTCAATATGGACGAAAGATTGAAGAGAGAGTTAAAAGCCTTGGGTATAATGGATGAGCAAGATGTTCAGTGGGATGAAAGAGAAGATGATGAAATAAGTATTCGACTGCGAGAACTCCAGGAGAAATTACGACAGCAAGTGAAAATCAATAATTATCGTAAGGAAGTCCTGTTGAAGAAAGTTAAAGATAGATTGGCATACATCGCATACAATAACTACCTGGACGAAACTGACGCTCAAATTGAAGAATTTTATTCGGCCCGCTTCCCCGAAAAAGATAAAAGCGCAAAGACTTCC | |||||||||
gi|240353886|gb|GR351531.1|GR351531 CCOX5333.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A AAGATACATCAGTATCTAGTG EST sequence (targeted fragment marked with yellow): ATGCAGGAAACAAGGGCCACTCCCGTTGTTATGAAATGTCCCCAGAACAGTTCACTAAGCTTGTAGTAGAGAAGTGGGGAGAAGGCTGCAGGGAACACCGGGGTATTCATCACACGAAAAAGACATCCTACAAGTGACGAAATGTATTGAAATAGCAGTAAAATGTGTGGAGAAGGACCGATATAAAAGGCCCCTCATAAAGGATATTGCCCTTGAACTTGAGGAACTAGAAGCTAAGATCAAAGAAATGTCACTATATTCTGATGTGTCTGGTCAGACAAGTTGTACCTCCAGCATCCTCGCGGTCGATCCGGCGATAGAGCTGCGCTTCCTATTCGAACCAAGGAAGGACATATCGACGTGCCTGCAGCTAACCAACCAGACGGATGGCCCCGTAGCGTTTCGCGTCAAAACCAACCAAGCCAAGTACTGCGCACAACCAACCAAAGGGATAATGCCGCCATGTTCGAAGCGCTATGTCTCTGTGACCCTGCGAGCACGGGATGATGAGGCGCCGCCGAGCATGCGGTGCGACGACATGTTCCTTGTGCAGAGCGCTCGTGTCAGCGACGGGGTTACCGAAGACGAAGCCATGGCAGGACCGGCGGCGGGTATGGTGAGACTGCCTATTGTTTTTATTGGGTCTGACCAAGTTCGAGGCTGATAATAATCAGCAAGGGAGCAGAGAGCCAAGGTATAAATTACATGGCCCAGGTTGACATATTCCAGCCTGTGCATCATGCTAGACATGTAGTGACAAGCAACAGTTTATTGGATTAATAAATATGGTCTTTGCTGAAG | |||||||||
gi|240349338|gb|GR354269.1|GR354269 CCOX6735.b1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A AAGATACATCAGTATCTAGTG EST sequence (targeted fragment marked with yellow): AATCGGTCCTCTGTTCTTTCTCCCTCTCACAACCTCGACGTGATCCCGTCGTGGATGCAGCCGCGTGGGAGATCATTCAACCGCCGCTCCCGCAGCTTCTCCCGCGCCCGCCTCGCCGTCGAGGGGTCCTAATCTCACCGACCTCCGGTGACGAATCGTCCCCTCTAAAATTACTCGGAACATCTCGTCGGTAACGAGCACGCGAGCGAAGATGGACGCCGCCGCCGCCGGAATCTTTGTCAATGGGGGTCTGCAGAAGCTGGAGGAGGAGAGGAACGCGCAGAAGAGGTACTGGGAGGAGCACTCCAAGGACCTCACCGTCGAGGCCATGATGCTCGACTCGCGCGCCGCTGATCTCGACAAGGAGGAGCGCCCAGAGATACTGTCTTTACTTCCTTCATATGAAGGAAAATCAGTGCTTGAGCTTGGTGCTGGAATTGGCCGCTTTACTGGAGAATTGGCTAAGACAGCCGGGCATGTTCTCGCTATGGATTTCATTGAAAGTGTGATTAAGAAGAATGAAAGCATAAATGGTCATTGCAAAAATGTATCCTTCGTATGTGCTGATGTTACATCTCCGGATCTGGTGATTGAAGATAACTCCATCGACCTTATATTTTCAAACTGGTTGCTGATGTATCTTTCAGACCACGAGGTTGAGAAGCTAGTACGAAGAATGGTAAAATGGTTAAAAGTTGGTGGGCACATCTTCTTTAGGGAATCATGTTTCCATCAATCTGGAGACTCAAAAAGGAAAGTGAATCCGACACATTATCG | |||||||||