miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CGGTGAACTCCTTTTCTTCGT
species: Avena barbata
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|240337418|gb|GR339350.1|GR339350 CCOW1576.b1 CCOW Avena barbata leaf, pooled from different levels of rain and nitrogen (L) A 

CGGTGAACTCCTTTTCTTCGT
|||||| |||||..||.| ||
GCCACTCGAGGAGGAGGAACA

EST sequence (targeted fragment marked with yellow):
CACCAATCTACCCACCTAGCAAAGCTAGCTCACAGTCACCTCCGCAATGGCCACCGCACTCATGAGCAGCCTCCGCGCGCCCTTCTCCCTCTGCCCCGCCGCCCCCTCGGCGCCTGTCGCCACCCGCGTCGCGCTGCCGCTGTCATCGTCGACGACGGCCGCCAGGGGCATGAGACCCCGTGCGCAGGCGACGTACAAGGTGAAGCTGATCACGCCGGAGGGGGAGGTGGACCTCGAGGTCCCCGACGACGTCTACATCCTCGACCACGCCGAGGAGGAAGGCATCGACCTGCCATACTCCTGCCGCGCCGGCTCCTGCTCCTCCTGCGCCGGCAAGGTGGTCTCCGGCACGGTGGACCAGTCCGACCAGAGCTTCCTCGACGACGACCAGGTGGAGGGCGGGTGGGTGCTCACCTGCGCCGCGTACCCCCAGTCCGACCTAGTCATCGAGACCCACAAGGAGGAGGAGCTCACCGCCTAAATTATTAACTTATTATCCATTTCGATCGATTTCCGGCGCCTGCGCGTGCTTACATGAACCGTGTCAGGAATTCAGAGTACCGAGGAGTAATTAGTACGTACAATTGTTAGTGCTTGTTTTGGACTTGTGGTCGGGTTTTGAATGCTTAATTTCGAGTATTGTTTGTTTTCTCAAGCCAAGTAGCAATAAAAAGAGATGAGGTTGTACTCCCGGTA


gi|240331272|gb|GR341844.1|GR341844 CCOW3052.g1 CCOW Avena barbata leaf, pooled from different levels of rain and nitrogen (L) A 

CGGTGAACTCCTTTTCTTCGT
|||||| |||||..||.| ||
GCCACTCGAGGAGGAGGAACA

EST sequence (targeted fragment marked with yellow):
TCTGCCCACTAGCAAAGCTAGCTCACAGCTCCGCCGCAATGGCCACCGCACTCATGAGCAGCCTCCGCGCGCCTTCTCCCTTTGCCCCGCCGCCCCCTCGGCGCCTGCCGCCACCCGCGTCGCGCTGCCGCTGTCATCGTCGACGACGGCCGCCAGGGGCATGAGGCTCCGTGCGCAGGCGACGTACAAGGTGAAGCTGATCACGCCGGAGGGGGAGGTGGACCTCGAGGTCCCCGACGACGTCTACATCCTCGACCACGCCGAGGAGGAAGGCATCGACCTGCCCTACTCCTGCCGCGCCGGCTCCTGCTCCTCCTGCGCCGGCAAGGTGGTCTCCGGCACGGTGGACCAGTCCGACCAGAGCTTCCTCGACGACGACCAGGTGGAGGGCGGGTGGGTGCTCACCTGCGCCGCGTACCCCCAGTCCGACCTAGTCATCGAGACCCACAAGGAGGAGGAGCTCACCGCCTAAATTTAGCTCATTATTATCCATTTCTATCGATTTCCGGCGCCTGCGCGTGCTTGCATGAACCGTGTCAGGAATTCAGAGTACTGAGGAGTAATTAGTACGTACAATTGTTAGTGCTTGTTGTGGATTTCTGGTCGGGTTTTGAATGCTTAATTTCGAGTATTGTTTGTTTTCTCAAGCCAAGTAGCAATAAGAAGAGATGAGGTTGTACTACTCTATTATCCATGCATGTTAGATACTTGTGCTTTGTTTTGGTTACCAAATGTCC


gi|240337448|gb|GR339380.1|GR339380 CCOW1597.g1 CCOW Avena barbata leaf, pooled from different levels of rain and nitrogen (L) A 

