| mature miRNA: ATACTCCCTCTGTCCCAAATA species: Avena barbata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|240351580|gb|GR352569.1|GR352569 CCOX5870.b1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A ATACTCCCTCTGTCCCAAATA EST sequence (targeted fragment marked with yellow): GCGCAAGACCTTCTTCGGAAGATTCTTGAACCGGATCCTAGAAAGAGGCTCAACATGGAACAAATCAAAACACATGAATGGTTTCAAAAGGGCTATATTCCAGTTGCTCCATATGTTGACAATGATGAAGATGTACAGCTTGCTGTGATTTTTCCTGTCAAAGAGATCAGTGAAGCACCTGGGGACAAGAGTATTTATCAAATGAACGCTTTTCAGCTGATTGGAATGGCATCTTCCCTCGATCTTTCAGGTTTATTTGAGGAAGAGGAAGTATCCCAAAGGAAAATCAGGTTCACATCAACACATCCACCTAAGGACTTGCTTGACAAGATGGAAAGCTCTGCAGCGGTGTCAGGGTTCCAAGTTCAGAGGTTGCAGAGGAAGGTGAACATAAGCTTGTCTCGTCTTCACATTTTGGAGCTTTCTGATTAGCCTACTATATGGCAAAAAGTTTTGAGGGAGCTTACAATGATGTGTCGTGTGATGTTTCAGCTCAAAATAACAAGCAATTGCAACAGATTGAACAACCCCAAGCCATTCTTGGTCTGCGCTGAGGTGTTTGAGCTTGGCCCCTCCCTGCATGTCGTGGAACTTAAGAAGTCCCATGGTGACAGTGCACTGTACAGACAGCTCTGCCATAGAATCTCAAGTGACTTGGGGATTAGCAACATCTTCAAGACGGAGCCGCTCCTCGGAGACGACCTCCTGAGCTTCGACAGTAGAGCAGCGACGCCTCTGGTTGCCTTGTGATGAGTGTTGTCCCACACTAACATGATGGGTTTAGCAGTCTGGGTTTAGACCCTAGGATTATAGCTCGTCAG | |||||||||
gi|240290853|gb|GR317186.1|GR317186 CCOO411.b1 CCOO Avena barbata leaf, grown under ambient rainfall (H) Avena barbata cDNA clon ATACTCCCTCTGTCCCAAATA EST sequence (targeted fragment marked with yellow): CAATTTTAATAAATCTAAAACATTTATTTTGGGACAGAGGGAGTACAATTTTTTCACAAACCTAAAACATCTTATATTTTAAAACGAAGAGAGCAGTCTGGAATGAGAAATTAGCATCATCATAACAACAGATGCTCAGTGCCTGAGGCAGGCGCTGACAGCCTAGCTGGCGTTCTCTTCTGGCAAATTATGTTTTTTCTCGTTACTAGCTTTAACAGTTTTGAACTATTGTAGCGTGTAATTGTGGCTGTAATATCGTAGCACACGCCTTGCCTTCTCTGGGTTCTAGCTTATCCAACGGCGACTCCATGTTCTATCATGAGGTACCTAACTGTGTATCCCATGTGGTTGGTAGCAATTTTTGCTGCACCGATATATATATTAATAAGCCCACTGTTTCTGTAAAAAAAAAGAATAATTGTGTTCAGTGATATAGGAATGTGAGACTGTACTCCATCCGTCCTAAAATAAGTGACTTATGTTTTTCTAGATTCACACGTATCTATACACTAAAACACGTCTATATACATTCAAATCTAGACAAATGCAAGTTACTTATTTCCGGACGGAGGGAGTATATGTTTTGATCATAAACAAGATACAACAAGAAGCATGTATGATGAAAATTTCTGCAGACAAACAACCATGCAAGTCAGAACCAGCCAATGTTAAACACATTAGACTGTTGGATGCATCCACTTATGTTTTCATATCTACTGTACCAGAGACACAATTTCACAATGTCTATAGTTTGTTTTCAACAAAAGCTCTAAGGGGCTACGTTTCAGA | |||||||||