CGGTGAACTCCTTTTCTTCGT
|||||| |||||..||.| ||
GCCACTCGAGGAGGAGGAACA

EST sequence (targeted fragment marked with yellow):
CCAAGCAGGTGCGGGGGAGCCAGCCTCCGCGCGCAGGCGACGTACAAGGTGAAGCTGATCACCCCCGAGGGCGAGGTGGAACTGGAGGTCCCCGACGACGTCTACATCCTCGACCAGGCCGAGGAGGAAGGCATCGACCTGCCGTACTCCTGCAGGGCCGGGTCATGCTCATCGTGCGCCGGCAAGCTGGTGTCCGGGTCGCTGGACCAGTCCGACCAGAGCTTCCTCGACGACGAGCAGATGGAGGCGGGGTGGGTGCTCACCTGCCACGCCTACCCCACGTCCGACCTCGTCATCGAGACCCACAAGGAGGAGGAGCTCACCGCATAAATTGACTATATATTATCTCTTATCATGTCATGCATACACCTGCGATTTGTTTCTGCTTGAATGAATTGCTCCATGCATGCATGATTTGCTCAAGTAATAATATCGTCAAGTCGAAGTACCTTTTTTTGTACCGTAAGATATACTGTCAAATGCTACTGTAGTATATTGTACGCATCTCAACGTGATTGTAAGAGACCCATGAATGTTGGTCTCTTGAAATAGTAATGCATATGCTCACATTGATGAATATCTGTGATATTGATAAGAGCAAGGACAATAACGTAGCCCGTTGCTGGCTATATGCACATGCCAGCTCACCTAAGGTCTTCATATATATATACTCATACAATAAACTGGCTACTAAGTTGGCTCTATTTAATATTTAAGTACT


gi|240315040|gb|GR332540.1|GR332540 CCOT592.g1 CCOT Avena barbata leaf, grown under high rainfall (L) Avena barbata cDNA clone C 

CGGTGAACTCCTTTTCTTCGT
|||||| |||||..||.| ||
GCCACTCGAGGAGGAGGAACA

EST sequence (targeted fragment marked with yellow):
GCTGATCACCCCCGAGGGCGAGGTGGAACTGGAGGTCCCCGACGACGTCTACATCCTCGACCAGGCCGAGGAGGAAGGCATCGACCTCCCGTACTCCTGCAGGGCCGGGTCATGCTCATCGTGCGCCGGCAAGCTGGTGTCCGGGTCGCTGGACCAGTCCGACCAGAGCTTCCTCGACGACGAGCAGATGGAGGCGGGGTGGGTGCTCACCTGCCACGCCTACCCCACGTCCGACCTCGTCATCGAGACCCACAAGGAGGAGGAGCTCACCGCATAAATTGACTATATATTATTTCTTATCATGTCATGCATACACCTGCGATTTGTTTCTGCTTGAATGAATTGCTCCATGCATGCATGATTTGCTCAAGTAATAATATCGTCAAGTCGAAGTACCTTTTTTTGTACCGTAAGATATACTGTCAAATGCTACTGTAGTATATTGTACGCATCTCAACGTG


gi|240334637|gb|GR342094.1|GR342094 CCOW3195.g1 CCOW Avena barbata leaf, pooled from different levels of rain and nitrogen (L) A 

CGGTGAACTCCTTTTCTTCGT
|||||| |||||..||.| ||
GCCACTCGAGGAGGAGGAACA

EST sequence (targeted fragment marked with yellow):
GGTGCTCACCTGCCACGCATACCCCAAGTCCGACATCGTCATCGAGACGCACAAGGAGGAGGAGCTCACCGCATAAGCTGCTTACCCTGCCTATCTCTCTTTGCAACAAGATCGAGCTGATATCATATTGTCTCCTACAGTATCATGCATGCATGGACATCGTCAGATACACCCAATTGTTTGTGCTCGAATGAATTGCTCGATGCATGGTTTGCTCCAGTAATAATGTCTTCGAATTACTACCTTTTTGTACCGTAAGATATACTACTGTCGTAATACTAGCGTGTACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATT


gi|240312074|gb|GR327189.1|GR327189 CCOS3410.g1 CCOS Avena barbata leaf, grown under high rainfall (H) Avena barbata cDNA clone 

CGGTGAACTCCTTTTCTTCGT
|||.||||||||.| |.|| |
GCCGCTTGAGGAGACGGAGGA

EST sequence (targeted fragment marked with yellow):
GAGGAGATTGACCGGATGGTTCAAGGAGGCAGAGGAGTTCGCCGAGGAGGACAAGAAGGTGAAGGAGCGCATCGACGCCCGGAACCCAGCTCGAGACCTATGTTGTACAACATGAAGAACACCGTCGGCGACAAAGGACAAGCTGGCGGACAAGCTCGAGAGCGAGGAGAAGGAGAAGGTGGAGGAGGCTCTCAAGGAGGCCTTGGAGTGGCTGGACGAGAACCAGACCGCTGAGAAGGAGGACTACGACGAGAAGCTGAAGGAGGTGGAGGCCGTCTGCAACCCCATCGTGTTTGCCGTGTACCAGAGGTCTGGTGGCGCCCCCGGTGGCGAGGGTGCTGATGGCGGCCTCGAGGACGAGGAGCACGATGAGCTGTAGATGATGGTTGTCGGTGAAACCAATTTTTGTAATGGTTAGTAGGGGGGTCAGACATGGATAATCACTTACCTTGGTTGGGCTGGGGGTGGTCAGGTTTATTTGCAGATACTACAAGAGACGTCTGTTGTTGATGGAGTTGTAGAAACTCTTGCTACTTCCTTCTGATGTTTTTTCGTTTTGTTATTATAGCGGATTCGCATCGGAATTTATGTGAAGAAAAGCTGATGCAGTTTGTCTTTT