gi|240368543|gb|GR364479.1|GR364479 CCOY6108.b1 CCOY Avena barbata root, pooled from different levels of rain and nitrogen (L) A ATACTCCCTCTGTCCCAAATA EST sequence (targeted fragment marked with yellow): TATCTGGTCTTGTGGAGTAATTCTTTACATAATGCTCGTAGGATATCTTCCATTTGATGACCGAAACATGGTCGTTCTTTATCAGAAGATTTTCAAGGGTGACACTCAGATCCCAGAGTGGCTTTCACCTGGCGCGCAAGACCTTCTTCGGAAGATTCTTGAACCGGATCCTAGAAAGAGGGTCAATATGGAACAAATCAAAACACATGAATGGTTTCAAAAGGGCTATATTCCAGTTGCTCCATATGTTGACAATGATGAAGATGTACAGCTTGGTGTGATTTTTCCTGTCAAAGAGATGAGTGAAGCACCTGGGGACAAGAGTATTTACCAGATGAATGCTTTTCAGCTGATTGGAATGTCATCTTCCCTTGATCTTTCAGGTTTATTTGAGGAAGAGGAAGTATCCCAAAGGAAGATCAGGTTCACATCAACACATCCACCTAAGGATTTGCTTGACAAGATGGAAAGCTCTGCGACCGTGTCAGGGTTCCAAGTTCAGAGGTTGCGTAGCAAGCTCAAGATAACAAACAATCGCAACAGATTGAACAACCCTGCACCCTTCTTGGTCTGTGTCGAGGTGTTTGAGCTTGGCCCCTCTCTGTATGTTGTGGAGCTTAAGAAGTCCCATGGTGACACAGTACTGTACAGACAGCTCTGCGATAGGATCTCGAATGACCTGGGGATTCGCAACATCTTCAGGACGGAGCCGCTCCTCGGAGAAGACCTCCCGAGCTTCGACAGTAGAGCCGCGACGCCTCTGGTCGCCTTGTGACGAGTGTTGTCCCACACTGACATGATGGTTTAGGAC | |||||||||
gi|240347344|gb|GR348047.1|GR348047 CCOX3531.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A ATACTCCCTCTGTCCCAAATA EST sequence (targeted fragment marked with yellow): TCGCTGCTTGATTTTTGAGGTGCAAAGAAGTGCTAGGTCAGAGGCTAGAAAGGAGGAAGCACGCAACAGGAACTTGAGGAATTGAAACAAAGGGAAGAGAGTTTAGCTAACGATTTAGAAGATCTTAAACGGAAGCTGGATGAACTTGAGCGCCTCGCTAAAGGACGAGGCCTTTCTGGAATATTGAACTTTAAAGGTGTCAGTGGATCGGATGGTGGCAAGGCAGCAACACCTGCTTGATTTATCTATTCAAGTTTGGTCAGGAAAAACAGGATGTTGTGTTGTCACGAGTCTATGAGCATATCACCTTGACATTGGCTAACTGGTTTCCTAATTCTTCTGTCACACTTCTACTCCCTTCGTTCCAAAAATAAGTGACTTGGATTTGTGTAGATTCACATGTATCTACACACTAAAATGTGTCTGTGAATCTAGACAAATCAAAGTCACTTATTTGGGACAGAGGGAGTATGATTCTTTCGAATGTGACATCCATTCTTTTGGTGAATGTATCAATTTTTTTTTATGGTAGATCCAGTAGACATCATGAAATAATACAGTGTAACTGTGTCACGAAAAGGCCTGGTTACTTCTCGGTACTTGAAAAGTAGATGTAAAGATGGATGTATTCTTACTTTGGGCCTTTGGCTCGCTAGCACATCAGGTAGCCAAGTCTAAATGCTTCATTATATGTTGTGGACTATGATCTGAAGTAGTACTCCCTCCGATCCTAGACAAATCTGTGTCAATTAATTTGGATTGGAGGAAGTAATAATTAAATGATTTCCTTTATTCT | |||||||||
gi|240325862|gb|GR336649.1|GR336649 CCOU3029.b1 CCOU Avena barbata leaf, pooled from different levels of rain and nitrogen (H) A ATACTCCCTCTGTCCCAAATA EST sequence (targeted fragment marked with yellow): GGTTTAAGAACAACTTGTAGGATAATCTTAATTCTTATGTTATTAGTAATGTGTCTTTTCTGTTCAGACAGATCTGTTGAGATATTTACTTTTGACTATCCAGATTATATAAACCTGAATGCATTGCTTCTTTTGCACGTTCTTTTAGGAGCAGTTACATGGTTACATTTCTTATGGCACACTAGAACACTAAAAGTAATTTACCACAAAAGAGGTAATTTACTTCTAAAAATAACAAACCTACCTTACTTGATAGCTAGATTTTATAAAGGAGTTGTTCTTATAAAAGAAAATACCCCCTCCGTCTCAAATAGTTGTCTTAGATTTGTCTAGATACAGATAAGACAACTAATTTGAGATAGAGGGAGTAATTATTTGTGCTGCTTGATGTTGTATCAGGAGAAATTAGGGTCAACTACATGGAAAAAAGGAGGACCACTTGGCAAAGAGGGGAGCCAAAAATTCGGCATAGCCCATATGTAGATTGTCAACCGGTGAACAAAGGGTGTGGGTCGTGTGGCACATTGAGTTAGAGAAATTGGCAAGAGTTGCTTAATTGGTACAAAAAGAGAGTATAGTTTTTGGAATGGACTAAGGCTAGAGAGGTTTTCATCGTGTGTGCTTGTGTGGTAGGGAGAAAAAAAAATGCATGACAAATATAACCAAGCATACCGTATACATCAGTGTTTACCGCAAAATCAAATATTCCCTCCATTCCAAATAATTGTGCTGGCTTGATGGTGT | |||||||||
gi|240372287|gb|GR357319.1|GR357319 CCOY1819.b1 CCOY Avena barbata root, pooled from different levels of rain and nitrogen (L) A ATACTCCCTCTGTCCCAAATA EST sequence (targeted fragment marked with yellow): CGCCCAACATGGTAACGATCGTTCTCGCGTTCCAACCCGCCGGGTTTCCTCTCCTCTCCGGGATCTGACACCCTTCCATCCGATTTTGGCTGGCCCCTTTGCAGATCCGGTTCATCTTGCTGCAAAACCGGCAGGGAAAGACGCGGCTGGCCAAGTACTACGTCCCGCTCGAGGACTCGGAGAAGCACAAGGTCGAGTACGAGGTGCATCGGCTGGTTGTCAACAGGGACCCCAAGTTCACCAACTTCGTTGAGGTGATTGAATTCTTTAATTGGAATTAAGTACGAGGGATTTGTACTATACGCGTGGGCGAAATTAGCAAAGGGATCGTTGCTTCTTGCTTGGTTTTAGAATTGAACAGGGCTCCGTGTTCTTGATCTGGAGACTGATCATAGGGTAGAAATAGAATGAGTTCAAACAACGTACTCCCTCCGTCTCAAAATTGATGTCGCAGATTTGTCAAAATTTGGATGAATCTATATACTATTTGAGCCAGAGGGAGTAGTTGTGGATACTGTTGTTCTTGGTTGACTTCTACATGGAATCGTAGTTGTGAAAGGTTGTGCCCTTTGTCCTGGCCGTCCAGTGGTTAGAGGTAATTATGCAAACATCTACATGACTGTTATTGGAAGTTGATCTGTG | |||||||||